mRNA_Ecto-sp13_S_contig16295.4562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16295.4562.1
Unique NamemRNA_Ecto-sp13_S_contig16295.4562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: D8LJ61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ61_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 3.030e-136
Identity = 201/205 (98.05%), Postives = 204/205 (99.51%), Query Frame = 2
Query:    5 LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 619
            LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGE IVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLG+EGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLM+RNGF+EAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK
Sbjct:    3 LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGENIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGREGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMKRNGFDEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 207          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A6H5KRA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA4_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 1.130e-133
Identity = 199/205 (97.07%), Postives = 203/205 (99.02%), Query Frame = 2
Query:    5 LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 619
            LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGL VIDADKLGHESYQPGTRCFGKLVDAFGEKI+AGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLG+EGAESVVLEAAVLLEAGWDDLCDELWVVQVPP VARARLM+RNGF+EAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK
Sbjct:   37 LNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLAVIDADKLGHESYQPGTRCFGKLVDAFGEKIIAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGREGAESVVLEAAVLLEAGWDDLCDELWVVQVPPEVARARLMKRNGFDEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 241          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A6B1A9Z4_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1A9Z4_9CHLR)

HSP 1 Score: 186 bits (471), Expect = 2.880e-56
Identity = 103/177 (58.19%), Postives = 122/177 (68.93%), Query Frame = 2
Query:   62 VGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNE 592
            +GL GGIASGKSTV K L    G   IDAD LGH++Y+PGT  F ++V+AFGE +VA DGTIDR  LG  VFG+P  M RL  IVWP IR LAEA ++ L   G    VLEAAV++EAGW DL DE+WVV V    AR RLM RN F+  EADKRI SQ +TN ER   A V++SN+
Sbjct:    4 IGLTGGIASGKSTVVKQL-QELGAATIDADLLGHQTYEPGTETFKQVVEAFGEDLVAEDGTIDRSKLGPRVFGHPDGMKRLTDIVWPGIRALAEAELDRLAANGTSVAVLEAAVMIEAGWQDLVDEVWVVAVSRDTARERLMARNNFSAEEADKRIDSQ-ITNDERLKHADVMISND 178          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A2W1AGZ2_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AGZ2_9CHLR)

HSP 1 Score: 185 bits (470), Expect = 6.520e-56
Identity = 102/177 (57.63%), Postives = 121/177 (68.36%), Query Frame = 2
Query:   62 VGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNE 592
            +GL GGIASGKSTV+  L    G  +IDAD+LGH +Y+PGT  F ++V AFG  IV  DGTIDR  LG  VFG P  M RL  IVWP I  LA   +      G E  V+EAAVL EAGW+ L DE+WV+ VPPAVAR RLM+RNGF+  EADKRI SQ ++N ER ARA VV+S +
Sbjct:    4 IGLTGGIASGKSTVTGTLADL-GATIIDADRLGHRTYEPGTETFAQVVAAFGADIVGEDGTIDRPTLGGKVFGEPGAMTRLTDIVWPGIAALAVEEMAAARAAGVEVAVVEAAVLFEAGWETLVDEVWVISVPPAVARQRLMDRNGFSAEEADKRIGSQ-LSNAEREARADVVISTD 178          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A4D9CQ82_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ82_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.020e-55
Identity = 99/187 (52.94%), Postives = 127/187 (67.91%), Query Frame = 2
Query:   50 RPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDL 610
            RP V+G+ GGIASGKS V++      G+ V+DAD LGH SY  GT C+ +L+  FGE+IV  DG I+RRALG+ VF +P    RL+GIVWPEIR L E  +  LG+ G  + V+EAAV+LEAGW+D  DE+WVV   P VA+ RLM RN  +  +A +RI +Q MTNQER  +A  V+ N GT  DL
Sbjct:   17 RPLVIGVTGGIASGKSMVTRLCQGRYGVSVLDADILGHRSYAKGTPCYRQLLKTFGEEIVGEDGQINRRALGRIVFSSPQERNRLEGIVWPEIRRLMEEDLRALGETGIHAAVVEAAVMLEAGWEDAMDEVWVVAAEPEVAKTRLMSRNNLSAEDALRRIEAQ-MTNQERIEKADRVIWNNGTVADL 202          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A2E2YSE9_9GAMM (Dephospho-CoA kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2YSE9_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 4.550e-55
Identity = 99/189 (52.38%), Postives = 135/189 (71.43%), Query Frame = 2
Query:   56 SVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAE-SVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 619
            +++GL GGIASGKSTV++  G   G  VIDADKLGH +Y+PGTR F  +V+ FG++I+A DG+IDR+ LG  VFG+   + RL GIVWPEIR +AE  I     E    +VVLEAAVLLEAGW+D+ DE+WVV + P VA  R M+R+G      + R+A+Q ++N ER A+A V++ N G+EE+L+A+
Sbjct:    2 TIIGLTGGIASGKSTVAEITGQR-GAYVIDADKLGHAAYEPGTRAFSAVVEEFGDEILAEDGSIDRKVLGSKVFGSEGGLDRLTGIVWPEIRAMAEEEISTQKIEDPNRTVVLEAAVLLEAGWEDVVDEVWVVVIDPEVAIERAMKRDGVEREAIEARLAAQ-LSNAEREAKADVIIDNSGSEEELLAE 188          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A2A9HEN9_CHLB2 (Dephospho-CoA kinase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HEN9_CHLB2)

HSP 1 Score: 182 bits (462), Expect = 8.530e-55
Identity = 101/187 (54.01%), Postives = 126/187 (67.38%), Query Frame = 2
Query:   59 VVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 619
            V+GL GGIASGKSTV+       G+ VIDAD LGH +Y PGT  + K+V+ FG+ +VA DGTIDR+ LG  VFG P  + +L  IVWP IR LA  ++      G E VVLEAAVLLEAGW+DL DE+WVV V P +A  RL  RNG +   A  RIASQ +TN+ER AR  V++ N GT ++L A+
Sbjct:    3 VIGLTGGIASGKSTVTSFFRER-GIPVIDADILGHRTYDPGTETYQKVVETFGQDVVAADGTIDRKVLGSKVFGRPEELKKLTDIVWPGIRRLASEQLAEFEAAGNELVVLEAAVLLEAGWEDLVDEIWVVVVDPEIAVQRLAARNGLDPDAARARIASQ-LTNEERIARGDVIIENNGTLDELNAR 187          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A2D6BU38_9DELT (Dephospho-CoA kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BU38_9DELT)

HSP 1 Score: 181 bits (460), Expect = 1.660e-54
Identity = 104/185 (56.22%), Postives = 130/185 (70.27%), Query Frame = 2
Query:   59 VVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLV 613
            V+GL GGIA+GKSTV++ALG   G  VIDAD+LGH +Y+PG     ++ +AFG ++VA DGTIDR+ALG  VF  P+ + RL  IVWPEIR LAEA I       AE VVLEAAVLLEAGW+DL DE+WVV V P VA AR ++R G + + A  RI +Q ++NQER ARA  V+ N G E  L+
Sbjct:   10 VIGLTGGIAAGKSTVAQALGER-GAHVIDADRLGHRAYEPGREAHRQVAEAFGAEVVAPDGTIDRKALGAKVFDRPAELERLTAIVWPEIRRLAEAEIAAAR---AEVVVLEAAVLLEAGWEDLVDEIWVVVVEPEVAVARAVDRGGLDASAARARIDAQ-LSNQERKARANRVIDNGGDESALL 189          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A6L7UXB2_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7UXB2_9CHLR)

HSP 1 Score: 182 bits (461), Expect = 1.800e-54
Identity = 106/193 (54.92%), Postives = 128/193 (66.32%), Query Frame = 2
Query:   47 RRPSV--VGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 619
            R P++  +GL GGIASGKSTV   L    G   IDAD LGH++Y+PGT  F ++V AFGE +VA DGTIDR  LG  VFG+P  M RL  IVWP IR LAE  +  L  EG E  VLEAAV++EAGW DL DE+WVV V    AR RLM RN F+  EAD+RI SQ +TN ER   A V++SN+ + E   A+
Sbjct:   18 RNPTMRSIGLTGGIASGKSTVVNQL-RELGAATIDADILGHQTYEPGTETFTQVVAAFGEDLVAEDGTIDRSKLGPKVFGHPDGMKRLTDIVWPGIRALAEVELARLEAEGTEIAVLEAAVMIEAGWQDLVDEVWVVAVSRDTARERLMARNSFSAEEADRRIDSQ-ITNDERLKHADVMISNDCSMEVAAAR 208          
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Match: A0A7X3R448_9CHLR (Dephospho-CoA kinase n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X3R448_9CHLR)

HSP 1 Score: 181 bits (460), Expect = 2.120e-54
Identity = 105/187 (56.15%), Postives = 124/187 (66.31%), Query Frame = 2
Query:   50 RPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGEKIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGKEGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMERNGFNEAEADKRIASQPMTNQERAARATVVLSNEGTEEDL 610
            R   +GL GGIASGKSTV++      G+ VIDAD LGH +Y PGT  F  +V AFG  IVA DGTIDRRALG  VFG P  M RL  IVWP IR LA   +  L   G    +LEAAVLLEAGW+D+ DE+WV  V   +A ARL ERNG +EA A  RI SQ ++N+ER A A+VV+ N GT E+L
Sbjct:    6 RVHTIGLTGGIASGKSTVAEFF-RGRGVPVIDADILGHRTYDPGTGTFAAVVAAFGSDIVADDGTIDRRALGGKVFGKPEMMTRLTDIVWPGIRALASQELSDLEVAGTGIALLEAAVLLEAGWEDMVDEIWVTTVEADIAVARLAERNGLDEAAARARIDSQ-LSNEERIAAASVVIENNGTLEEL 190          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16295.4562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ61_ECTSI3.030e-13698.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRA4_9PHAE1.130e-13397.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1A9Z4_9CHLR2.880e-5658.19Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A2W1AGZ2_9CHLR6.520e-5657.63Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A4D9CQ82_9STRA4.020e-5552.94Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2E2YSE9_9GAMM4.550e-5552.38Dephospho-CoA kinase n=1 Tax=Gammaproteobacteria b... [more]
A0A2A9HEN9_CHLB28.530e-5554.01Dephospho-CoA kinase n=3 Tax=Chloroflexi TaxID=200... [more]
A0A2D6BU38_9DELT1.660e-5456.22Dephospho-CoA kinase n=1 Tax=Deltaproteobacteria b... [more]
A0A6L7UXB2_9CHLR1.800e-5454.92Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A7X3R448_9CHLR2.120e-5456.15Dephospho-CoA kinase n=3 Tax=Dehalococcoidia bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16295contigEcto-sp13_S_contig16295:1092..3351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size621
Hectar predicted targeting categoryother localisation
Exons4
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.1387699-CDS-Ecto-sp13_S_contig16295:1091..11361681462858.1387699-CDS-Ecto-sp13_S_contig16295:1091..1136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16295 1092..1136 +
1681462858.1493576-CDS-Ecto-sp13_S_contig16295:1970..21961681462858.1493576-CDS-Ecto-sp13_S_contig16295:1970..2196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16295 1971..2196 +
1681462858.1597457-CDS-Ecto-sp13_S_contig16295:2493..26571681462858.1597457-CDS-Ecto-sp13_S_contig16295:2493..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16295 2494..2657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.1710718-UTR-Ecto-sp13_S_contig16295:2657..26961681462858.1710718-UTR-Ecto-sp13_S_contig16295:2657..2696Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16295 2658..2696 +
1681462858.1803496-UTR-Ecto-sp13_S_contig16295:3206..33511681462858.1803496-UTR-Ecto-sp13_S_contig16295:3206..3351Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16295 3207..3351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16295.4562.1prot_Ecto-sp13_S_contig16295.4562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16295 1092..2657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16295.4562.1

>prot_Ecto-sp13_S_contig16295.4562.1 ID=prot_Ecto-sp13_S_contig16295.4562.1|Name=mRNA_Ecto-sp13_S_contig16295.4562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
GSQRRRTASVVLVHAPSSIGGRSYRRHCLWQEHRFEGPGHGVRAGGNRRR
QAGARELPAGHPLLRQAGGRVRGKDRGRGWHNRPPCAWTGGVRKPFQHGQ
AARHRLAGDSPPSGGEDRGAGQGGRRVRGSRGRRASRGRVGRPL*
back to top

mRNA from alignment at Ecto-sp13_S_contig16295:1092..3351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16295.4562.1 ID=mRNA_Ecto-sp13_S_contig16295.4562.1|Name=mRNA_Ecto-sp13_S_contig16295.4562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16295:1092..3351+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCTCAACGGAGGAGGACTGCTAGCGTCGTTCTCGTTCACGCGGTGGG TGTCCACCCCGTTTTGCCATTTCGCGGCGCCAATCTGGTTCAAGTGTGTG CGATAAGCGACATTCTACCATCCATCGCATACAGGATGCATACAGGGCGC TCTTGATACCTCATACGTCCGAGAAACCGATCGGTCGCAAGCCTCTGGCG GCTAGGTTTGGAGCTCGAATTTTATTGAATAGTCTCCAACACATGATGGG GCAGTACATTTGAAATGTGGCGAGCGCCCGTTCCCGAAGGTGTACAAATA CAGTTGTACCGCAGTTGTACCGTGTATTGCTTGTAGTACGTAGTCTTGTA CGAGTAGATTTGGACAGCTGCACGCATTATAATCGTTTGTTCATGAGTGT ACTTGAGCGAAGCAACCGCTGCACGCGCGCGTTAGCAATGAAGGCACGCA CCGTGGGGACCCTCTCCTGTGTCGCCCCATATCATGACTCGTCAGTTGCG ATGCAAGAGTTGCCTCGTTGCGTAAGATACCACACCCCCTAAGCCGGTTT TCACGGGTTTTCAAAAGACGATCACCGGTACAACCGCAGCAGCTCTGCAG CAATACAATGGCTACGCTGAAAATGGCGGCGTTGGCACCGTCTCGTCGAG AAAAAAAGAAATCATTCGTATTTTTTTGGCTTCCTCTTCGCCGTGGAGTA TCCCAGCTTTAAGAATCGGCCAGAGGGGGTGTTGTATCTGACGCAATCTT CAAGAGTATTCATGAAACGCTCGAGGGTGATTCTGTCAGCATTCTCAATG ACATCTCTCCTTTTTTGTGACGTTTGTTCGACGGCTCTCACTTTTTCGCA TGTGACATATATCATGGGTGTGGCAACAGCCGTCGTCCATCGGTGGTCGG TCTTATCGGCGGCATTGCCTCTGGCAAGAGCACCGTTTCGAAGGCCCTGG GCACGGCGTGCGGGCTGGAGGTAATCGACGCCGACAAGCTGGGGCACGAG AGCTACCAGCCGGGCACCCGCTGCTTCGGCAAGCTGGTGGACGCGTTCGG GGAAAAGATCGTGGCCGGGGATGGCACAATCGACCGCCGTGCGCTTGGAC AGGCGGTAAGGTGCAGGTCGTGCTTTGGAGTGTTCTTTATTCCGGCGTGC TGCGGTACAGTACTACACCCCTTGGAGCGAAAGACCTTGCACGGGTTTTC