mRNA_Ecto-sp13_S_contig16376.4603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: D8LLL2_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI) HSP 1 Score: 504 bits (1298), Expect = 1.130e-175 Identity = 259/263 (98.48%), Postives = 261/263 (99.24%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV 789
+WKRDYGGKKA KNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKN DGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLS+VREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV
Sbjct: 17 EWKRDYGGKKADKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNADGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV 279
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A6H5JY40_9PHAE (U-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY40_9PHAE) HSP 1 Score: 317 bits (812), Expect = 8.410e-105 Identity = 190/341 (55.72%), Postives = 192/341 (56.30%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFE---------------------------------TPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKR---------------------------------------------------DVIKLNDPGDKEFVASRDVNNFVHLSK-----------------------------------------------------------------VREERVAELAKVAHADKIRQTKSTELIFR 576
+WKRDYGGKKAGKNGASRPLAFDCCALSLAPFE TPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKR DVIKLNDPGDKEFVASRDVNNFVHLS+ VREERVAELAKVAHADKIRQTKSTELIFR
Sbjct: 7 RWKRDYGGKKAGKNGASRPLAFDCCALSLAPFEIPPLLRLRGEQQLSTLIYLISPPPQTGSAAHFKTPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRVRSLLQWPQPAQPMADHTPTTPAENRGANTCSSRFIPQPVLPLFVGGKTRQDVIKLNDPGDKEFVASRDVNNFVHLSEXXXXXXXXXXXXXXXXXXXXXXLSVCYPNDIRSRLFNPPPLPQYSYRPXEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFR 347
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A836CDG8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA) HSP 1 Score: 298 bits (764), Expect = 5.850e-96 Identity = 148/260 (56.92%), Postives = 188/260 (72.31%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSA 780
+W RDYGGKK N RPL+FDCCA+SL PFETPVCTKEGV+FDILN+MPYV+KHKKNPVTGE L KDL++L+ +KN +GKWHCPVTFKVFNDNSRI+AI+++GNV+AAEAVEELN K K++ DLLTGE F + D+IKLNDP D+ A RD NNF HL ++RE + +H KIRQT +T+ IF+EI KR+ D ++ ++ +AAG LWKR +V ED+ G +T+ +GSFTS+A
Sbjct: 17 EWSRDYGGKKGAVNSGIRPLSFDCCAMSLGPFETPVCTKEGVVFDILNVMPYVKKHKKNPVTGEPLKNKDLIQLHFAKNNEGKWHCPVTFKVFNDNSRIVAIRTTGNVYAAEAVEELNLKTKNFEDLLTGEPFQRADIIKLNDPADEALCALRDANNFKHLKELREAEAKRQEQASHTSKIRQTLTTQQIFKEIEEKRQSDERDRTXXXXXXXXXXXXKDAEAVAAGAPLWKRLRVLLEDISEGTHVTTNVMAGSFTSTA 276
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S3UXG8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG8_HETAK) HSP 1 Score: 228 bits (582), Expect = 2.660e-72 Identity = 101/173 (58.38%), Postives = 133/173 (76.88%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELA 519
+WK +YGG K K + R L FDCCALSL+ +ETPVCTKEGVIFDIL IMPYV++H+KNP+ GE L PK L+RLN+ KN DG+WHCPVT+KVF D++ ++A++ +GNV+A +AV+ELN KAK+ DLLTGE F ++D++ L DP D A R+++NF HL +VREE LA
Sbjct: 17 EWKEEYGGHKKKKESSDRQLPFDCCALSLSTYETPVCTKEGVIFDILQIMPYVKQHRKNPLNGEPLAPKQLIRLNMQKNADGRWHCPVTYKVFTDHTHVVAVRPTGNVYAWDAVKELNLKAKNMTDLLTGEPFARKDLLHLQDPNDPAVAARRNLDNFTHLKEVREEAARRLA 189
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: W7T7R4_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R4_9STRA) HSP 1 Score: 234 bits (597), Expect = 2.820e-69 Identity = 123/274 (44.89%), Postives = 176/274 (64.23%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKI----RQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERL---------WKRGKVTTEDLVGGRIMTSGKTSGSFTSSAL 783
+WK G ++A + RPLAFD CALSL P+ETPVCT EGV+FDILN+ PYV+KHKKNP+TG ++T K++VRL ++KN +GKWHCPVTFK F D++ ++A+K SGNV+A EAVEELN + K+W DL+TGE FT++D+I L DP + +A RD++NF HL +VR E A +A + +KI R STE++ E +++ +A + + ERE L +R + EDL G+ +T+GK + SFT++ +
Sbjct: 17 EWKELGGKREAAGRSSYRPLAFDSCALSLQPYETPVCTPEGVLFDILNLFPYVQKHKKNPITGHSMTAKEIVRLTMAKNAEGKWHCPVTFKEFTDHTHVVAVKPSGNVYAYEAVEELNIRRKNWTDLMTGESFTRKDIITLQDPSNAAHMALRDISNFKHLEEVRAEEQARVAGASAEEKIASSIRTNASTEMVLAEFQRQQRERXXXEALRAAQAEAXXVEREXXXAXXXXXLRXXXXXXXXXRRRSILIEDLHPGKSVTTGKAAASFTATGV 290
