mRNA_Ecto-sp13_S_contig16385.4608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16385.4608.1
Unique NamemRNA_Ecto-sp13_S_contig16385.4608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 9.660e-130
Identity = 211/287 (73.52%), Postives = 226/287 (78.75%), Query Frame = 1
Query:    1 QDAPLSAHLPPASSQGGLGANYTYSSVDTRRVGDGEDGVSRKSFGGPTGYEYAPFVDNDSTSYGDASAKGEGGGGVISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFLHGT-----EILHGYSSPSC----LRSVPRLVASPRLFQPKACPLRLLLPCCLHT-----------KIHGESRAR--VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEERSKETKGVKNQ 795
            +DA LSAHLPPASSQGG GANYTYSSVDTR +GDGEDG+SRK FGGPTG+EYAPFVDNDSTSYGDASAKGEGGGG ISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTL +  T     ++++G+ S  C    LR  P L     L       L L     + +           +I G+  A   VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNR AWGWGLTFRQVCLIMSM PVLVLGPAV+YLWEERSKETKGVKNQ
Sbjct:   11 EDAALSAHLPPASSQGGRGANYTYSSVDTRGIGDGEDGISRKGFGGPTGHEYAPFVDNDSTSYGDASAKGEGGGGAISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLVVLMTVPWSFKLIYGFLSDVCPIRGLRRKPYLAFGYLLSSFCYLVLALTAEVTIQSLSGLLFLATMGQIMGDVMADTLVVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNRGAWGWGLTFRQVCLIMSMMPVLVLGPAVVYLWEERSKETKGVKNQ 297          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A836CBB7_9STRA (Folate-biopterin transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 9.890e-36
Identity = 90/226 (39.82%), Postives = 128/226 (56.64%), Query Frame = 1
Query:  148 YEYAPFVDNDSTSYGDASAKGEGGGGVISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFL-----HGTEILHGYSSPSC----LRSVPRLVAS-----------PRLFQPKACPLRLLLPCCLHTKIHGESRAR--VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWE 759
            + Y+P  D    +   ASA G      + LT   + AIPISY+ +GFLGSF+  PL +++VQ+LNAQP+QQNT+ +        ++L+G+ S       LR  P                  L +P    L +LL      +I  +  A   VVERAR E  E RGQ+QATCYA+RF G+V+GCL GA+++N+  WGWGL+FRQVCL+    P+++LG  +  L+E
Sbjct:   17 FPYSPISDLPHHAKQFASAAG------LKLTDASNIAIPISYWLIGFLGSFIGTPLTVFLVQSLNAQPAQQNTIGVLLSIPWSFKLLYGFVSDVLPVGGLRRKPYFALGFALHSACFLLLAALEKPTFSSLAVLLFVATIGQIMADVMADTLVVERARLEDTEQRGQLQATCYAVRFMGSVLGCLMGAVVYNQVQWGWGLSFRQVCLLTGALPLMLLGTTLWTLYE 236          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A7S2XY88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY88_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.310e-31
Identity = 90/210 (42.86%), Postives = 117/210 (55.71%), Query Frame = 1
Query:  232 SLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFLHGT-----EILHGYSSPSC----LRSVPR------LVASPRLF----QPKACP-LRLLLPCCLHTKIHGESRAR--VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEERSKETKGVKNQ 795
            S+    + AIP SY  VGFL +F + PL I++V  L+AQP QQN + +  T     ++L+G+ S       L   P       LVAS  L     Q    P L +L+       I G+  A   VVER R E E S+GQ QATCYA+RF G+V GCLGG LL+N   WGWGLTF QVCL+  + P++VL P +I LWE +  + K V  Q
