mRNA_Ecto-sp13_S_contig16401.4621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16401.4621.1
Unique NamemRNA_Ecto-sp13_S_contig16401.4621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16401.4621.1 vs. uniprot
Match: A0A6H5KRQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE)

HSP 1 Score: 552 bits (1422), Expect = 2.190e-182
Identity = 349/398 (87.69%), Postives = 365/398 (91.71%), Query Frame = 1 
Query:    1 SYARECQNIPSIFSNLRRYLETELASALSGVFPGGGGEAKSASAMGAYTDSLQAYLETEAECIRRLRERARAEEAEVAAVENELVEYEGLDMPTLTTGLRAKMQQLRNEVAEDREAEHAIMSQARHQLTVLESTLSAYNSTRTKGCFISAAGGCXXXXXXXXXXXAAGIGSGTAGLDYPRPPDVSAATAKKNSGTNAAACAAGGXXXXXXXVGADSLEGSAAAAGLARVRELFALLEVVGSGEEEPLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----FGEAAGSAALPPAGGRDARAQSSGVAATPFGQAGELEDHQGPKRRQGNSHGNGGRPRNPAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDNGGPSASGTDRSSTARTPKGSAN 1179
            SYARECQNIPS++SNLRRYL+++LASAL+GVFPGGGGEAKSASA+GAYTDSLQAY ETEAEC+RRLRERARA+EAEVAAVE ELVEYEGLDMPTLTTGLRA+MQQLRNEVAEDREAEHAIMSQARHQ TVLESTLSAY+STRT GC +SAA GC     XXXXX AAGIGSGTAGLDYPRPPDVSAAT KK  GT+AAA AAGG       VGA SLEGSAAAAGLARVRELFALLEVVGSGEEEPLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     FGEAAG AALPPAG RD+RAQSSGVAATPFGQAGELEDHQGP RRQGNSHGNGGRPRNPAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDNGGPSASGTDRSSTAR P+G+AN
Sbjct:  669 SYARECQNIPSVYSNLRRYLDSQLASALNGVFPGGGGEAKSASALGAYTDSLQAYFETEAECVRRLRERARADEAEVAAVEKELVEYEGLDMPTLTTGLRARMQQLRNEVAEDREAEHAIMSQARHQFTVLESTLSAYDSTRTTGCLVSAAEGCGGGGDXXXXXVAAGIGSGTAGLDYPRPPDVSAATVKKIPGTSAAASAAGGVSGANGRVGAGSLEGSAAAAGLARVRELFALLEVVGSGEEEPLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGEAAGGAALPPAGTRDSRAQSSGVAATPFGQAGELEDHQGPNRRQGNSHGNGGRPRNPAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDNGGPSASGTDRSSTARAPEGAAN 1066
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BLAST of mRNA_Ecto-sp13_S_contig16401.4621.1 vs. uniprot
Match: D7FYK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK5_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.780e-59
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 SYARECQNIPSIFSNLRRYLETELASALSGVFPGGGGEAKSASAMGAYTDSLQAYLETEAECIRRLRERARAEEAEVAAVENELVEYEGLDMPTLTTGLRAKMQQLRNEVAEDREAEHAIMSQA 372
            SY RECQNIPSIFSNLRRYLET+LASALSGVFPGGGG A+SASA+GAYTDSLQAYLETEAEC+RRLRERARAEEAEVAAVENELVEYEGLDMPTLTTGLRAKMQQLR+EVAEDREAEHAIMSQA