GATCGATCCTTCGTCCACCCAACCCGGCGCACACCCTCAAAACACACCAT TACTGCTGTTGTATTCTACGTAGACAGTTGACAGGGTGTTGGACAATCTG CCAACCCACATTGCATGGACGACGATCACGACGACGCGTGGTCTTCAATG TCTAGTTCTTCCTTTACCGGCTCAATGCTTTTCGTTGGTCCTCACGCATC AGGTGTTCGGAAACCCTTCCAACATGGCCAGGCTGCAAGGCATCGTTTGG CCGGAGATTCGCCTCCTAGCGGAGGCGAGGATCGAGGGGCTGGGCAAGGA GGGCGCCGAGTCCGTGGTTCTCGAGGCCGCCGTGCTTCTAGAGGCCGGGT GGGACGACCTCTGTGACGAGCTGTGGGTCGTCCAGGTGCCCCCGGCAGTG GCGCGGTATGTGTACATTATGGATGTGGTACGGTATTTGTGGCGTTTTTT TGTTGGCTATGTTTGGGGTTGCTGCTCGACAGACGGGGTGCGTTGACGTT TTTTTTATCGGCTCTCGCTTCTTCGGTCTAGCGGCGTTTATCGGCAGGGG GTAAGAGCAATCGCGCTGTCTTCCTGTGCTACAGCAGTACTTAGTTTCCA ATGGTGCACAGGGCGCGCGACTGGTGAAAAATGAAAGAGGAGTTCAAGTA GCCTCGACGGACAAGGAGGTCAGGCACACAAGAATTCGTGTCTCGAAGCG TCCGTCGTGTCGTGTCTTGAACTCACAAGCGACAGATCGCCGATGTACGA GTCTCTAATCCTTGCGGAGACCGGGTTGTGCTCTGCGCTCTTCCCCACAC AAACCTTTCTCATGGTCTTCAGAGCACCGTTCATTGCAACCGCCTCGTAA CGCAGGCGAAAACCATGCCCGCTCGATGTTTGCCGTGAAAAAACCCAACG CACGCACGCTTTCAGGGCGCGATTGATGGAACGCAACGGGTTCAACGAGG CGGAGGCCGACAAGAGGATAGCCTCGCAGCCCATGACCAACCAAGAGAGA GCGGCCCGTGCGACAGTGGTGCTCTCCAACGAGGGCACGGAGGAGGACTT GGTGGCGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16295:1092..3351+

>mRNA_Ecto-sp13_S_contig16295.4562.1 ID=mRNA_Ecto-sp13_S_contig16295.4562.1|Name=mRNA_Ecto-sp13_S_contig16295.4562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16295:1092..3351+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCTCAACGGAGGAGGACTGCTAGCGTCGTTCTCGTTCACGCGCCGTC
GTCCATCGGTGGTCGGTCTTATCGGCGGCATTGCCTCTGGCAAGAGCACC
GTTTCGAAGGCCCTGGGCACGGCGTGCGGGCTGGAGGTAATCGACGCCGA
CAAGCTGGGGCACGAGAGCTACCAGCCGGGCACCCGCTGCTTCGGCAAGC
TGGTGGACGCGTTCGGGGAAAAGATCGTGGCCGGGGATGGCACAATCGAC
CGCCGTGCGCTTGGACAGGCGGTGTTCGGAAACCCTTCCAACATGGCCAG
GCTGCAAGGCATCGTTTGGCCGGAGATTCGCCTCCTAGCGGAGGCGAGGA
TCGAGGGGCTGGGCAAGGAGGGCGCCGAGTCCGTGGTTCTCGAGGCCGCC
GTGCTTCTAGAGGCCGGGTGGGACGACCTCTGTGA
back to top