Sbjct:   47 SMMDISNLAIPASYLLVGFLDAFFSTPLYIFLVNDLDAQPWQQNAIAILTTLPWTFKLLYGFLSDLVPIGGLHRKPYMMLGYVLVASCYLILASLQNITFPVLAVLMFVETVGLIMGDVMADSLVVERGRTEEEGSKGQAQATCYAVRFGGSVAGCLGGTLLYNSTNWGWGLTFPQVCLVNGVLPLVVLLPLLIPLWERQGSQGKSVPQQ 256          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.200e-26
Identity = 75/217 (34.56%), Postives = 116/217 (53.46%), Query Frame = 1
Query:  193 DASAKGEGGGGVISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFLHGT-----EILHGYSSP----------------SCLRSVPRLVASPRLFQPKACPLRLLLPCCLHTKIHGESRARV--VERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEERSKE 774
            DA+A       + +L +     +P +YF +G   SF+  PL +Y+VQ L+A+P+ QNTL +  T     ++L G+ S                 S + +V  L+ +  L +P    L  L+      +I  +  A    VER+R E  E RGQMQATCYA+RF G+V+G   G L++N++AWGWGL+F QVC ++ + P+L + P    +WE+   E
Sbjct:  125 DAAALSPPRAKLANLWAPVSLGLPAAYFFIGIATSFITTPLQVYMVQDLDAEPAAQNTLNVLTTLPWSFKLLFGFLSDVQPVFGARRKPYMIIGSLMHAVSFLMLA-ALGEPSMQSLSTLMWVATMGEIMVDVMADTLAVERSRYEPSEGRGQMQATCYALRFFGSVLGAGTGTLVYNKDAWGWGLSFAQVCFVLGVFPLLFVVPFAYMVWEKPLSE 340          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A7R9U5H3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5H3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.710e-26
Identity = 80/222 (36.04%), Postives = 115/222 (51.80%), Query Frame = 1
Query:  193 DASAKGEGGGGVISLTSRHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFL-----HGTEILHGYSSP------------SCLRSVPRLVASPRLF---QPKACPLRLLLPCCLHTKIHGESRAR--VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEERSKETKGVKN 792
            +A+AK E     + L S    A+P++YF +G   SF+  PL +Y+V+ L A+P  QNT+ +        ++L G+ S               L S+   VA   L     P    L  L       +I  +  A   VVERA+ E E +RGQ QATCYA+RF G+V+G   G + FN +AWGWGLTF +VCLI+   P+  + P   ++WE+   E KG K+
Sbjct:  125 EATAKNEA---QLDLWSIEGLALPMAYFVIGVSVSFITTPLQVYMVEELGAEPEAQNTISILMSLPWSFKLLFGFVSDVNPILGWRRKPYMILGSMAHAVAYLSLALMGTPGIQVLSFLTWVATMGQIMVDVMADTLVVERAKFEPEATRGQTQATCYALRFVGSVLGASSGTVFFNAKAWGWGLTFGEVCLILGALPLFSVVPLAFFVWEKPIHE-KGCKS 342          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 105 bits (261), Expect = 4.720e-22
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 1
Query:  205 KGEGGGGVISLTSRHH---AAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFLHGT-----EILHGYSSPSC----LRSVPRLVAS-----------PRLFQPKACPLR--LLLPCCLHTKIHGESRARVVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYL 753
            K EG G    +T   H    AIP+SYFCVGF  +F++ PL  Y+V  L+A P+QQ+ +    +     ++ +G+ S       +R  P  +               L QP   PL   L L    +      + A VVER++ E+++ RG +QA  Y IRF G+++G   GA+L+NR+ WGWGLT  Q+  + +  P +VL PA+ YL
Sbjct:   47 KKEGEGDDSWMTDTWHPANVAIPLSYFCVGFALNFLSTPLTYYMVHVLDASPAQQSVVRTMQSLPWSFKLAYGFLSDCVPIRGMRRKPYFILGWTIYLLCHLTLAALIQPSIGPLTSLLFLGTVGYMMADVMTDAIVVERSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQMFALNAFVPFVVLYPAMAYL 254          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A835Z8G1_9STRA (Biopterin transport-related protein BT1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.860e-22
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  256 AIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTLFLHGT-----EILHGYSSPSC----LRSVPRLVASPRLFQPKACPLRL---------------LLPCCLHTKIHGESRARVVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEER 765
            A+P SYFCVG   SF+  P++ Y+V  L A PSQQN +          ++++G+ S +     +R  P  +A   ++    C L L               LL  C        + A +VER++ E EE+RG MQAT YA RF G+++G + G  ++N+E WGWG+T  +V L+  + P+LV+ P   ++W  R
Sbjct:   11 AVPASYFCVGIAMSFLRTPVSYYLVHELGASPSQQNVVVTLAMLPWSFKLVYGFISDNFPIGGMRRKPYFIAGWFIYS--MCNLLLAATGRPGVQSVALLQLLGTCGFMMSDVTTDAIIVERSKNEPEETRGSMQATGYATRFCGSLLGSVLGTCVYNKERWGWGMTIGEVFLLNGLFPLLVVAP---FMWTLR 199          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.610e-11
Identity = 31/83 (37.35%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  538 VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIYLWEERSKETKGV 786
            VVE+ + E+  + G +QA+ Y  R+ G+ IG +GGA+L+N++ WGWGLT  ++  I ++ P++++ P + +L E++    KGV
Sbjct:  245 VVEKTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISELFWINALVPLVLVMPLMPFLLEDKKPREKGV 327          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A6H5KNB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.350e-9
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:  706 MSMTPVLVLGPAVIYLWEERSKETKGVKNQ 795
            MSM PVLVLGPA++YLWEERSKETKGVKNQ
Sbjct:    1 MSMMPVLVLGPALVYLWEERSKETKGVKNQ 30          
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Match: A0A482UNW4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UNW4_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 2.810e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:  244 RHHAAIPISYFCVGFLGSFVANPLNIYIVQTLNAQPSQQNTL 369
            + + AI ++YF VG + SF+A P+NIY+V TLNA+P  QNT+
Sbjct:   27 KENLAIIMAYFSVGLVSSFLATPMNIYLVNTLNAEPQMQNTI 68          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16385.4608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FZP1_ECTSI9.660e-13073.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBB7_9STRA9.890e-3639.82Folate-biopterin transporter n=1 Tax=Tribonema min... [more]
A0A7S2XY88_9STRA1.310e-3142.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TWA3_9STRA4.200e-2634.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U5H3_9STRA7.710e-2636.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6V1WMI5_HETAK4.720e-2234.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8G1_9STRA4.860e-2234.02Biopterin transport-related protein BT1 n=1 Tax=Tr... [more]
D8LI15_ECTSI3.610e-1137.35Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
A0A6H5KNB3_9PHAE8.350e-990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482UNW4_9ARCH2.810e-552.38Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16385contigEcto-sp13_S_contig16385:319..3168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score393.7
Seed ortholog evalue7e-107
Seed eggNOG ortholog2880.D7FZP1
Model size795
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
Ec32 ortholog descriptionFolate-biopterin transporter
Ec32 orthologEc-08_001180.1
Cds size795
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.969961-CDS-Ecto-sp13_S_contig16385:318..4201681462861.969961-CDS-Ecto-sp13_S_contig16385:318..420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16385 319..420 -
1681462861.9903297-CDS-Ecto-sp13_S_contig16385:1016..11721681462861.9903297-CDS-Ecto-sp13_S_contig16385:1016..1172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16385 1017..1172 -
1681462862.0028374-CDS-Ecto-sp13_S_contig16385:1365..15331681462862.0028374-CDS-Ecto-sp13_S_contig16385:1365..1533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16385 1366..1533 -
1681462862.015313-CDS-Ecto-sp13_S_contig16385:2231..23041681462862.015313-CDS-Ecto-sp13_S_contig16385:2231..2304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16385 2232..2304 -
1681462862.0255966-CDS-Ecto-sp13_S_contig16385:2872..31681681462862.0255966-CDS-Ecto-sp13_S_contig16385:2872..3168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16385 2873..3168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16385.4608.1prot_Ecto-sp13_S_contig16385.4608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16385 319..3168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16385.4608.1

>prot_Ecto-sp13_S_contig16385.4608.1 ID=prot_Ecto-sp13_S_contig16385.4608.1|Name=mRNA_Ecto-sp13_S_contig16385.4608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
QDAPLSAHLPPASSQGGLGANYTYSSVDTRRVGDGEDGVSRKSFGGPTGY
EYAPFVDNDSTSYGDASAKGEGGGGVISLTSRHHAAIPISYFCVGFLGSF
VANPLNIYIVQTLNAQPSQQNTLFLHGTEILHGYSSPSCLRSVPRLVASP
RLFQPKACPLRLLLPCCLHTKIHGESRARVVERARGEAEESRGQMQATCY
AIRFAGNVIGCLGGALLFNREAWGWGLTFRQVCLIMSMTPVLVLGPAVIY
LWEERSKETKGVKNQ
back to top

mRNA from alignment at Ecto-sp13_S_contig16385:319..3168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16385.4608.1 ID=mRNA_Ecto-sp13_S_contig16385.4608.1|Name=mRNA_Ecto-sp13_S_contig16385.4608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16385:319..3168- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGCCCCGTTATCGGCACACCTACCACCGGCGTCTTCGCAGGGGGG GCTCGGCGCTAACTACACCTATTCTTCTGTGGACACCCGCAGAGTTGGTG ATGGCGAGGACGGCGTCAGCCGCAAGAGTTTCGGCGGGCCCACGGGGTAC GAGTACGCGCCTTTCGTCGACAACGATTCCACTAGCTACGGCGATGCTTC AGCAAAGGGAGAGGGGGGGGGAGGCGTGATAAGCCTGACGAGCCGGCACC ACGCGGCGATACCCATCTCCTACTTCTGCGTCGGGTTTCTGGGCAGGTGA GACTTGCTCGGCGACGAATGGCGACGGCGGGATGGTGTTCCTCGTCATGG TTTCGGCGCCCACCGTAGACCTCGTTCGGTCCATTGTAGAGTAACAGTCA ATCTAGAATGGTAGAAGTACGTTGTAGCAGAGATGACAGACCAGGAGTAA CAATTACACTAGGTGTCTCTGGCGTTACTTTGGTCCTCGTCGGAAGTTGG AGCTTCTTGGGGGCCAGGGATCTAGTCATATATCCTCCGTGGTGGGATGC