mRNA_Ecto-sp13_S_contig16376.4603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16376.4603.1
Unique NamemRNA_Ecto-sp13_S_contig16376.4603.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: D8LLL2_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 1.130e-175
Identity = 259/263 (98.48%), Postives = 261/263 (99.24%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV 789
            +WKRDYGGKKA KNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKN DGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLS+VREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV
Sbjct:   17 EWKRDYGGKKADKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNADGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAV 279          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A6H5JY40_9PHAE (U-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY40_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 8.410e-105
Identity = 190/341 (55.72%), Postives = 192/341 (56.30%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFE---------------------------------TPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKR---------------------------------------------------DVIKLNDPGDKEFVASRDVNNFVHLSK-----------------------------------------------------------------VREERVAELAKVAHADKIRQTKSTELIFR 576
            +WKRDYGGKKAGKNGASRPLAFDCCALSLAPFE                                 TPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKR                                                   DVIKLNDPGDKEFVASRDVNNFVHLS+                                                                 VREERVAELAKVAHADKIRQTKSTELIFR
Sbjct:    7 RWKRDYGGKKAGKNGASRPLAFDCCALSLAPFEIPPLLRLRGEQQLSTLIYLISPPPQTGSAAHFKTPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRVRSLLQWPQPAQPMADHTPTTPAENRGANTCSSRFIPQPVLPLFVGGKTRQDVIKLNDPGDKEFVASRDVNNFVHLSEXXXXXXXXXXXXXXXXXXXXXXLSVCYPNDIRSRLFNPPPLPQYSYRPXEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFR 347          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A836CDG8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA)

HSP 1 Score: 298 bits (764), Expect = 5.850e-96
Identity = 148/260 (56.92%), Postives = 188/260 (72.31%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSA 780
            +W RDYGGKK   N   RPL+FDCCA+SL PFETPVCTKEGV+FDILN+MPYV+KHKKNPVTGE L  KDL++L+ +KN +GKWHCPVTFKVFNDNSRI+AI+++GNV+AAEAVEELN K K++ DLLTGE F + D+IKLNDP D+   A RD NNF HL ++RE       + +H  KIRQT +T+ IF+EI  KR+ D  ++             ++   +AAG  LWKR +V  ED+  G  +T+   +GSFTS+A
Sbjct:   17 EWSRDYGGKKGAVNSGIRPLSFDCCAMSLGPFETPVCTKEGVVFDILNVMPYVKKHKKNPVTGEPLKNKDLIQLHFAKNNEGKWHCPVTFKVFNDNSRIVAIRTTGNVYAAEAVEELNLKTKNFEDLLTGEPFQRADIIKLNDPADEALCALRDANNFKHLKELREAEAKRQEQASHTSKIRQTLTTQQIFKEIEEKRQSDERDRTXXXXXXXXXXXXKDAEAVAAGAPLWKRLRVLLEDISEGTHVTTNVMAGSFTSTA 276          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S3UXG8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG8_HETAK)

HSP 1 Score: 228 bits (582), Expect = 2.660e-72
Identity = 101/173 (58.38%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELA 519
            +WK +YGG K  K  + R L FDCCALSL+ +ETPVCTKEGVIFDIL IMPYV++H+KNP+ GE L PK L+RLN+ KN DG+WHCPVT+KVF D++ ++A++ +GNV+A +AV+ELN KAK+  DLLTGE F ++D++ L DP D    A R+++NF HL +VREE    LA
Sbjct:   17 EWKEEYGGHKKKKESSDRQLPFDCCALSLSTYETPVCTKEGVIFDILQIMPYVKQHRKNPLNGEPLAPKQLIRLNMQKNADGRWHCPVTYKVFTDHTHVVAVRPTGNVYAWDAVKELNLKAKNMTDLLTGEPFARKDLLHLQDPNDPAVAARRNLDNFTHLKEVREEAARRLA 189          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: W7T7R4_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R4_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.820e-69
Identity = 123/274 (44.89%), Postives = 176/274 (64.23%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHADKI----RQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERL---------WKRGKVTTEDLVGGRIMTSGKTSGSFTSSAL 783
            +WK   G ++A    + RPLAFD CALSL P+ETPVCT EGV+FDILN+ PYV+KHKKNP+TG ++T K++VRL ++KN +GKWHCPVTFK F D++ ++A+K SGNV+A EAVEELN + K+W DL+TGE FT++D+I L DP +   +A RD++NF HL +VR E  A +A  +  +KI    R   STE++  E   +++     +A +  +      ERE         L          +R  +  EDL  G+ +T+GK + SFT++ +
Sbjct:   17 EWKELGGKREAAGRSSYRPLAFDSCALSLQPYETPVCTPEGVLFDILNLFPYVQKHKKNPITGHSMTAKEIVRLTMAKNAEGKWHCPVTFKEFTDHTHVVAVKPSGNVYAYEAVEELNIRRKNWTDLMTGESFTRKDIITLQDPSNAAHMALRDISNFKHLEEVRAEEQARVAGASAEEKIASSIRTNASTEMVLAEFQRQQRERXXXEALRAAQAEAXXVEREXXXAXXXXXLRXXXXXXXXXRRRSILIEDLHPGKSVTTGKAAASFTATGV 290          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7R9YCF3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCF3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.220e-59
Identity = 90/172 (52.33%), Postives = 133/172 (77.33%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASR--PLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVA 510
            +W+RD+GG+   ++   +   L FDCCAL+L P+E PVCT +GV+FD+L I+PY++KHKK+P+TGEA+ PK L+RLN+ KN +GKWHCPVT+K F  +SR++AI++SGNVF+ +AVEELN K K++ DL+TG+ F + D+I L DP + E +  RD+++F HL ++R+E  A
Sbjct:   17 EWRRDHGGRAVERSRGPKYEALPFDCCALTLTPYEDPVCTPDGVLFDLLAIVPYLKKHKKSPITGEAMKPKQLLRLNMQKNAEGKWHCPVTYKPFGPHSRVVAIRTSGNVFSYDAVEELNLKPKNFVDLVTGQAFLRSDIIWLQDPSNPELMRRRDISSFKHLEELRQEEAA 188          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S1XL59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL59_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.360e-58
Identity = 88/173 (50.87%), Postives = 123/173 (71.10%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLA---FDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVA 510
            +W RD GG++    G     A   F+CCALSL P+ETPV T +GVIFD+LNI+PY+++HK +P+TGE L P +L+RL + KN  GKWHCPVTFK F  +SR++A+K++GNVF+ +AV+ELN K K+  DL++GE F + DV+ L DP + E +  RD+  F HL + R+E  A
