mRNA_Ecto-sp13_S_contig16415.4629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16415.4629.1
Unique NamemRNA_Ecto-sp13_S_contig16415.4629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: D7FJ93_ECTSI (Signal recognition particle subunit SRP72 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ93_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.830e-50
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:    1 LVDKASQKAERRQKKRNPEAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEKV 321
            LVDKASQKAERRQ KR+PEAILKKRAXXXXX IAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEK 
Sbjct:  571 LVDKASQKAERRQNKRDPEAILKKRAXXXXXYIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEKA 677
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A835YI58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI58_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.820e-20
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    4 VDKASQKAERRQKKRNPEAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALAR 288
            V K + KAER+ +  N     K+RA      +A L+  GK+DPTKP   PDPERWIPR  R+Y KRGRKRNK +GAQG+GDGA K+ AKLD  AR
Sbjct:  593 VGKDALKAERKARSGNTARRAKRRARAREAHVAALIARGKLDPTKPALLPDPERWIPRKQRSYAKRGRKRNKLLGAQGAGDGAKKEEAKLDVAAR 687
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A7R9UBM0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBM0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.760e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:   31 RRQKKRNPEAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALAR 288
            +R+  + PE I+ +R       + KL  +GKI   +P PKPDPERW+PR  R+Y KRG++RN+F+GAQGSGDGA KD AKLD  AR
Sbjct:   86 KRRAAKRPERIMLRRTKLREQYLQKLAAEGKIHADRP-PKPDPERWLPRKQRSYNKRGKRRNQFLGAQGSGDGAQKDAAKLDVAAR 170
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A7S2V151_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V151_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.290e-18
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   55 EAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDALARAQAKQ 303
            E IL++RA      I KL   G+ DP KP   PDPERW+PR  R+Y +RGR+ R++F GAQG+G+G AKD AKLDA AR+QAK+
Sbjct:   14 EKILRRRAKAKAKFIEKLTAAGRYDPRKPT-FPDPERWVPRKQRSYNRRGRRGRHRFTGAQGAGEGTAKDAAKLDAYARSQAKK 96
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A7S4W6J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W6J8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.370e-18
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   40 KKRNPEAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKD--TAKLDALARA 291
            KK+N EAIL++RA      + KL  +G+ +P +P  KPDPERWIP++ R+Y +RGR+ RNKFVGAQG G GA  D   AKLDA ARA
Sbjct:   41 KKKNREAILRQRAKKREQYLKKLESEGRYNPDRPA-KPDPERWIPKNQRSYNRRGRRGRNKFVGAQGGGTGAGADREAAKLDAAARA 126
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A812S6I0_SYMMI (SRP72 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S6I0_SYMMI)

HSP 1 Score: 86.3 bits (212), Expect = 2.190e-17
Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   67 KKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDALARAQA 297
            +KRA      + KL EDGK DP +P  KPDPERW+P  HR+Y KRGRK R+KFVG QGSGDGA KD  KLD  AR QA
Sbjct:  426 RKRAKRREAYLQKLQEDGKYDPARPS-KPDPERWLPLKHRSYNKRGRKNRHKFVGGQGSGDGAQKDMQKLDVYARTQA 502
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A7S1ZPJ3_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPJ3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.260e-16
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   40 KKRNPEAILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKD--TAKLDALARA 291
            KK+N EAIL++RA      + KL  +G+ +P +P  KPDPERWIP++ R+Y +RGR+ RNKFVGAQG G GA  D   AKLDA ARA
Sbjct:  761 KKKNREAILRQRAKKREQYLKKLESEGRYNPDRPA-KPDPERWIPKNQRSYNRRGRRGRNKFVGAQGGGTGAGADREAAKLDAAARA 846
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: W7TLA7_9STRA (Srp72 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLA7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.510e-15
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   67 KKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEKVRKGDLR 339
            ++RA      +AKL  +GK D ++P P PDPERWI ++ R+Y KRG+K R KFVGAQGSG+GAA+D A LD  +R +A++   ++  +G ++
Sbjct:  631 RQRARARTVYLAKLTAEGKYDASRPGPPPDPERWIAKNQRSYNKRGKKGRGKFVGAQGSGNGAARDAAMLDVASRVEAEKKKGDEDGRGGVK 722
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A4D9D6J5_9STRA (MFS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6J5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-14
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   67 KKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEKVRKGDLR 339
            ++RA      +AKL  +GK D ++P P PDPERWI ++ R+Y KRG+K + KFVGAQGSG+GAAKD A LD  +R +A++   ++  +G ++
Sbjct: 1081 RQRARARTVYLAKLTAEGKYDASRPGPPPDPERWIAKNQRSYNKRGKKGKAKFVGAQGSGNGAAKDAAMLDVASRVEAERKKGDEEGRGGVK 1172
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BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Match: A0A7S2SJY1_9STRA (Signal recognition particle subunit SRP72 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.580e-14
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   61 ILKKRAXXXXXXIAKLVEDGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK-RN-KFVGAQGSGDGAAKDTAKLDALARAQAKQ 303
            +L++R       ++ L   GK DP  P   PDPERWIP+  R+Y KRGRK RN KF GAQG+G+GAAKD AKLDA ARAQAK+
Sbjct:  599 VLRRRQMRREAYLSALTAAGKYDPKHPAT-PDPERWIPKKLRSYNKRGRKNRNAKFSGAQGTGEGAAKDAAKLDAYARAQAKK 680
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16415.4629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FJ93_ECTSI2.830e-5096.26Signal recognition particle subunit SRP72 n=2 Tax=... [more]
A0A835YI58_9STRA1.820e-2055.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UBM0_9STRA4.760e-1953.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2V151_9STRA2.290e-1855.95Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4W6J8_9STRA8.370e-1856.32Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A812S6I0_SYMMI2.190e-1762.82SRP72 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1ZPJ3_9STRA5.260e-1656.32Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
W7TLA7_9STRA8.510e-1546.74Srp72 n=2 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A4D9D6J5_9STRA1.200e-1446.74MFS domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2SJY1_9STRA1.580e-1457.83Signal recognition particle subunit SRP72 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16415contigEcto-sp13_S_contig16415:2510..3541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score179.5
Seed ortholog evalue8.8e-43
Seed eggNOG ortholog2880.D7FJ93
Preferred nameSRP72
Model size339
KEGG koko:K03108
KEGG TC3.A.5.9
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006403,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0019904,GO:0030911,GO:0032991,GO:0033036,GO:0033227,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050657,GO:0050658,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
Exons3
EggNOG free text desc.7S RNA binding
EggNOG OGsKOG2376@1,KOG2376@2759
Cds size339
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.6246507-CDS-Ecto-sp13_S_contig16415:2509..26141681462863.6246507-CDS-Ecto-sp13_S_contig16415:2509..2614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16415 2510..2614 -
1681462863.6408238-CDS-Ecto-sp13_S_contig16415:2862..29781681462863.6408238-CDS-Ecto-sp13_S_contig16415:2862..2978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16415 2863..2978 -
1681462863.6517036-CDS-Ecto-sp13_S_contig16415:3423..35411681462863.6517036-CDS-Ecto-sp13_S_contig16415:3423..3541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16415 3424..3541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16415.4629.1prot_Ecto-sp13_S_contig16415.4629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16415 2510..3541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16415.4629.1

>prot_Ecto-sp13_S_contig16415.4629.1 ID=prot_Ecto-sp13_S_contig16415.4629.1|Name=mRNA_Ecto-sp13_S_contig16415.4629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
LVDKASQKAERRQKKRNPEAILKKRAKKRAKYIAKLVEDGKIDPTKPVPK
PDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAK
QAASEKVRKGDLR
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mRNA from alignment at Ecto-sp13_S_contig16415:2510..3541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16415.4629.1 ID=mRNA_Ecto-sp13_S_contig16415.4629.1|Name=mRNA_Ecto-sp13_S_contig16415.4629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16415:2510..3541- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGGACAAGGCGTCGCAGAAGGCCGAGCGGCGACAGAAGAAGCGAAA
CCCGGAGGCCATCCTCAAGAAGAGGGCCAAGAAGCGCGCCAAGTACATCG
CCAAGCTCGTGGAGGACGGTCAGTTGTTGTTGTCGTTGGTGGTGGTGTTG
GTGATGGTGTTGGTGATGGTGATGGTGTCCGCATAGTGACCGTAACACCC
CCACCCACCCCCGCAAGTGACCACCTTTTCCGGGGATCTTTTGCAATGTT
TTCGCTCCCTCCTTTGTCCGCTTCTCCACAAACAAGAAACGCTCCCCGCG
TGCTCTCTCGCTTTCATCGGAATATACCTCCCTCCAGAGGAGCGATCACA
AGCTGCTTCGTACCGTTCATAAAACAAGCATTGAAGGCGTTGTTGGTAAT
GGATTGGTTGCATGACGTTGGTGTTGTTGGTACTGTTTTTTTTTTCTTGC
AAAAGCACAACAAATCCGTATCTTCCACAGATGAGAGTCCGGCATTGAAT
TTTAACGAATCTATGGTGTTGTAGGATGACCAACTGTACTTATTCATTTG
TTTTGCGCCGCAGGCAAGATCGATCCCACCAAGCCGGTTCCCAAGCCCGA
TCCCGAGAGGTGGATTCCGCGATCACACCGGGCCTACGGCAAGCGAGGAC
GAAAGCGCAACAAGTTCGTCGGAGCACAGGTACTACGAGATCTTTTCCGC
GTCCCCCCCCCCTTGGGCTGTGCCGTATTCATTGTCGTTGGAACCGAGGC
GACTCCTCCAATAGTATTGGATAAGTTGTTGGTTCACACGACGTTCCCCC
TGTGGCTGTGCTGCTTCATTTTTGTTGTCGCCGAAACCCAGCTGCTTCCT
GCAATAACATACATTTGAGGTTGTTTTTGGTTAGCTATCCCCTTACCCCG
CCTTCCCGAATGTGGTTTTCGCGTCAGGGGTCCGGGGATGGCGCCGCGAA
GGACACCGCGAAGCTCGACGCTCTCGCCAGAGCCCAGGCGAAGCAAGCGG
CGAGTGAAAAGGTACGCAAGGGCGATCTACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16415:2510..3541-

>mRNA_Ecto-sp13_S_contig16415.4629.1 ID=mRNA_Ecto-sp13_S_contig16415.4629.1|Name=mRNA_Ecto-sp13_S_contig16415.4629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16415:2510..3541- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGGACAAGGCGTCGCAGAAGGCCGAGCGGCGACAGAAGAAGCGAAA
CCCGGAGGCCATCCTCAAGAAGAGGGCCAAGAAGCGCGCCAAGTACATCG
CCAAGCTCGTGGAGGACGGCAAGATCGATCCCACCAAGCCGGTTCCCAAG
CCCGATCCCGAGAGGTGGATTCCGCGATCACACCGGGCCTACGGCAAGCG
AGGACGAAAGCGCAACAAGTTCGTCGGAGCACAGGGGTCCGGGGATGGCG
CCGCGAAGGACACCGCGAAGCTCGACGCTCTCGCCAGAGCCCAGGCGAAG
CAAGCGGCGAGTGAAAAGGTACGCAAGGGCGATCTACGG
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