Sbjct:  650 SYVRECQNIPSIFSNLRRYLETQLASALSGVFPGGGGGAQSASALGAYTDSLQAYLETEAECVRRLRERARAEEAEVAAVENELVEYEGLDMPTLTTGLRAKMQQLRSEVAEDREAEHAIMSQA 773
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16401.4621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRQ1_9PHAE2.190e-18287.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYK5_ECTSI4.780e-5994.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16401contigEcto-sp13_S_contig16401:307..3096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1201
Hectar predicted targeting categoryother localisation
Exons4
Cds size1200
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.1441312-CDS-Ecto-sp13_S_contig16401:306..4651681462863.1441312-CDS-Ecto-sp13_S_contig16401:306..465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16401 307..465 +
1681462863.153129-CDS-Ecto-sp13_S_contig16401:1268..13941681462863.153129-CDS-Ecto-sp13_S_contig16401:1268..1394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16401 1269..1394 +
1681462863.1618774-CDS-Ecto-sp13_S_contig16401:1757..24791681462863.1618774-CDS-Ecto-sp13_S_contig16401:1757..2479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16401 1758..2479 +
1681462863.1736104-CDS-Ecto-sp13_S_contig16401:2903..30961681462863.1736104-CDS-Ecto-sp13_S_contig16401:2903..3096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16401 2904..3096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16401.4621.1prot_Ecto-sp13_S_contig16401.4621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16401 307..3096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16401.4621.1

>prot_Ecto-sp13_S_contig16401.4621.1 ID=prot_Ecto-sp13_S_contig16401.4621.1|Name=mRNA_Ecto-sp13_S_contig16401.4621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
SYARECQNIPSIFSNLRRYLETELASALSGVFPGGGGEAKSASAMGAYTD
SLQAYLETEAECIRRLRERARAEEAEVAAVENELVEYEGLDMPTLTTGLR
AKMQQLRNEVAEDREAEHAIMSQARHQLTVLESTLSAYNSTRTKGCFISA
AGGCGGGGDGGVGGVAAGIGSGTAGLDYPRPPDVSAATAKKNSGTNAAAC
AAGGASGANGSVGADSLEGSAAAAGLARVRELFALLEVVGSGEEEPLAVG
GGDQSGGDETKAAAEAVAGADGNNNNNNNRTFGEAAGSAALPPAGGRDAR
AQSSGVAATPFGQAGELEDHQGPKRRQGNSHGNGGRPRNPAPSRIRGGVR
LPSPSRGGGNSLQGRLNWLDNGGPSASGTDRSSTARTPKGSANNNNNNNN