ATGTTGACGTCGTGCATGTCACCCCTGTGAGGTTTCTTGAATACTAGCGC GGGCATGAAGCAGTCTTGCAGGAGGTATTCTGTGTCTGTTGATCTATGAT ACCCCAATCGTCCACCCCTTGCCAGGTGCGTGGTCGATTCCGAAGCTGCC AAGAGCTAACGGATTGCTTTGCGCCTACCCGTTCGGGTACAACGCATAGA ACATACCCATTTGTTTTGTATAGCTCCTATTTTCTTCTTCTTCCTGTGTT GTTTCCAAACCTTGTTGGTGCCCTTCCCATGCCATCCGCCCTACTCCCGT GCCTACGTCGATAGCTTCGTGGCAAACCCGCTCAACATCTACATCGTCCA GACCCTCAACGCCCAGCCTTCCCAGCAGAACACGCTCGTGGNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCTTTGTCGTAGAAATAGAGTGTGAATGGACA GCTCCCACGGCCTTCGTGCACGCTGCCCGCAACAGTTTCTACATGGAACA GAAATACTCCATGGGTACTCGTCCCCTTCCTGCCTACGGTCCGTCCCTCG CCTTGTTGCGTCTCCTCGTTTATTCCAACCAAAGGCATGCCCCCTGAGGC TGCTGCTGCCGTGCTGTCTCCACACGAAGATCCACGGTGAATCACGTGCC AGAGTCATTACGTGCCAGCGTCGTTAGAGTTTTCGGGCGGCGTTCGTTGT CGCAGGGCAACCCCGTCGAGGCCAGCCAACCACTGTTTTATGTTCTGTAC ATTTTTTCCCCCCCAACCGACTGGTGGCCACTGCTGCCTCTACCAATGGT GCTGGCACTCTTGGCATTTACCTACTGGAAAACCTGCGTGTCCTAGGTGG TCGAGCGTGCCAGGGGCGAGGCGGAGGAGTCTCGAGGGCAGATGCAGGCG ACCTGCTACGCGATCAGGTTCGCCGGAAACGTCATCGGATGCTTGGGGGG CGCCTTGCTTTTCAACAGGGAGGCCTGGGGCTGGGGCCTCACCTTTAGGC AGGTGTGTAAGCGCACGCCATGGCTATTTCATGCCTGTCTCCAACGGCCA AAGGATGGCCGTTGAATTCTTGCGGCGGAACCGTTTGTGGTCCACTGGTT CGTCATGCTGAATTGTGCGGCGAGTTAGTTGTGTCGGCATTCCCGAATTT GTTGTGTTGCTGCTGTCGTTTCGGGTTATGCGTCAGCTTGAGTCGTGACC AAGCTCAGGCAACAGCAGTGCGCACTCCATTTCAGCCTCTGAGCGTTGCA CGCTGAAACCCCTTCTAAGTTTATTTTTAGTCGAACACACGGTATAGGTT TGTTTGAGAGTGTTGTGATTGCTCGTCGTTCAGGACGTCCAGGCTTTATG TAATTTTTCCGATACGTTTGTCCCCGTCAACCGCCGATACGTTTGTCCCC GTCAACCGTTGTTTTCAACCAAACGGTAAGCACCCCCTTTGGTGCCGCTG GCAGAGGACGCTGCAACCAAGGCCGTGTCCGATCGGCAGGGTGAACATTT CTGGTCTCTCCATGCTCGAAGCTGCTATTCAATCATCTGTTTAACCGTCG CGTCTCACTTTGTTTGTCTTCGCGGCTCGTCGTATCAATCGTCACCAGGT ATGCCTCATCATGAGCATGACGCCCGTGCTAGTGCTAGGGCCCGCCGTCA TTTACCTGTGGGAGGAACGAAGCAAGGAGACCAAGGGCGTGAAGAATCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16385:319..3168-

>mRNA_Ecto-sp13_S_contig16385.4608.1 ID=mRNA_Ecto-sp13_S_contig16385.4608.1|Name=mRNA_Ecto-sp13_S_contig16385.4608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16385:319..3168- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGCCCCGTTATCGGCACACCTACCACCGGCGTCTTCGCAGGGGGG
GCTCGGCGCTAACTACACCTATTCTTCTGTGGACACCCGCAGAGTTGGTG
ATGGCGAGGACGGCGTCAGCCGCAAGAGTTTCGGCGGGCCCACGGGGTAC
GAGTACGCGCCTTTCGTCGACAACGATTCCACTAGCTACGGCGATGCTTC
AGCAAAGGGAGAGGGGGGGGGAGGCGTGATAAGCCTGACGAGCCGGCACC
ACGCGGCGATACCCATCTCCTACTTCTGCGTCGGGTTTCTGGGCAGCTTC
GTGGCAAACCCGCTCAACATCTACATCGTCCAGACCCTCAACGCCCAGCC
TTCCCAGCAGAACACGCTCTTTCTACATGGAACAGAAATACTCCATGGGT
ACTCGTCCCCTTCCTGCCTACGGTCCGTCCCTCGCCTTGTTGCGTCTCCT
CGTTTATTCCAACCAAAGGCATGCCCCCTGAGGCTGCTGCTGCCGTGCTG
TCTCCACACGAAGATCCACGGTGAATCACGTGCCAGAGTGGTCGAGCGTG
CCAGGGGCGAGGCGGAGGAGTCTCGAGGGCAGATGCAGGCGACCTGCTAC
GCGATCAGGTTCGCCGGAAACGTCATCGGATGCTTGGGGGGCGCCTTGCT
TTTCAACAGGGAGGCCTGGGGCTGGGGCCTCACCTTTAGGCAGGTATGCC
TCATCATGAGCATGACGCCCGTGCTAGTGCTAGGGCCCGCCGTCATTTAC
CTGTGGGAGGAACGAAGCAAGGAGACCAAGGGCGTGAAGAATCAG
back to top