mRNA_Ecto-sp13_S_contig16425.4635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI) HSP 1 Score: 473 bits (1216), Expect = 3.020e-151 Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 1
Query: 1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
VSRLVMVGLRLLQRWSCVVLEC AWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHV+AATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDL KEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY
Sbjct: 397 VSRLVMVGLRLLQRWSCVVLECMAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVHAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLKKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 636
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 1.820e-125 Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 1
Query: 100 AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDW+DGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDL +EDL LLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY
Sbjct: 140 AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWTDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLKREDLELLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 346
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A835YVZ9_9STRA (Cytoplasmic fragile-X interacting family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ9_9STRA) HSP 1 Score: 228 bits (582), Expect = 4.750e-65 Identity = 129/287 (44.95%), Postives = 175/287 (60.98%), Query Frame = 1
Query: 4 SRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRA--GGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQ----------------------------------------------GRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
+++ + GLRLLQRW+ +LE A K PCS+AA A GG + G+ Y R VRYN+S ELSA E++T K+L + LS AE LAP +R +V+A TQQ+ QGD++P+LHRADKKKR V LL +R+M++DW++ DY+ YKR + GRV A PR V PS++QLQL R++VRAI DE+SELRQ SG+LG+EDLTK+D+ + T+Y +SF FPYL+DL GTIR+++DLGDLW+
Sbjct: 415 AQVALAGLRLLQRWTSGLLEAHAAKLAAPCSEAAVGAAATGGAEVEAGL-YARAVRYNYSREELSAAAELVTSIKTLAAQLSAAEPLLAPAIRTYVHACTQQLVQGDMLPILHRADKKKRGTVAQLLAVRAMLADWTNDSEAQNDYRTYKRKEEQSVCTVSGQAVRMLSHDAASGLRFLCHFFXXXXXXXXXXXXXXXDGRVAASFPPR-VTAPSTSQLQLARSVVRAICDESSELRQGSGILGKEDLTKDDMEAMMTFYAESFAFPYLIDLSGTIRAASDLGDLWF 699
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN) HSP 1 Score: 219 bits (557), Expect = 9.650e-62 Identity = 113/240 (47.08%), Postives = 161/240 (67.08%), Query Frame = 1
Query: 1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
+S+L++ G +LLQ W+C VLE WK THP K AG P YE V++N+SP EL +V+VI+M KSL ++L+ E +AP +RLHV+ QQ G+L+P LHRA K+KR I+ LL+LR +V+DW D + P +DY +Y R GRVEA P RVVGPS TQLQL+R MVR+++D+ ++L+ G+ + DL +EDL L+ T+Y +S F Y+L+ T+R+++DL DLWY
Sbjct: 405 ISKLIVDGFKLLQSWTCKVLEAYHWKLTHPYGYYLGK-AGATP------YEAAVKFNYSPRELGVVVDVISMIKSLSAILTNVESDVAPYVRLHVHHEVQQFVAGELIPPLHRAQKRKRAIIVPLLKLRRLVADWPDSMEPVDDYTRYSRQDGRVEAVH-PVRVVGPSPTQLQLMRTMVRSMFDQRNQLKV--GMFSKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWY 634
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A8J2T1L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L4_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.780e-61 Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 1
Query: 1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
VS++V G +LLQ W+C VLE WK THPC+ A + YE +RYN+SP EL +V++I+M KSL S+L++AE +AP +RLH++ QQ S G LVP LHRA K+KR I+ LL+LR +VSDW + P DY Y R GRVE R VVGP+ TQL+L+R MVRA+YD ++LR ++DL KEDL L+ +Y +S F YLL+ GT+ S++DLGDLWY
Sbjct: 403 VSKMVFDGFKLLQSWTCAVLESYHWKLTHPCAAAIITKLDKQ---SDHPYELAIRYNYSPRELGVLVDIISMIKSLTSMLTQAEAHVAPYIRLHIHHKIQQFSAGGLVPPLHRAHKRKRAIINPLLKLRRLVSDWPKNIEPITDYIYYSRQDGRVEPTHTAR-VVGPTFTQLRLLRTMVRAMYDPRNQLRVQ--FFSKKDLEKEDLQLMDYFYCESLCFQYLLNYTGTLTSNSDLGDLWY 636
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A7S1U2Y5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2Y5_9STRA) HSP 1 Score: 176 bits (445), Expect = 4.800e-48 Identity = 88/193 (45.60%), Postives = 131/193 (67.88%), Query Frame = 1
Query: 1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGD--PMGK-----------GMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVR 540
V+R VM G R L RW+C+++E +AWK HP + + + P K G EYERVVRYN++ +ELS +V++I++ KSL S++ +AE + APLLRL+++A Q++ QGD++P+LHRADKK+R ++ +LQ+R++ +DW +G+ S+DYK Y+R Q + P RVVGPSSTQL L+R MVR
Sbjct: 378 VARTVMTGFRYLMRWTCMIMESSAWKLKHPINDDNLRNKLMELYPPEKVEEMMTALCQQGSEYERVVRYNYAKDELSVMVDMISLVKSLASMMDKAENKFAPLLRLYIHAEVQKLVQGDMLPMLHRADKKRRPVLQAMLQIRTIAADWLNGIENSQDYKNYRRGQSTADI-NVPARVVGPSSTQLYLLRTMVR 569
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: F0YNJ9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ9_AURAN) HSP 1 Score: 164 bits (415), Expect = 3.330e-44 Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 1
Query: 214 MTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
M KSL ++L+ E +AP +RLHV+ QQ G+L+P LHRA K+KR I+ LL+LR +V+DW D + P +DY +Y R GRVEA P RVVGPS TQLQL+R MVR+++D+ ++L+ G+ + DL +EDL L+ T+Y +S F Y+L+ T+R+++DL DLWY
Sbjct: 1 MIKSLSAILTNVESDVAPYVRLHVHHEVQQFVAGELIPPLHRAQKRKRAIIVPLLKLRRLVADWPDSMEPVDDYTRYSRQDGRVEAVH-PVRVVGPSPTQLQLMRTMVRSMFDQRNQLKV--GMFSKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWY 166
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A6A5BI27_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BI27_NAEFO) HSP 1 Score: 157 bits (397), Expect = 2.920e-40 Identity = 83/238 (34.87%), Postives = 135/238 (56.72%), Query Frame = 1
Query: 22 GLRLLQRWSCVVLECTAWKHTHPCS-----QAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
GLRL+ W+ VLE AWK++HP Q ++ D + +EYERVVR+N+ +E SA+V+ I+M K L +++ + +APL+R ++ QQ Q DL +L+ K+R I +L+LR++ DW P ++ K + +G P+R+VGPS TQL ++R++V +Y E S Q SG+ ++D + +LR +Y +++ + YLL + R + DL DLWY
Sbjct: 405 GLRLIASWTTAVLEQCAWKYSHPIEDEQARQMKQRQESDDNLSVLLEYERVVRFNYDKDERSALVDAISMIKGLENIMLQQNAMMAPLIRSEIHYQLQQFIQMDLPELLYHTKNKQRPIFPTVLELRNLAGDWLQD--PPQEITKPNKKKGESSV-DFPKRIVGPSFTQLHMIRSIVSTLYSERSPGMQKSGIFSKKDFNDSHVEILRDFYNKTYMWNYLLAYSTSFRRAADLADLWY 639
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: D2VQD6_NAEGR (Component of scar regulatory complex n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VQD6_NAEGR) HSP 1 Score: 150 bits (379), Expect = 7.490e-38 Identity = 78/240 (32.50%), Postives = 134/240 (55.83%), Query Frame = 1
Query: 22 GLRLLQRWSCVVLECTAWKHTHPCS-------QAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
G++L+ W+ +LE AWK++HP + ++ +EYERVVR+N+ +E SA+V+ I+M K L +++ + +APL+R ++ QQ Q DL +L+ K+R I +L+LR++ DW + P +D K + +G A P+R+VGPS TQL ++R+++ +Y E S Q SG+ ++D + + +Y +++ + YLL T+R + DL DLWY
Sbjct: 405 GMKLIASWTTAILEQCAWKYSHPIDDEQARTLKQRYEAVDASQKVDILEYERVVRFNYDKDERSALVDAISMIKGLENIMLQQNALMAPLIRSEIHYQLQQFIQVDLQDMLYHTKNKQRPIFPTVLELRNLAGDWLN--EPPQDITKPTKKKGEA-ALEYPKRIVGPSFTQLHMIRSIISTLYSERSPGMQKSGIFSKKDFNDSHVESFKEFYNKTYTWNYLLAYSTTLRRAADLADLWY 641
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A1V9Y1X7_9ACAR (Cytoplasmic FMR1-interacting protein-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9Y1X7_9ACAR) HSP 1 Score: 149 bits (375), Expect = 2.560e-37 Identity = 95/240 (39.58%), Postives = 131/240 (54.58%), Query Frame = 1
Query: 4 SRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQ-LRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
S L + GL+LL W+C V E +WK HP A K+ P + EYER RYN+SP+E A++EVI M K L L+SR E R HVY QQ Q L L +A K K+++V ++Q +R +DW G PSED + E K APRR VGPSSTQL +VR M+ ++ + S ++S R+DL L + +++QSF + YLL+ T++ DL LWY
Sbjct: 561 SELALSGLQLLSNWTCHVTELYSWKLMHPTDPALNKQYC-PPDAE--EYERATRYNYSPDEKFALIEVIAMIKGLQVLMSRMETVFTDAARRHVYFELQQFVQVSLREPLRKAVKNKKEVVRSIVQSVRETCADWMRGYEPSEDPALKGKKDTEYEIK-APRRNVGPSSTQLYMVRTMLESLIADKSGAKRSL----RKDLDTASLADIERFHKQSFYWNYLLNFSQTLQECCDLSQLWY 792 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16425.4635.1 >prot_Ecto-sp13_S_contig16425.4635.1 ID=prot_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp MVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRback to top mRNA from alignment at Ecto-sp13_S_contig16425:376..2636- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16425.4635.1 ID=mRNA_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16425:376..2636- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16425:376..2636- >mRNA_Ecto-sp13_S_contig16425.4635.1 ID=mRNA_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16425:376..2636- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |