mRNA_Ecto-sp13_S_contig16425.4635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16425.4635.1
Unique NamemRNA_Ecto-sp13_S_contig16425.4635.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 3.020e-151
Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 1
Query:    1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            VSRLVMVGLRLLQRWSCVVLEC AWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHV+AATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDL KEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY
Sbjct:  397 VSRLVMVGLRLLQRWSCVVLECMAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVHAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLKKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 636          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 1.820e-125
Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 1
Query:  100 AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDW+DGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDL +EDL LLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY
Sbjct:  140 AAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWTDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLKREDLELLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 346          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A835YVZ9_9STRA (Cytoplasmic fragile-X interacting family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ9_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.750e-65
Identity = 129/287 (44.95%), Postives = 175/287 (60.98%), Query Frame = 1
Query:    4 SRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRA--GGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQ----------------------------------------------GRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            +++ + GLRLLQRW+  +LE  A K   PCS+AA   A  GG  +  G+ Y R VRYN+S  ELSA  E++T  K+L + LS AE  LAP +R +V+A TQQ+ QGD++P+LHRADKKKR  V  LL +R+M++DW++      DY+ YKR +                                              GRV A   PR V  PS++QLQL R++VRAI DE+SELRQ SG+LG+EDLTK+D+  + T+Y +SF FPYL+DL GTIR+++DLGDLW+
Sbjct:  415 AQVALAGLRLLQRWTSGLLEAHAAKLAAPCSEAAVGAAATGGAEVEAGL-YARAVRYNYSREELSAAAELVTSIKTLAAQLSAAEPLLAPAIRTYVHACTQQLVQGDMLPILHRADKKKRGTVAQLLAVRAMLADWTNDSEAQNDYRTYKRKEEQSVCTVSGQAVRMLSHDAASGLRFLCHFFXXXXXXXXXXXXXXXDGRVAASFPPR-VTAPSTSQLQLARSVVRAICDESSELRQGSGILGKEDLTKDDMEAMMTFYAESFAFPYLIDLSGTIRAASDLGDLWF 699          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 219 bits (557), Expect = 9.650e-62
Identity = 113/240 (47.08%), Postives = 161/240 (67.08%), Query Frame = 1
Query:    1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            +S+L++ G +LLQ W+C VLE   WK THP      K AG  P      YE  V++N+SP EL  +V+VI+M KSL ++L+  E  +AP +RLHV+   QQ   G+L+P LHRA K+KR I+  LL+LR +V+DW D + P +DY +Y R  GRVEA   P RVVGPS TQLQL+R MVR+++D+ ++L+   G+  + DL +EDL L+ T+Y +S  F Y+L+   T+R+++DL DLWY
Sbjct:  405 ISKLIVDGFKLLQSWTCKVLEAYHWKLTHPYGYYLGK-AGATP------YEAAVKFNYSPRELGVVVDVISMIKSLSAILTNVESDVAPYVRLHVHHEVQQFVAGELIPPLHRAQKRKRAIIVPLLKLRRLVADWPDSMEPVDDYTRYSRQDGRVEAVH-PVRVVGPSPTQLQLMRTMVRSMFDQRNQLKV--GMFSKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWY 634          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A8J2T1L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.780e-61
Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 1
Query:    1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            VS++V  G +LLQ W+C VLE   WK THPC+ A   +           YE  +RYN+SP EL  +V++I+M KSL S+L++AE  +AP +RLH++   QQ S G LVP LHRA K+KR I+  LL+LR +VSDW   + P  DY  Y R  GRVE     R VVGP+ TQL+L+R MVRA+YD  ++LR       ++DL KEDL L+  +Y +S  F YLL+  GT+ S++DLGDLWY
Sbjct:  403 VSKMVFDGFKLLQSWTCAVLESYHWKLTHPCAAAIITKLDKQ---SDHPYELAIRYNYSPRELGVLVDIISMIKSLTSMLTQAEAHVAPYIRLHIHHKIQQFSAGGLVPPLHRAHKRKRAIINPLLKLRRLVSDWPKNIEPITDYIYYSRQDGRVEPTHTAR-VVGPTFTQLRLLRTMVRAMYDPRNQLRVQ--FFSKKDLEKEDLQLMDYFYCESLCFQYLLNYTGTLTSNSDLGDLWY 636          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A7S1U2Y5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2Y5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.800e-48
Identity = 88/193 (45.60%), Postives = 131/193 (67.88%), Query Frame = 1
Query:    1 VSRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGD--PMGK-----------GMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVR 540
            V+R VM G R L RW+C+++E +AWK  HP +    +    +  P  K           G EYERVVRYN++ +ELS +V++I++ KSL S++ +AE + APLLRL+++A  Q++ QGD++P+LHRADKK+R ++  +LQ+R++ +DW +G+  S+DYK Y+R Q   +    P RVVGPSSTQL L+R MVR
Sbjct:  378 VARTVMTGFRYLMRWTCMIMESSAWKLKHPINDDNLRNKLMELYPPEKVEEMMTALCQQGSEYERVVRYNYAKDELSVMVDMISLVKSLASMMDKAENKFAPLLRLYIHAEVQKLVQGDMLPMLHRADKKRRPVLQAMLQIRTIAADWLNGIENSQDYKNYRRGQSTADI-NVPARVVGPSSTQLYLLRTMVR 569          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: F0YNJ9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ9_AURAN)

HSP 1 Score: 164 bits (415), Expect = 3.330e-44
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 1
Query:  214 MTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            M KSL ++L+  E  +AP +RLHV+   QQ   G+L+P LHRA K+KR I+  LL+LR +V+DW D + P +DY +Y R  GRVEA   P RVVGPS TQLQL+R MVR+++D+ ++L+   G+  + DL +EDL L+ T+Y +S  F Y+L+   T+R+++DL DLWY
Sbjct:    1 MIKSLSAILTNVESDVAPYVRLHVHHEVQQFVAGELIPPLHRAQKRKRAIIVPLLKLRRLVADWPDSMEPVDDYTRYSRQDGRVEAVH-PVRVVGPSPTQLQLMRTMVRSMFDQRNQLKV--GMFSKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWY 166          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A6A5BI27_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BI27_NAEFO)

HSP 1 Score: 157 bits (397), Expect = 2.920e-40
Identity = 83/238 (34.87%), Postives = 135/238 (56.72%), Query Frame = 1
Query:   22 GLRLLQRWSCVVLECTAWKHTHPCS-----QAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            GLRL+  W+  VLE  AWK++HP       Q   ++   D +   +EYERVVR+N+  +E SA+V+ I+M K L +++ +    +APL+R  ++   QQ  Q DL  +L+    K+R I   +L+LR++  DW     P ++  K  + +G       P+R+VGPS TQL ++R++V  +Y E S   Q SG+  ++D     + +LR +Y +++ + YLL    + R + DL DLWY
Sbjct:  405 GLRLIASWTTAVLEQCAWKYSHPIEDEQARQMKQRQESDDNLSVLLEYERVVRFNYDKDERSALVDAISMIKGLENIMLQQNAMMAPLIRSEIHYQLQQFIQMDLPELLYHTKNKQRPIFPTVLELRNLAGDWLQD--PPQEITKPNKKKGESSV-DFPKRIVGPSFTQLHMIRSIVSTLYSERSPGMQKSGIFSKKDFNDSHVEILRDFYNKTYMWNYLLAYSTSFRRAADLADLWY 639          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: D2VQD6_NAEGR (Component of scar regulatory complex n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VQD6_NAEGR)

HSP 1 Score: 150 bits (379), Expect = 7.490e-38
Identity = 78/240 (32.50%), Postives = 134/240 (55.83%), Query Frame = 1
Query:   22 GLRLLQRWSCVVLECTAWKHTHPCS-------QAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            G++L+  W+  +LE  AWK++HP         +  ++          +EYERVVR+N+  +E SA+V+ I+M K L +++ +    +APL+R  ++   QQ  Q DL  +L+    K+R I   +L+LR++  DW +   P +D  K  + +G   A   P+R+VGPS TQL ++R+++  +Y E S   Q SG+  ++D     +   + +Y +++ + YLL    T+R + DL DLWY
Sbjct:  405 GMKLIASWTTAILEQCAWKYSHPIDDEQARTLKQRYEAVDASQKVDILEYERVVRFNYDKDERSALVDAISMIKGLENIMLQQNALMAPLIRSEIHYQLQQFIQVDLQDMLYHTKNKQRPIFPTVLELRNLAGDWLN--EPPQDITKPTKKKGEA-ALEYPKRIVGPSFTQLHMIRSIISTLYSERSPGMQKSGIFSKKDFNDSHVESFKEFYNKTYTWNYLLAYSTTLRRAADLADLWY 641          
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Match: A0A1V9Y1X7_9ACAR (Cytoplasmic FMR1-interacting protein-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9Y1X7_9ACAR)

HSP 1 Score: 149 bits (375), Expect = 2.560e-37
Identity = 95/240 (39.58%), Postives = 131/240 (54.58%), Query Frame = 1
Query:    4 SRLVMVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVRYNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQGDLVPVLHRADKKKRDIVTHLLQ-LRSMVSDWSDGVAPSEDYKKYKRAQGRVEAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY 720
            S L + GL+LL  W+C V E  +WK  HP   A  K+    P  +  EYER  RYN+SP+E  A++EVI M K L  L+SR E       R HVY   QQ  Q  L   L +A K K+++V  ++Q +R   +DW  G  PSED     +     E K APRR VGPSSTQL +VR M+ ++  + S  ++S     R+DL    L  +  +++QSF + YLL+   T++   DL  LWY
Sbjct:  561 SELALSGLQLLSNWTCHVTELYSWKLMHPTDPALNKQYC-PPDAE--EYERATRYNYSPDEKFALIEVIAMIKGLQVLMSRMETVFTDAARRHVYFELQQFVQVSLREPLRKAVKNKKEVVRSIVQSVRETCADWMRGYEPSEDPALKGKKDTEYEIK-APRRNVGPSSTQLYMVRTMLESLIADKSGAKRSL----RKDLDTASLADIERFHKQSFYWNYLLNFSQTLQECCDLSQLWY 792          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16425.4635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI3.020e-15198.75UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQX8_9PHAE1.820e-12598.07UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YVZ9_9STRA4.750e-6544.95Cytoplasmic fragile-X interacting family-domain-co... [more]
F0YL26_AURAN9.650e-6247.08Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2T1L4_9STRA1.780e-6148.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U2Y5_9STRA4.800e-4845.60Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YNJ9_AURAN3.330e-4448.52Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6A5BI27_NAEFO2.920e-4034.87Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
D2VQD6_NAEGR7.490e-3832.50Component of scar regulatory complex n=1 Tax=Naegl... [more]
A0A1V9Y1X7_9ACAR2.560e-3739.58Cytoplasmic FMR1-interacting protein-like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16425contigEcto-sp13_S_contig16425:376..2636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score465.3
Seed ortholog evalue1.7e-128
Seed eggNOG ortholog2880.D7G6Y8
Model size720
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Exons4
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
Cds size705
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.030139-CDS-Ecto-sp13_S_contig16425:375..5171681462864.030139-CDS-Ecto-sp13_S_contig16425:375..517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16425 376..517 -
1681462864.0417163-CDS-Ecto-sp13_S_contig16425:969..11661681462864.0417163-CDS-Ecto-sp13_S_contig16425:969..1166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16425 970..1166 -
1681462864.051687-CDS-Ecto-sp13_S_contig16425:1596..17731681462864.051687-CDS-Ecto-sp13_S_contig16425:1596..1773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16425 1597..1773 -
1681462864.0614192-CDS-Ecto-sp13_S_contig16425:2432..26211681462864.0614192-CDS-Ecto-sp13_S_contig16425:2432..2621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16425 2433..2621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.0696774-UTR-Ecto-sp13_S_contig16425:2621..26361681462864.0696774-UTR-Ecto-sp13_S_contig16425:2621..2636Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16425 2622..2636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16425.4635.1prot_Ecto-sp13_S_contig16425.4635.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16425 376..2621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16425.4635.1

>prot_Ecto-sp13_S_contig16425.4635.1 ID=prot_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
MVGLRLLQRWSCVVLECTAWKHTHPCSQAAFKRAGGDPMGKGMEYERVVR
YNWSPNELSAIVEVITMTKSLGSLLSRAEGRLAPLLRLHVYAATQQMSQG
DLVPVLHRADKKKRDIVTHLLQLRSMVSDWSDGVAPSEDYKKYKRAQGRV
EAKGAPRRVVGPSSTQLQLVRAMVRAIYDENSELRQSSGVLGREDLTKED
LGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWY
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mRNA from alignment at Ecto-sp13_S_contig16425:376..2636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16425.4635.1 ID=mRNA_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16425:376..2636- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCCCGGCTGGTGATGGTGGGCCTGAGGCTGCTGCAGCGCTGGTCGTG CGTGGTGCTGGAGTGCACGGCCTGGAAGCACACCCACCCGTGCTCGCAGG CGGCGTTCAAGAGGGCCGGGGGCGACCCGATGGGGAAAGGGATGGAGTAC GAGAGGGTGGTACGGTATAACTGGTCCCCGAACGAACTGAGCGCGATTGT GGAGGTGCGTTGTGGAGTGAGCCGATCAGAGAGCAGTAGCGGCCGAGACT TCTGTATGAAGTGCGGGAGGGACTTGGACTTTTGTGTTTGCACATCGTGC ATGAAAGGGATGGGTTGGACGAAGATCAAGTTGTTGTAAAAGAAGGAAAT GTGTTGGCGTAGACGGTGACACATGTTGCCGACACATGTTGCCCTCTTTT