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7R9YCF3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCF3_9STRA) HSP 1 Score: 207 bits (526), Expect = 2.220e-59 Identity = 90/172 (52.33%), Postives = 133/172 (77.33%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASR--PLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVA 510
+W+RD+GG+ ++ + L FDCCAL+L P+E PVCT +GV+FD+L I+PY++KHKK+P+TGEA+ PK L+RLN+ KN +GKWHCPVT+K F +SR++AI++SGNVF+ +AVEELN K K++ DL+TG+ F + D+I L DP + E + RD+++F HL ++R+E A
Sbjct: 17 EWRRDHGGRAVERSRGPKYEALPFDCCALTLTPYEDPVCTPDGVLFDLLAIVPYLKKHKKSPITGEAMKPKQLLRLNMQKNAEGKWHCPVTYKPFGPHSRVVAIRTSGNVFSYDAVEELNLKPKNFVDLVTGQAFLRSDIIWLQDPSNPELMRRRDISSFKHLEELRQEEAA 188
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S1XL59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL59_9STRA) HSP 1 Score: 192 bits (489), Expect = 4.360e-58 Identity = 88/173 (50.87%), Postives = 123/173 (71.10%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLA---FDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVA 510
+W RD GG++ G A F+CCALSL P+ETPV T +GVIFD+LNI+PY+++HK +P+TGE L P +L+RL + KN GKWHCPVTFK F +SR++A+K++GNVF+ +AV+ELN K K+ DL++GE F + DV+ L DP + E + RD+ F HL + R+E A
Sbjct: 17 EWARDRGGRQVDNGGGGSQYAALPFECCALSLTPYETPVATPDGVIFDLLNIVPYLKQHKVSPITGERLKPSELIRLKMHKNAAGKWHCPVTFKEFGAHSRVVALKNTGNVFSWDAVQELNLKPKNMRDLVSGEAFARGDVLWLQDPTNPEQMRKRDIATFTHLEQQRKEEAA 189
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S3HQ04_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ04_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.790e-57 Identity = 101/201 (50.25%), Postives = 142/201 (70.65%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCT--KEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHAD-KIRQTKSTELIFREIGAKR 594
+W ++YGGKK + ASRPL FD CALSL PF TPV GVIFD I+PY+++HK +PV+G+A+T KD++RL+++KN G+W CP+T KVF ++S ++AI SSGNV++ AV ELN K+K++ DL++GE F K DV+ L DP + E +A RD+NNF HL VREE +K + KIRQ+ ST + +EI ++R
Sbjct: 7 EWSQEYGGKKTTREAASRPLPFDHCALSLTPFRTPVLLGKNSGVIFDFEVIVPYLQEHKCDPVSGDAMTTKDIIRLHMTKNAAGEWECPITNKVFTNSSHVVAIASSGNVYSFGAVNELNIKSKNFTDLISGEPFKKSDVLTLQDPQNAEQMAKRDINNFSHLKTVREES----SKTREGESKIRQSLSTSNVMKEIESQR 203
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A7T106_NEMVE (RING-type E3 ubiquitin transferase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7T106_NEMVE) HSP 1 Score: 198 bits (503), Expect = 1.140e-56 Identity = 91/163 (55.83%), Postives = 127/163 (77.91%), Query Frame = 1
Query: 1 QWKRDYGGKK--AGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHL 483
+WK ++GGK+ AG+ A R L F CC+LSL PFE P+CTKEGVIFD++NI+PY++K+ +NPVTGE + K+L++L+ KN DGK+HCPVT+KVFN N+ I+AIK+SGNV+ +AVE+LN+KAK++ DLLT E FT++DVI L DP + +++NF HL
Sbjct: 17 EWKEEWGGKRPDAGERAAFRRLPFHCCSLSLQPFEHPLCTKEGVIFDLVNIVPYLKKYGRNPVTGEPMQVKELIKLHFHKNADGKYHCPVTYKVFNQNTNIVAIKTSGNVYCLDAVEQLNFKAKNFRDLLTDEAFTRKDVITLQDPSKLD---KFNMSNFHHL 176
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S2B164_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B164_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.310e-56 Identity = 80/151 (52.98%), Postives = 118/151 (78.15%), Query Frame = 1
Query: 1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVA 453
+WK +YGGKK K ++ L FD CALSL P+E+PVCT GVI+DI++I+P+++KH+ +P T + + KDL++L ++KN +G WHCPVTFKVF+D S+++A++++GNV+ EAV+ELN KAK+W DLLT E F+++D+I L DP D E V+
Sbjct: 34 EWKYEYGGKKRQKRSSTGQLPFDSCALSLQPYESPVCTSNGVIYDIVHIVPFLKKHRCDPATSKPMKFKDLIQLKMAKNTEGHWHCPVTFKVFSDFSKVVAVRTTGNVYTWEAVQELNVKAKNWKDLLTDEPFSRKDLITLQDPEDAELVS 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16376.4603.1 >prot_Ecto-sp13_S_contig16376.4603.1 ID=prot_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMback to top mRNA from alignment at Ecto-sp13_S_contig16376:243..3905- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16376.4603.1 ID=mRNA_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16376:243..3905- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16376:243..3905- >mRNA_Ecto-sp13_S_contig16376.4603.1 ID=mRNA_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16376:243..3905- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |