prot_Ecto-sp13_S_contig1631.4573.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1631.4573.1
Unique Nameprot_Ecto-sp13_S_contig1631.4573.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.390e-26
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0
Query:    1 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 55
            MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGS+AVNTIYY+TLANV SGS
Sbjct:  118 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSEAVNTIYYVTLANVPSGS 172          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.380e-25
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    1 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 55
            MDAYCLLRF YLCLRICLFSSFWGMLVLTPVY LDGSDAVNTIYYLTLANV SGS
Sbjct:  120 MDAYCLLRFNYLCLRICLFSSFWGMLVLTPVYALDGSDAVNTIYYLTLANVPSGS 174          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-9
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    2 DAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASG 54
            DAY LL F ++CL IC+ SSFWGML+L P+Y  DG+ A    Y LT+ NV +G
Sbjct:   82 DAYLLLSFEWMCLMICVVSSFWGMLLLAPLYASDGNQAEG-FYQLTMINVPNG 133          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S4D9P4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9P4_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-6
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    1 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYY-LTLANVASGS 55
            MDAY  +R++ LC RIC FSSFWG+LVL P+Y    +D  N  +   +L NV  GS
Sbjct:   69 MDAYVFIRYLTLCFRICAFSSFWGLLVLLPIYA--SADIRNDNFSRFSLVNVTQGS 122          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: K0SUY1_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUY1_THAOC)

HSP 1 Score: 52.4 bits (124), Expect = 1.950e-6
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    1 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 55
            +DAY  LR+I +CL++ L SSFW M++L PVY   G    +  YY ++ANV  G+
Sbjct:  228 LDAYFYLRYIRMCLKLTLVSSFWAMVILCPVYA-SGGGGQSGCYYFSMANVLPGN 281          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LGF9_ECTSI4.390e-2694.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF22_9PHAE1.380e-2594.55ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZAA7_9STRA9.520e-954.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D9P4_HETAK1.020e-650.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K0SUY1_THAOC1.950e-645.45Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032880Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domainPFAMPF13967RSN1_TMcoord: 1..54
e-value: 2.0E-9
score: 37.4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..55
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1631contigEcto-sp13_S_contig1631:16096..16260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1631.4573.1mRNA_Ecto-sp13_S_contig1631.4573.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1631 16093..16260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1631.4573.1 ID=prot_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLAN
VASGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032880Csc1_N