CCTAGTGTAGTATCGCCTTGACTCGCCATGACGGATCGAAAATTTTTGGA ACGGCGGTTGGGCAGGTGGGACGAGGTCGGGTTGTTTGACCAAGCTGTAT ATTGCTTTCACTTTTTTGCACTTCGTTAGCTGTCTGAGGTTTGTTTTTTG GTTGTGGAGACGTCCAGGTGATAGTTGTGCATAGCGCATAGAAGGCAGGC GCTGTAGCTGCATTCTGGAACTGTACGCGAGACGTCGATAACCGTAGGGA AGCTTCAGGTTGTCCAGTACTAAAAATTGCGGCCCCTTTCTCCCAACCGC GTGTACTGCCCACAACGGCTTTGCTGCTGGTGTGTATGCGGTACTAGTCC ATCGTTCCCCCATCTTCGTTTCTCACGTCTATTTATTGATGCGCCGCGTC AACACTCAGACTCCCTCATTCAACATGGGGCCTCAGACCACCTCTTGACC GTCGACGCTGCAGGTGATCACGATGACCAAGTCTCTGGGGTCCCTGCTTT CCAGGGCGGAAGGCCGCCTGGCGCCGCTTCTCAGGCTGCACGTCTACGCA GCCACGCAGCAAATGTCGCAGGGGGATCTTGTGCCGGTGCTGCACAGGGC CGACAAAAAGAAGCGGGATATCGTCACGCACTTGCTCCAGGTACAGCAGT GGAGCAATCGAAACGGAGGTTCCCGCGAACCATTTTCACTTGAGTTGGCT GTCGTACATACTGCTGGAGAGATTATGGTATCCCCCCATGTAGACCAATG TACAGTAGAGCAATCGAAATAAAGGTGCCCGCGAAGCACTTTCATTCGAA TTTCCTGTTGTACATATCGCTGGGGATATTGTGGCACTGCCTTTCTGTAA ACCGAGATGCAAAGCTCGATTGATTGCTCCCTACCGATGGGGGTGGCCAG TGTCCAACAGGGGTGGCTCTTGGAACGGTGTCGTCACGAGATTTTTTCTC AGACCTATCGGCCGGTTCAAACAACCCCCCCATCCCCCATTCCCCCCGTT TTTATTCGTAGCATCGGATTGCAACGATCACTTCCGCGACCCTGTCTGGT TTCCCATTTGACGTTGGCAGCTCCGATCGATGGTCTCGGACTGGTCGGAC GGCGTCGCTCCATCCGAGGACTACAAGAAGTACAAGAGGGCGCAGGGGAG GGTAGAGGCGAAGGGGGCTCCGCGTAGAGTGGTGGGCCCTAGCTCGACAC AACTGCAGCTTGTGAGGGCGATGGTGCGGGCCATCTACGACGAGAACAGC GAGCTCAGGCAGAGCAGGTAGGGCTGCGGTACGGTATTGCGTGGTATGGT ATGGTATGGTATGGTATGGTATGGTGTTGCATAGCGGAGAAGTTGTCAAT TGCCTCGGCTATTGGCATGTGGGTGGTGCTGCTGCTGCTATGGTCTTTCC GGCAGCATGGTGCCTCGAGTTTTCTTGATCAGCGGGTAGCAAGAGCGGTT AGGCGTACCGTAGGCCTCATCGGAATACCCCCCGATATGGTTTGGGGACT TGCGTCTTCTCCGACAACGAATGATTCATTTCGCCGCTTGCTTCAAGATT GCCCCAGTGAATGTTAGAACACACCGCTTGCGCAGATCCATAACGGCAGA CAACGGAGAATCCCCCTCGCGCGCGCCCGATCCCCGCCGCCGCGTGCTCT TACGCTGCGCGGCACGCCTTCTCCTTGCTGAACTGTCGTTCTGTCGTTTG GTGATGGCCTGCTTTGCAGCGGCGTTTTGGGCAGAGAGGACCTCACGAAG GAAGACCTAGGACTTCTGAGGACCTACTACGAGCAGTCGTTCGGCTTCCC CTACCTCTTGGACTTGGGTGGCACCATCCGGTCGTCGACCGACTTGGGGG ACCTCTGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16425:376..2636-

>mRNA_Ecto-sp13_S_contig16425.4635.1 ID=mRNA_Ecto-sp13_S_contig16425.4635.1|Name=mRNA_Ecto-sp13_S_contig16425.4635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16425:376..2636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGCCTGAGGCTGCTGCAGCGCTGGTCGTGCGTGGTGCTGGAGTG
CACGGCCTGGAAGCACACCCACCCGTGCTCGCAGGCGGCGTTCAAGAGGG
CCGGGGGCGACCCGATGGGGAAAGGGATGGAGTACGAGAGGGTGGTACGG
TATAACTGGTCCCCGAACGAACTGAGCGCGATTGTGGAGGTGATCACGAT
GACCAAGTCTCTGGGGTCCCTGCTTTCCAGGGCGGAAGGCCGCCTGGCGC
CGCTTCTCAGGCTGCACGTCTACGCAGCCACGCAGCAAATGTCGCAGGGG
GATCTTGTGCCGGTGCTGCACAGGGCCGACAAAAAGAAGCGGGATATCGT
CACGCACTTGCTCCAGCTCCGATCGATGGTCTCGGACTGGTCGGACGGCG
TCGCTCCATCCGAGGACTACAAGAAGTACAAGAGGGCGCAGGGGAGGGTA
GAGGCGAAGGGGGCTCCGCGTAGAGTGGTGGGCCCTAGCTCGACACAACT
GCAGCTTGTGAGGGCGATGGTGCGGGCCATCTACGACGAGAACAGCGAGC
TCAGGCAGAGCAGCGGCGTTTTGGGCAGAGAGGACCTCACGAAGGAAGAC
CTAGGACTTCTGAGGACCTACTACGAGCAGTCGTTCGGCTTCCCCTACCT
CTTGGACTTGGGTGGCACCATCCGGTCGTCGACCGACTTGGGGGACCTCT
GGTAC
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