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mRNA from alignment at Ecto-sp13_S_contig16401:307..3096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16401.4621.1 ID=mRNA_Ecto-sp13_S_contig16401.4621.1|Name=mRNA_Ecto-sp13_S_contig16401.4621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16401:307..3096+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTATGCCAGGGAGTGCCAGAACATCCCGTCCATCTTTTCCAATCTCCG
GAGATACTTGGAAACCGAGCTGGCGTCGGCCTTGAGCGGCGTGTTTCCGG
GGGGGGGCGGGGAAGCGAAGTCTGCGAGCGCTATGGGGGCTTACACAGAT
TCATTGCAGGTAGGCGCGGGTATGTATTAACGCTCCGTGTATTGGTTTGG
TTGTGGTTTCACTTTTCTTCAGTTGAAGCAACATGGCTTATTTTTCTTCC
TTCTCTTTTTATTCTTCTTCTTCTTTCTCGTGTTTCCTTCGTGTTGTCTT
CTCGCCTCCTTTTTACTGTTGTGTATTATCAAGTAATGGAACCATCATTG
TGTTAAGGTGTTTGGTAACATAGATGTTTTCAGCGATCTAAGGTCCAAAT
CAAGAGAGGTAGCACTACGCGTGACATCCAGGGCCAGGGCAGACGCATTG
ACGGACGAACAGAGGGAAATAAATGCTGCTGTTGTCGGCACATTCTCGTA
TTTTTCGCCCCCTCCTACCTTGCGGCTACCTCTCTGTTCTTGGTCCAAGC
TCGTGCGAAGAGCGAAAGAGGCAATATCGACCCTGTGCCGTGAAGAAAAC
GAAACACCCGGCCTTCACCGTTCAGAGGCTTTCCTCTCAAGTTGCCTGGT
TTTTCTTTGGTGAACACCATGACATCTGTTCGTCTGTCTCACCCCGCCTT
AAAAAAAAACAGTAGCCGCACGGAAAAGGATTGGCTAGTCCAGCTGTGTG
GGGAAGGTCTGTAGTACGTGAACTACAGCATGGGCTCACATGAGGATTCC
CCCCCCTCCCCCCCCTCCCCCGAGGTCAGTGGTTTAACGACTACGGCATG
CACGGCTATGAGTATCCCGTTGATGCCCCCGAGGTCAGTGGTTTAACGAC
TACGGCATGCACGGCTATGAGTATCCCGTTGATGCCATTCATTCCTCGTG
TGCGTCAACCAGGCGTACCTAGAGACGGAGGCGGAGTGCATCCGGCGACT
GCGCGAGCGTGCGAGGGCGGAGGAGGCCGAGGTGGCGGCCGTAGAGAACG
AGCTGGTCGAGTACGAGGGGCTCGACATGCCCACCCTGGTTAGTACTCCA
ACACCCAAGACTTGAATGTTTTGGCATGTCGGACGATCTGTACTGCAACA
ACGTCTTCCTTCGGCAATAAGGTTGCCTCTTAGGAGCAACCCGTGTACTC
TCCTATCAGTACCACCTTTTCCCTGATTCGTTTCCGCCTCTTCGCTTGAG
GTGCACGAAGTAGTTGAATCAAACGACAAGGGCAATCAAAACTTGTTTCC
TGTTGATTACTCTCTGAGTTAGTTCTGTTGATATCTGTCTTTTTCTTGTC
GCGGAAAGCACAAATCCTTATTCTATGTTTCTGTCGGTTGCTCTCCGACT
TCTGCTGAATTTATTCATTGATATGTTTTCGCTAAAAAACACGAAATCCA
GACGACGGGGCTCCGCGCCAAGATGCAGCAGCTGCGCAACGAAGTAGCCG
AGGACCGGGAGGCCGAGCATGCCATCATGTCCCAGGCCAGGCACCAGCTC
ACGGTCCTCGAGAGTACCCTCTCCGCCTACAACAGCACCCGCACCAAGGG
CTGCTTCATAAGCGCGGCTGGAGGTTGCGGCGGCGGCGGGGACGGAGGCG
TGGGTGGCGTGGCAGCGGGTATCGGTAGCGGTACCGCTGGGCTGGACTAT
CCCCGGCCTCCGGATGTGTCTGCGGCGACAGCGAAGAAGAACTCCGGTAC
CAACGCAGCTGCTTGTGCCGCTGGTGGTGCTTCTGGTGCTAACGGTAGCG
TCGGCGCCGACAGCCTAGAGGGATCTGCTGCGGCTGCAGGCCTGGCCAGG
GTGAGGGAGCTGTTCGCGCTGCTCGAGGTCGTCGGCAGCGGGGAGGAGGA
GCCGCTCGCCGTCGGCGGCGGTGACCAAAGCGGCGGCGATGAAACGAAGG
CGGCGGCAGAGGCCGTCGCAGGGGCGGATGGCAACAACAACAACAACAAC
AACCGGACCTTTGGTGAAGCGGCAGGATCGGCAGCGCTACCGCCAGCGGG
TGGGAGGGACGCCCGTGCCCAATCCAGCGGAGTTGCTGCTACGCCGTTTG
GCCAGGCGGGGGAACTCGAGGACCACCAAGGACCCAAACGAAGGCAGGGT
AACAGTCACGGCAACGGCGGCAGGTACGGTGCGGCGGGTACAGAAGGAGG
GTAAAGCTGTGGTGAAGGCGCAATATTTAGTGGTGGTCGCCCGGGCGTCG
AAGCTTGCTCGGGTGCGCTGGAAGGTTGTAGTGGAGGGCAAAATAAGAAG
AGGAAGGCCGCGTTGTTTGGCGAATGAGAACGTGTTAGAAGTACTACAGT
AGTACTTGCTAGTTACACCCAACCAGATCCTAGACTCGCCCACTAGGACA
TGGGTATGAAGGTCACGAGTGTCGCTTCCTTGGCAAGTAGTATCTGTATT
GTCCTGGGATCTAGGTGCCTAGGCAGGGCCCCCACAGGCTGTAGTGGTGC
CCCTCTCCCCTTCGTCCACGTTTCCACCACCCTCACGCCCCCCCCATTTC
TGTCTTGTGTGCCCCTTCTCGAAAAACAAAACAAAAAACATGGGCAGGCC
GCGAAACCCGGCCCCGTCGAGGATCCGAGGAGGCGTTCGCCTCCCCTCGC
CGTCGCGGGGCGGAGGGAATTCGCTCCAAGGCCGACTCAACTGGCTCGAC
AACGGCGGACCTAGCGCCAGCGGGACAGACAGAAGCAGCACCGCCCGTAC
CCCGAAGGGCTCCGCAAACAACAACAACAACAACAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16401:307..3096+

>mRNA_Ecto-sp13_S_contig16401.4621.1 ID=mRNA_Ecto-sp13_S_contig16401.4621.1|Name=mRNA_Ecto-sp13_S_contig16401.4621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16401:307..3096+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTATGCCAGGGAGTGCCAGAACATCCCGTCCATCTTTTCCAATCTCCG
GAGATACTTGGAAACCGAGCTGGCGTCGGCCTTGAGCGGCGTGTTTCCGG
GGGGGGGCGGGGAAGCGAAGTCTGCGAGCGCTATGGGGGCTTACACAGAT
TCATTGCAGGCGTACCTAGAGACGGAGGCGGAGTGCATCCGGCGACTGCG
CGAGCGTGCGAGGGCGGAGGAGGCCGAGGTGGCGGCCGTAGAGAACGAGC
TGGTCGAGTACGAGGGGCTCGACATGCCCACCCTGACGACGGGGCTCCGC
GCCAAGATGCAGCAGCTGCGCAACGAAGTAGCCGAGGACCGGGAGGCCGA
GCATGCCATCATGTCCCAGGCCAGGCACCAGCTCACGGTCCTCGAGAGTA
CCCTCTCCGCCTACAACAGCACCCGCACCAAGGGCTGCTTCATAAGCGCG
GCTGGAGGTTGCGGCGGCGGCGGGGACGGAGGCGTGGGTGGCGTGGCAGC
GGGTATCGGTAGCGGTACCGCTGGGCTGGACTATCCCCGGCCTCCGGATG
TGTCTGCGGCGACAGCGAAGAAGAACTCCGGTACCAACGCAGCTGCTTGT
GCCGCTGGTGGTGCTTCTGGTGCTAACGGTAGCGTCGGCGCCGACAGCCT
AGAGGGATCTGCTGCGGCTGCAGGCCTGGCCAGGGTGAGGGAGCTGTTCG
CGCTGCTCGAGGTCGTCGGCAGCGGGGAGGAGGAGCCGCTCGCCGTCGGC
GGCGGTGACCAAAGCGGCGGCGATGAAACGAAGGCGGCGGCAGAGGCCGT
CGCAGGGGCGGATGGCAACAACAACAACAACAACAACCGGACCTTTGGTG
AAGCGGCAGGATCGGCAGCGCTACCGCCAGCGGGTGGGAGGGACGCCCGT
GCCCAATCCAGCGGAGTTGCTGCTACGCCGTTTGGCCAGGCGGGGGAACT
CGAGGACCACCAAGGACCCAAACGAAGGCAGGGTAACAGTCACGGCAACG
GCGGCAGGCCGCGAAACCCGGCCCCGTCGAGGATCCGAGGAGGCGTTCGC
CTCCCCTCGCCGTCGCGGGGCGGAGGGAATTCGCTCCAAGGCCGACTCAA
CTGGCTCGACAACGGCGGACCTAGCGCCAGCGGGACAGACAGAAGCAGCA
CCGCCCGTACCCCGAAGGGCTCCGCAAACAACAACAACAACAACAACAAC
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