Sbjct:   17 EWARDRGGRQVDNGGGGSQYAALPFECCALSLTPYETPVATPDGVIFDLLNIVPYLKQHKVSPITGERLKPSELIRLKMHKNAAGKWHCPVTFKEFGAHSRVVALKNTGNVFSWDAVQELNLKPKNMRDLVSGEAFARGDVLWLQDPTNPEQMRKRDIATFTHLEQQRKEEAA 189          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S3HQ04_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ04_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.790e-57
Identity = 101/201 (50.25%), Postives = 142/201 (70.65%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCT--KEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHLSKVREERVAELAKVAHAD-KIRQTKSTELIFREIGAKR 594
            +W ++YGGKK  +  ASRPL FD CALSL PF TPV      GVIFD   I+PY+++HK +PV+G+A+T KD++RL+++KN  G+W CP+T KVF ++S ++AI SSGNV++  AV ELN K+K++ DL++GE F K DV+ L DP + E +A RD+NNF HL  VREE     +K    + KIRQ+ ST  + +EI ++R
Sbjct:    7 EWSQEYGGKKTTREAASRPLPFDHCALSLTPFRTPVLLGKNSGVIFDFEVIVPYLQEHKCDPVSGDAMTTKDIIRLHMTKNAAGEWECPITNKVFTNSSHVVAIASSGNVYSFGAVNELNIKSKNFTDLISGEPFKKSDVLTLQDPQNAEQMAKRDINNFSHLKTVREES----SKTREGESKIRQSLSTSNVMKEIESQR 203          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A7T106_NEMVE (RING-type E3 ubiquitin transferase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7T106_NEMVE)

HSP 1 Score: 198 bits (503), Expect = 1.140e-56
Identity = 91/163 (55.83%), Postives = 127/163 (77.91%), Query Frame = 1
Query:    1 QWKRDYGGKK--AGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVASRDVNNFVHL 483
            +WK ++GGK+  AG+  A R L F CC+LSL PFE P+CTKEGVIFD++NI+PY++K+ +NPVTGE +  K+L++L+  KN DGK+HCPVT+KVFN N+ I+AIK+SGNV+  +AVE+LN+KAK++ DLLT E FT++DVI L DP   +     +++NF HL
Sbjct:   17 EWKEEWGGKRPDAGERAAFRRLPFHCCSLSLQPFEHPLCTKEGVIFDLVNIVPYLKKYGRNPVTGEPMQVKELIKLHFHKNADGKYHCPVTYKVFNQNTNIVAIKTSGNVYCLDAVEQLNFKAKNFRDLLTDEAFTRKDVITLQDPSKLD---KFNMSNFHHL 176          
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Match: A0A7S2B164_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B164_9STRA)

HSP 1 Score: 187 bits (475), Expect = 3.310e-56
Identity = 80/151 (52.98%), Postives = 118/151 (78.15%), Query Frame = 1
Query:    1 QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIMPYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRILAIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFVA 453
            +WK +YGGKK  K  ++  L FD CALSL P+E+PVCT  GVI+DI++I+P+++KH+ +P T + +  KDL++L ++KN +G WHCPVTFKVF+D S+++A++++GNV+  EAV+ELN KAK+W DLLT E F+++D+I L DP D E V+
Sbjct:   34 EWKYEYGGKKRQKRSSTGQLPFDSCALSLQPYESPVCTSNGVIYDIVHIVPFLKKHRCDPATSKPMKFKDLIQLKMAKNTEGHWHCPVTFKVFSDFSKVVAVRTTGNVYTWEAVQELNVKAKNWKDLLTDEPFSRKDLITLQDPEDAELVS 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16376.4603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL2_ECTSI1.130e-17598.48RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JY40_9PHAE8.410e-10555.72U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CDG8_9STRA5.850e-9656.92RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7S3UXG8_HETAK2.660e-7258.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7T7R4_9STRA2.820e-6944.89RING-type E3 ubiquitin transferase n=2 Tax=Monodop... [more]
A0A7R9YCF3_9STRA2.220e-5952.33RING-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
A0A7S1XL59_9STRA4.360e-5850.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HQ04_9STRA3.790e-5750.25Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A7T106_NEMVE1.140e-5655.83RING-type E3 ubiquitin transferase n=2 Tax=Nematos... [more]
A0A7S2B164_9STRA3.310e-5652.98Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16376contigEcto-sp13_S_contig16376:243..3905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score507.7
Seed ortholog evalue3.3e-141
Seed eggNOG ortholog2880.D8LLL2
Preferred namePPIL2
Model size789
KEGG koko:K06532,ko:K10598
KEGG Pathwayko04120,ko05202,map04120,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0002376,GO:0003006,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007530,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016477,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0018992,GO:0019538,GO:0019787,GO:0022414,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0034450,GO:0034613,GO:0034641,GO:0036211,GO:0040011,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0048870,GO:0050900,GO:0051179,GO:0051641,GO:0051674,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0070727,GO:0071704,GO:0071944,GO:0072657,GO:0072659,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990778
Exons6
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0883@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-04_005350.1
EC5.2.1.8
Cds size789
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110,ko04090,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16376.4603.1prot_Ecto-sp13_S_contig16376.4603.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16376 243..3905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.5615652-CDS-Ecto-sp13_S_contig16376:242..3751681462861.5615652-CDS-Ecto-sp13_S_contig16376:242..375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 243..375 -
1681462861.578526-CDS-Ecto-sp13_S_contig16376:1066..11471681462861.578526-CDS-Ecto-sp13_S_contig16376:1066..1147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 1067..1147 -
1681462861.5998673-CDS-Ecto-sp13_S_contig16376:1598..17651681462861.5998673-CDS-Ecto-sp13_S_contig16376:1598..1765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 1599..1765 -
1681462861.6111991-CDS-Ecto-sp13_S_contig16376:2094..22291681462861.6111991-CDS-Ecto-sp13_S_contig16376:2094..2229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 2095..2229 -
1681462861.6211605-CDS-Ecto-sp13_S_contig16376:3204..33781681462861.6211605-CDS-Ecto-sp13_S_contig16376:3204..3378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 3205..3378 -
1681462861.6306179-CDS-Ecto-sp13_S_contig16376:3806..39051681462861.6306179-CDS-Ecto-sp13_S_contig16376:3806..3905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16376 3807..3905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16376.4603.1

>prot_Ecto-sp13_S_contig16376.4603.1 ID=prot_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
QWKRDYGGKKAGKNGASRPLAFDCCALSLAPFETPVCTKEGVIFDILNIM
PYVRKHKKNPVTGEALTPKDLVRLNISKNGDGKWHCPVTFKVFNDNSRIL
AIKSSGNVFAAEAVEELNYKAKSWNDLLTGEEFTKRDVIKLNDPGDKEFV
ASRDVNNFVHLSKVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKR
DAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSG
KTSGSFTSSALAV
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mRNA from alignment at Ecto-sp13_S_contig16376:243..3905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16376.4603.1 ID=mRNA_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16376:243..3905- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGAAGCGGGACTACGGGGGAAAGAAGGCCGGCAAGAATGGGGCGTC CAGGCCGCTCGCCTTCGACTGCTGTGCTCTCTCGCTGGCGCCTTTCGAGG TGAGAGTACAGCGAAACAGATGCGGTGGACGAGGGTGGGCCTTCTCTCGT CGCACGCCAAACAAGCTTTCCGCCGGTCTACAGCAGTACTCTCTGGGTTC TGCTTAGGAGCTAGCTGGGCGACTAACCGGCATCAAGTGTGCTGACGCGT GAGACGACCGATGGTGGAGTGTACGTTTTGCGACGGAGGCCGTCGTTGCT ACTCTTTTTAGTTTGAAAACCCTTCCCGGCGGTGTGCTCGCGCACCAATA ATGGATGTCGTTCGTGCAGAGACAACTTTGTGTTCTACATGAGACAGCGC AAGAGGGCGAGGCACTGACCTTTTGAAGATACCACCACTACCACGGCTAC GCGGCAAGCAACAACTTAACACCCTCATCTATCCCATCTCCCCTCCGCCA CAAACTGGATCTGCCGCACACTTTAAGACACCGGTGTGTACCAAGGAGGG TGTGATCTTCGACATCCTCAACATCATGCCGTACGTGAGGAAGCACAAGA AGAACCCCGTGACGGGGGAGGCTCTGACCCCGAAGGACTTGGTTCGGCTC AACATCTCCAAGAACGGAGACGGAAAGTGGCACTGCCCGGTCACTTTCAA GGTGGGCTACGATTTGTCGCCGGCAGTACCGGTGCTCCTCGTTGTAGGGG CAGGGGGGGTTCGTGCGCCAGACGCCACCAGCAGCAGGAGCGGTGGAATT TCAGGTGGACATTCTCCGCACGCTTCCTTCAAGGCCCCATGTACTGCACA CCTCGTCGTCATTGTTGTTATTGTGTTTTTTACTAGAGGTTGGTTTGTGT TGTCTTGATACATACTCCCATGGCGTCAGGAAGAAAGACCACATAACGGA GGTCGCCGCGGGGGAGGGGGTCTTCACACCGCCAAAAATAGCATGTCGCC TTGGAAGCCGCGGGGGAGCTGCGGCCAGTGCCACTCCTGCCATGTGGCTT GTTTGCGTTGTCTCTCTTCCGCGCTCTTTCCTCGACAAGAACGAACATCT CGTAGGCGGGACACAATGCCCACCGCCCTCCTCGTTGCTGTACCTAAATC ATCTCAAACTGCAGTTAACACCCGCACTTGAGAGCCTCTGGTTGTGGCCG ACGTTGAGGTTCTCAACACCTAGGGTTAGGCTACCATGGCCACTAAATAG GTAGGTTTAAGTGGTTCTTTTTCGGGCTCACAGTTTTTGTGCTCAAGTTG CTGTGTTCGAAATGATGTTGAGCACGAAGTTCTCTTGACTGTCAAGGTCT GACTAGGCCCGGGCGGTAACTGCATACCAGTCGGGAAGTTGTGTTGGAAC GCGAACTATCTACATGCCGGTAGGGTCTCTCGCACGGAGGTCTCTTGGAC GATTCGTCTCGCATACAGAAAGACCCTTGCATGAACGGCTCTTTCCACTC GAAGAATGGTGTCGATGTGTTTCGCAATGAAAAACAATCATCGCCGAAGG GTTAGCCCGTGGTCACAAAACCTTGTGCGCAAGGAAAGCCTGCTTTTGAA AAAATAGAGGTGAAAAAGCGGGTGGAATAGCGACACAAACACCCAAGGGG GCAACGGCGGAAAAAACAAAATGCAGGTGTTCAATGACAACAGCCGCATC CTGGCGATTAAGTCTTCCGGCAATGTGTTCGCCGCCGAGGCCGTCGAGGA GCTCAACTACAAGGCCAAGAGCTGGAACGACCTGCTCACCGGAGAGGAGT TCACGAAGCGGGTGAGGTGTTGCCGTAGGCAGTAACGCGGGGGGGGGGCG CTTAGCTCATAGATATTCACGAAACAATGAGGGGGGGGGGGGAATGAAGA CGGGAGTACACTCTCTCTGAACGCATCAAATCGTTTAAGCGTTGTGTATA GTCAACACCAAGCCCCGGTTTTCAGCCGGGAGGAGCCACGTAGGAAAGGA CTTTGTTACAGTGGCCCCAGCCAGCCTAGCCCATGGCGGACCACACCCCC GAGTCCCGCCAAGAATCATGCGCCCAACATGCGCTCATCACGATTCGTGC CCCGTGTTCTCTCGGTGTTTGTTGGGAAAAAACACGCCAGGACGTGATCA AGCTCAACGACCCGGGAGACAAGGAATTCGTGGCCTCGAGGGATGTTAAC AACTTCGTGCACCTCTCGAAGGTGCGGGAGGAGCGCGTGGCAGAGCTCGC CAAGGTGGCGCACGCGGACAAGATTCGACAGACCAAGTCCACCGAGCTCA TATTCAGGTGCATGGAGGGGGGGGGTGGTCGTTGGGGCTTGTAACTCCTT TTTCTCTGTCTTGATCGTCTTCCACGTCAAACCGGATCCAGAAAAAAAGA AGCTATTTCGTTCTTGATCCCGCTACTTTCTGAGCAAAACCGCTCCGACT GCGTAGCGTGTTGGCACGACTTTGAAGCCTTGTTCTGCTGCAGAACACCG CCTTTTTTTTCTTGCACGACTTCGATGTTGTCCAATCGTCCGGTTCTCTC ATAAGTATGTGCTGCATCTACGCCCCGGTGTACTAGTAGACTACGTCTTG CCGCGCTACGTTTCTCAGAAGCACAAAAACTACCATCGGCGTAAATCTTT AATTTCTGGTCCTTAATGACACCTTGCTCGATGTTGTAAGCGTTTGTTGA TTCTGCGGTCCTAAGGTGCACTCTCTCCGTTTCTTGTGTACCGCCCGGGT TCGTGCAGGGAGATTGGTGCGAAGCGCAAGCGGGACGCGGCCGAGAAGGC GGCGAAGGATGAAGAGGACAGAAAAACCGCCAAGGAGAGGTGTGGAAACG GGTGTTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCCGCTGCTGCTGCCTCTGTTGATCTTGATGTCGATACTGCT CCTGCTGATTCGTTGTCGTCGTCGTGTCCGTGTTGGGGGTGATGCGGGAA ACGGATCGCTCTCTCTTCCCCGCGCTTCCCATGCCAAGAATGATCACCTC TGCCCGGTGGTATCATTCCTGTCGAAGAAGAACGAAACACTCCTCCGTTC GCAGTCGCAGTCGGCCTGAAAGACAACCGACCGAAACCGAAACAAAGCCG AGATTAGAAAGGATTCTACTTGACTGCGTCCGTTTCGCACAAAGCTCGGA AAGCTTTGTCTTGAACGGCGTGAACTCGCCACCGCGATGACGTTTGTACA ATAGCTTGTATTCGTGTACGATCAATACAGCGTGCAACGTGTATGCGAGC GACATGTGCTACGGCACTAGTAGTCGCAGCGGCCAGAGCGTGGTAAGACC TTGTATGCAAGAGAGTAGTCAGCAACAGCAACGGCAACAGCAACGGCCCA AAAACTTCTTTGGGCCCATACCTTCCGTGTGCGTTCCCCTCATTTTTTCA CATTTCAAAAGTAACACAAGATGTTCCGTGTGTGCCCCCCCCTCCCTCCA CTCATTGACGGTTCACGAAAAACGCGAAAGGGAGGAGGCCGGGCTTGCTG CGGGGGAGAGGCTGTGGAAGCGAGGGAAGGTGACGACGGAAGATCTTGTC GGAGGCAGGATCATGACCAGCGGGAAGACGTCAGGCTCCTTCACCTCCAG CGCGCTTGCGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16376:243..3905-

>mRNA_Ecto-sp13_S_contig16376.4603.1 ID=mRNA_Ecto-sp13_S_contig16376.4603.1|Name=mRNA_Ecto-sp13_S_contig16376.4603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16376:243..3905- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGAAGCGGGACTACGGGGGAAAGAAGGCCGGCAAGAATGGGGCGTC
CAGGCCGCTCGCCTTCGACTGCTGTGCTCTCTCGCTGGCGCCTTTCGAGA
CACCGGTGTGTACCAAGGAGGGTGTGATCTTCGACATCCTCAACATCATG
CCGTACGTGAGGAAGCACAAGAAGAACCCCGTGACGGGGGAGGCTCTGAC
CCCGAAGGACTTGGTTCGGCTCAACATCTCCAAGAACGGAGACGGAAAGT
GGCACTGCCCGGTCACTTTCAAGGTGTTCAATGACAACAGCCGCATCCTG
GCGATTAAGTCTTCCGGCAATGTGTTCGCCGCCGAGGCCGTCGAGGAGCT
CAACTACAAGGCCAAGAGCTGGAACGACCTGCTCACCGGAGAGGAGTTCA
CGAAGCGGGACGTGATCAAGCTCAACGACCCGGGAGACAAGGAATTCGTG
GCCTCGAGGGATGTTAACAACTTCGTGCACCTCTCGAAGGTGCGGGAGGA
GCGCGTGGCAGAGCTCGCCAAGGTGGCGCACGCGGACAAGATTCGACAGA
CCAAGTCCACCGAGCTCATATTCAGGGAGATTGGTGCGAAGCGCAAGCGG
GACGCGGCCGAGAAGGCGGCGAAGGATGAAGAGGACAGAAAAACCGCCAA
GGAGAGGGAGGAGGCCGGGCTTGCTGCGGGGGAGAGGCTGTGGAAGCGAG
GGAAGGTGACGACGGAAGATCTTGTCGGAGGCAGGATCATGACCAGCGGG
AAGACGTCAGGCTCCTTCACCTCCAGCGCGCTTGCGGTA
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