mRNA_Ecto-sp13_S_contig1631.4573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI) HSP 1 Score: 110 bits (275), Expect = 7.100e-27 Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGS+AVNTIYY+TLANV SGS
Sbjct: 117 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSEAVNTIYYVTLANVPSGS 172
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.970e-25 Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 4 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
MDAYCLLRF YLCLRICLFSSFWGMLVLTPVY LDGSDAVNTIYYLTLANV SGS
Sbjct: 120 MDAYCLLRFNYLCLRICLFSSFWGMLVLTPVYALDGSDAVNTIYYLTLANVPSGS 174
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.890e-9 Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASG 165
G DAY LL F ++CL IC+ SSFWGML+L P+Y DG+ A Y LT+ NV +G
Sbjct: 80 GPDAYLLLSFEWMCLMICVVSSFWGMLLLAPLYASDGNQAEG-FYQLTMINVPNG 133
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S4D9P4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9P4_HETAK) HSP 1 Score: 55.5 bits (132), Expect = 1.620e-7 Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYY-LTLANVASGS 168
GMDAY +R++ LC RIC FSSFWG+LVL P+Y +D N + +L NV GS
Sbjct: 68 GMDAYVFIRYLTLCFRICAFSSFWGLLVLLPIYA--SADIRNDNFSRFSLVNVTQGS 122
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: K0SUY1_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUY1_THAOC) HSP 1 Score: 54.7 bits (130), Expect = 3.110e-7 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
G+DAY LR+I +CL++ L SSFW M++L PVY G + YY ++ANV G+
Sbjct: 227 GLDAYFYLRYIRMCLKLTLVSSFWAMVILCPVYA-SGGGGQSGCYYFSMANVLPGN 281
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S2W663_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W663_9STRA) HSP 1 Score: 48.5 bits (114), Expect = 4.620e-5 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANV 156
G+DAY LLRFI LC+R+ +F+SF+G +VL PVY G + LTL NV
Sbjct: 124 GLDAYMLLRFIRLCIRLTMFTSFFGGVVLIPVYY-SGRGQASGFNKLTLNNV 174
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S0XE76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE76_9STRA) HSP 1 Score: 48.5 bits (114), Expect = 4.690e-5 Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
G+DAY LLR+ LCL++CLF +FWG++VL P Y S ++ Y T+ NV +
Sbjct: 114 GLDAYMLLRYHVLCLKLCLFITFWGLVVLLPTYGTVHSKLLHWDKY-TIMNVVESN 168
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: W7UA14_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA14_9STRA) HSP 1 Score: 47.8 bits (112), Expect = 8.800e-5 Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYV 102
G+DAY LLR+I +CL+ICL S F+G++VL P+YV
Sbjct: 102 GLDAYMLLRYIQMCLKICLCSGFFGLVVLLPMYV 135
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A4D9D0H9_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0H9_9STRA) HSP 1 Score: 47.8 bits (112), Expect = 8.810e-5 Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYV 102
G+DAY LLR+I +CL+ICL S F+G++VL P+YV
Sbjct: 949 GLDAYMLLRYIQMCLKICLCSGFFGLVVLLPMYV 982 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1631.4573.1 >prot_Ecto-sp13_S_contig1631.4573.1 ID=prot_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANback to top mRNA from alignment at Ecto-sp13_S_contig1631:16093..16260+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1631.4573.1 ID=mRNA_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:16093..16260+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1631:16093..16260+ >mRNA_Ecto-sp13_S_contig1631.4573.1 ID=mRNA_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:16093..16260+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |