mRNA_Ecto-sp13_S_contig16293.4561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16293.4561.1
Unique NamemRNA_Ecto-sp13_S_contig16293.4561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 7.930e-165
Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENTMSLPPPSRRPSPRGLPHVAFRALFAESGAEVLMGRGETPRKNEGGTCSLRAKL 738
            NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLP GRGPY ALRRRPSSAPDALLVVCGDHFGLIVDRD GLMEAGGSS GGKGGLVGRVD+AIARGDRR A+ LLSLEASHGRVSAQKGRLPWTV+CSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSD+G PRHL WNGA LDGTWDVVE+TMSLPPPSR PS RGLPHVAFRALFAESGAEVLMG GETPRK+EGGTCSLRAKL
Sbjct:  238 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPGGRGPYFALRRRPSSAPDALLVVCGDHFGLIVDRDSGLMEAGGSSRGGKGGLVGRVDDAIARGDRRRALELLSLEASHGRVSAQKGRLPWTVNCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDDGVPRHLGWNGARLDGTWDVVESTMSLPPPSRSPSSRGLPHVAFRALFAESGAEVLMGGGETPRKDEGGTCSLRAKL 483          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: L1JSR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JSR4_GUITC)

HSP 1 Score: 147 bits (371), Expect = 8.410e-39
Identity = 82/199 (41.21%), Postives = 105/199 (52.76%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDR------DPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENT 579
            NKWR+EM   G VWKEWG+A+D FDQH+Y+ERWE LP G+GPYLAL R      +A+L+VCGDHF   +DR      DP   +           L   VD+ + +GDR  AI  LSLE  HGR+S   G+  W +D +LHPW+            I    LS D V VK A        R + W G      W + E++
Sbjct:  174 NKWRIEMREDGKVWKEWGYARDEFDQHIYLERWELLPEGKGPYLALTRDERYGREAILIVCGDHFNFAMDRPTKMPFDPQRQQVAS--------LQDLVDSLVDKGDREEAIKYLSLEGCHGRIS---GKQAWVIDNALHPWM------------IGKKILSPDEVQVKYA-------ERKVLWKGE----EWHIFEDS 338          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP)

HSP 1 Score: 139 bits (349), Expect = 1.490e-35
Identity = 78/199 (39.20%), Postives = 102/199 (51.26%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDR------DPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENT 579
            NKWR+EM   G VWKEWG+AKD FDQH+Y+ERWE LP G+G YLA+RR      DA+L+VCG+HF  ++DR      DP               L   VD  +  G+R  A+  LSLE  HGRVS   G   W VD +LHPW   +R        ++PD +   +   K            + W G      W +VE++
Sbjct:  176 NKWRIEMREDGKVWKEWGYAKDEFDQHIYLERWELLPEGKGRYLAIRRDERYGRDAILIVCGNHFNFVMDRPTKMPFDPERQSHAS--------LQDLVDKLVQEGNREEAMKYLSLEGCHGRVS---GANAWVVDNALHPWKIGKR-------LLSPDEVMVKYGENK------------VMWKGE----QWHIVEDS 340          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.640e-34
Identity = 87/201 (43.28%), Postives = 108/201 (53.73%), Query Frame = 1
Query:    1 NKWRVE---MGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAP---DALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENTMS 585
            NKWR+E     P  DVWKEWGFA+D   QH+YMERWER+  G GPYLALRRRP ++    DA L+VCGDHFG + DR      A     G    LV  VD A+ RGDR  A   L L+A HG +  + G   W +D SL PWL      +G+ L  + D          S+GG +       +WNGA     W V+E T +
Sbjct:  159 NKWRIEARQQRPRCDVWKEWGFARDEHGQHIYMERWERVKGGTGPYLALRRRPEASGGGRDAFLIVCGDHFGYVEDR----AAAARGDWGRYASLVEVVDAAVKRGDRGAAEAYLDLKACHG-MRREGGA--WVIDYSLQPWL------VGTTLLHSSDL-------ELSSGGKE------FKWNGA----IWAVLECTFT 329          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S2X7A1_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7A1_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 1.740e-25
Identity = 62/145 (42.76%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR-RPSSAPD---ALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRR 423
            N+WR+E+ P G+ +KE+  A D   Q VYMERW+  P G+GPYLALRR +P +A D   +LL+V G+HF    DR   L    G+S   KGG    VD A   GDR     +L LE S+G V   +G   W +  S  PW + +R
Sbjct:  177 NRWRIELSPNGESFKEFSVALDEHKQAVYMERWQMYPQGKGPYLALRRMKPQNAVDHRESLLIVVGNHFAFARDRKHPLPLFSGAS---KGGCASLVDAAFRAGDREKMEQMLDLEGSYGCVCDHEGNPTWEIKMSTLPWRQGQR 318          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S3Z9A1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9A1_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.380e-24
Identity = 62/153 (40.52%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR-RPSSAPD---ALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLT 447
            N+WR+E+ P G+ +KE+  A D   Q VYMERW   P G+GPYLA+R  +P +A D    LL+V G+HF    DR   L    G S   KGG    VD A   G+R     +L+LE S+GRV   +G   W +  S  PW + +R      LT
Sbjct:  177 NRWRIELSPNGESFKEFSVALDEHKQAVYMERWAMYPNGKGPYLAMRLVKPENAADHRETLLIVVGNHFAFARDRKHPLPSFPGVS---KGGCASLVDAAFRAGEREKMEQMLNLEGSYGRVCDHEGNPTWEIKMSTLPWRQGQRLLKPKALT 326          
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S4PHR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PHR7_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 9.820e-22
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 1
Query:    1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR----RPSSAPDALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGR-----------LPWTVDCSLHPWLENRRPF 429
            N+WR+E+      WKEW   +D+FDQH+YME W ++    G  +A+ R    +      A+LVV G++F  + DRD  L  AG S     G L+  +D A  + DR   +  LSL A HG++                 LPW +  SLHPW E ++ F
Sbjct:  187 NQWRIELNDDRSKWKEWSIVRDSFDQHLYMEMWVKMHNSNGRKIAMFREVDEKNGKKRPAILVVSGNYFNYLEDRDVDLESAGDS-----GSLIELIDKAATQKDRTTLLSYLSLTAHHGQIDPTPSPSPSSFPLSSLPLPWMIHRSLHPWKERKQLF 339          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXJ2_ECTSI7.930e-16592.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1JSR4_GUITC8.410e-3941.21Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0E054_9CRYP1.490e-3539.20Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A835YWZ2_9STRA1.640e-3443.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2X7A1_9EUKA1.740e-2542.76Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A7S3Z9A1_9EUKA2.380e-2440.52Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4PHR7_9EUKA9.820e-2234.81Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16293contigEcto-sp13_S_contig16293:1869..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score460.3
Seed ortholog evalue5.5e-127
Seed eggNOG ortholog2880.D7FXJ2
Model size741
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2C8UU@1,2S355@2759
Cds size723
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.040465-CDS-Ecto-sp13_S_contig16293:1868..22421681462858.040465-CDS-Ecto-sp13_S_contig16293:1868..2242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16293 1869..2242 -
1681462858.0559065-CDS-Ecto-sp13_S_contig16293:2538..27501681462858.0559065-CDS-Ecto-sp13_S_contig16293:2538..2750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16293 2539..2750 -
1681462858.0726864-CDS-Ecto-sp13_S_contig16293:3352..34441681462858.0726864-CDS-Ecto-sp13_S_contig16293:3352..3444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16293 3353..3444 -
1681462858.085313-CDS-Ecto-sp13_S_contig16293:3884..39291681462858.085313-CDS-Ecto-sp13_S_contig16293:3884..3929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16293 3885..3929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.0963104-UTR-Ecto-sp13_S_contig16293:3929..39471681462858.0963104-UTR-Ecto-sp13_S_contig16293:3929..3947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16293 3930..3947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16293.4561.1prot_Ecto-sp13_S_contig16293.4561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16293 1869..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16293.4561.1

>prot_Ecto-sp13_S_contig16293.4561.1 ID=prot_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
MGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDA
LLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAI
GLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLS
ADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENTMSLPPPSRRPSPR
GLPHVAFRALFAESGAEVLMGRGETPRKNEGGTCSLRAKL*
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mRNA from alignment at Ecto-sp13_S_contig16293:1869..3947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16293.4561.1 ID=mRNA_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16293:1869..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTGGAGGGTGGAGATGGGGCCCGGAGGGGATGTCTGGAAGGAGTG GGGGTTCGCTAAGGTGGCAGTCTTGCTCTTGTGGTTGTGACGGTGGTTGC TCATGACGATGCTATTCGTGCGTGTATAATGTCGGCCCCGTTTCACTCCG CTGTAATAGTGCACAATGTTTTCCACTACTTTCCCCTCTTCATTTGCAGT TTTGAGTTCTAGAAAATTGCCATTCGAGGCTTGTATACAAGCATCAAGCC CTCCTCCCCACCGCATTGACGGCGTTGTGGTGACAGCGTCCCCTTATCAT GCCTAATCCTTCCCCCTTTGTCTCAGATCCGGACAGGTACTTTAAAAAGA ACGGCTTGCGTGCTAGAGTCAACGTGTTGATCCTTGTTGTGGGCGTGAAG CGCAAGACAAACCGAGCGATTTACTTGAGAGGACCGTAAACAGATACCGG TGACACATCTCTCCATGTGCTCGACCTCTTGTTCTGTCGTTGTTCCCTTC TAGGACGCGTTTGATCAGCACGTGTACATGGAGAGGTGGGAGAGACTCCC GGCGGGTCGAGGGCCGTACTTGGCGCTTCGAAGACGCCCATCGAGGTGAC ACGAGAAAAAAATGTAGAGACAGCAGGAACAACGGGATGAATCGAGTTAT GTATGTTGTTCATGTATGAACACTACAGTGCCCACCTTGAAGCAGCAAGA GTCTTATTTCACCAAGCTATACCGCTTGCTCCTGGCCGCTCGGACGTCTC GAAAGCGGAGGGAAAAAGGCGTGCTGACGCCTTTGAAGATTGTACATGTG TCAAGGGTAGTTCGCACAAATAGGTGGAAGATTTCCCAAACGTTCGACCC TGAAAATACTTCTTCGTCTGCCACTCATCATTTGGGTGCCGACGATCGAT GTTCAAGAATGAATCCCAGCAGGGATTGGGTGTGGATATTCCGTGCAGGT CTTAGCCTGGTGTAGGTGCCGCTGCAGGCAAAGATGGGCCCAAGGGAACG CCCGTTTCCTTCTAGTTGAGCTGGTTGTTTCTTCCTCCTCCTGCCGGAAC ACTCTGACATGATGGAATGCTCGAATACGAGCAGAATGGAAAGGCGCGAT GTTGTGGCAAGCATGGTGACAGCTAGTGGAGGGACTCCGTGCAATGACCT GCGCCCAGCACCTAGTGACTCCTCGAACCCCCACCACTTTTTGTCAGCGC TCCCGACGCTCTCCTCGTGGTGTGCGGGGATCACTTCGGCCTTATTGTGG ACCGGGATCCCGGTTTGATGGAGGCAGGGGGCAGCAGCGGTGGCGGTAAG GGCGGGTTGGTCGGTCGGGTGGACAACGCGATCGCTCGAGGGGATCGGCG GATGGCAATCGGGCTTCTGTCGCTGGAGGCTTCGCATGGAAGGGTCAGTG CACAAAAAGGTAAGGTCTTTCGCTTTTTCTTCGGGGAAGCTTTGTGCTTG GGCGGCTGTGAGCATCTCCCAGTTTCCTGCCGAACTCAACCCTGGTTCCC AAATCGGAGTCTATCGAGGTGTATCGTTTCCTCGAGGGCAACTCCTCCAA CCGATCGCCCGTAAACCTAGCACCTTTCAACAGGCCCTGCCTGTGGCAGT TGAACAGGCTGGTTGGACATAGACGAGGCATGTGTACAGGAGTAGTTACC GTCTTCCCAACCCGCTCCTTACCCTGCCACCCCAAAAATCGATGCCCATG TTCAGGACGTTTGCCTTGGACGGTAGACTGCTCCCTCCACCCCTGGCTGG AGAACCGACGACCGTTCTTGGGATCGGTTCTCACGATCGCGCCCGACAGC CTGTCTGCCGACTGGGTGGGCGTGAAGAGCGCAGGAGGCAGCGATAACGG TAATCCGAGGCACCTCCGGTGGAACGGAGCCCCGTTGGATGGCACCTGGG ACGTAGTCGAGAACACCATGTCGCTGCCACCGCCATCGCGCCGACCATCT CCCAGAGGATTGCCGCACGTGGCGTTCAGGGCTTTGTTTGCGGAGTCTGG AGCCGAAGTTTTGATGGGACGGGGAGAGACACCTAGAAAAAACGAAGGGG GCACCTGCTCTCTTCGTGCGAAGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16293:1869..3947-

>mRNA_Ecto-sp13_S_contig16293.4561.1 ID=mRNA_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16293:1869..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCCCGGAGGGGATGTCTGGAAGGAGTGGGGGTTCGCTAAGGACGC
GTTTGATCAGCACGTGTACATGGAGAGGTGGGAGAGACTCCCGGCGGGTC
GAGGGCCGTACTTGGCGCTTCGAAGACGCCCATCGAGCGCTCCCGACGCT
CTCCTCGTGGTGTGCGGGGATCACTTCGGCCTTATTGTGGACCGGGATCC
CGGTTTGATGGAGGCAGGGGGCAGCAGCGGTGGCGGTAAGGGCGGGTTGG
TCGGTCGGGTGGACAACGCGATCGCTCGAGGGGATCGGCGGATGGCAATC
GGGCTTCTGTCGCTGGAGGCTTCGCATGGAAGGGTCAGTGCACAAAAAGG
ACGTTTGCCTTGGACGGTAGACTGCTCCCTCCACCCCTGGCTGGAGAACC
GACGACCGTTCTTGGGATCGGTTCTCACGATCGCGCCCGACAGCCTGTCT
GCCGACTGGGTGGGCGTGAAGAGCGCAGGAGGCAGCGATAACGGTAATCC
GAGGCACCTCCGGTGGAACGGAGCCCCGTTGGATGGCACCTGGGACGTAG
TCGAGAACACCATGTCGCTGCCACCGCCATCGCGCCGACCATCTCCCAGA
GGATTGCCGCACGTGGCGTTCAGGGCTTTGTTTGCGGAGTCTGGAGCCGA
AGTTTTGATGGGACGGGGAGAGACACCTAGAAAAAACGAAGGGGGCACCT
GCTCTCTTCGTGCGAAGTTGTGA
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