mRNA_Ecto-sp13_S_contig16293.4561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI) HSP 1 Score: 473 bits (1218), Expect = 7.930e-165 Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENTMSLPPPSRRPSPRGLPHVAFRALFAESGAEVLMGRGETPRKNEGGTCSLRAKL 738
NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLP GRGPY ALRRRPSSAPDALLVVCGDHFGLIVDRD GLMEAGGSS GGKGGLVGRVD+AIARGDRR A+ LLSLEASHGRVSAQKGRLPWTV+CSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSD+G PRHL WNGA LDGTWDVVE+TMSLPPPSR PS RGLPHVAFRALFAESGAEVLMG GETPRK+EGGTCSLRAKL
Sbjct: 238 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPGGRGPYFALRRRPSSAPDALLVVCGDHFGLIVDRDSGLMEAGGSSRGGKGGLVGRVDDAIARGDRRRALELLSLEASHGRVSAQKGRLPWTVNCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDDGVPRHLGWNGARLDGTWDVVESTMSLPPPSRSPSSRGLPHVAFRALFAESGAEVLMGGGETPRKDEGGTCSLRAKL 483
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: L1JSR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JSR4_GUITC) HSP 1 Score: 147 bits (371), Expect = 8.410e-39 Identity = 82/199 (41.21%), Postives = 105/199 (52.76%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDR------DPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENT 579
NKWR+EM G VWKEWG+A+D FDQH+Y+ERWE LP G+GPYLAL R +A+L+VCGDHF +DR DP + L VD+ + +GDR AI LSLE HGR+S G+ W +D +LHPW+ I LS D V VK A R + W G W + E++
Sbjct: 174 NKWRIEMREDGKVWKEWGYARDEFDQHIYLERWELLPEGKGPYLALTRDERYGREAILIVCGDHFNFAMDRPTKMPFDPQRQQVAS--------LQDLVDSLVDKGDREEAIKYLSLEGCHGRIS---GKQAWVIDNALHPWM------------IGKKILSPDEVQVKYA-------ERKVLWKGE----EWHIFEDS 338
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP) HSP 1 Score: 139 bits (349), Expect = 1.490e-35 Identity = 78/199 (39.20%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDALLVVCGDHFGLIVDR------DPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENT 579
NKWR+EM G VWKEWG+AKD FDQH+Y+ERWE LP G+G YLA+RR DA+L+VCG+HF ++DR DP L VD + G+R A+ LSLE HGRVS G W VD +LHPW +R ++PD + + K + W G W +VE++
Sbjct: 176 NKWRIEMREDGKVWKEWGYAKDEFDQHIYLERWELLPEGKGRYLAIRRDERYGRDAILIVCGNHFNFVMDRPTKMPFDPERQSHAS--------LQDLVDKLVQEGNREEAMKYLSLEGCHGRVS---GANAWVVDNALHPWKIGKR-------LLSPDEVMVKYGENK------------VMWKGE----QWHIVEDS 340
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.640e-34 Identity = 87/201 (43.28%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 1 NKWRVE---MGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAP---DALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDNGNPRHLRWNGAPLDGTWDVVENTMS 585
NKWR+E P DVWKEWGFA+D QH+YMERWER+ G GPYLALRRRP ++ DA L+VCGDHFG + DR A G LV VD A+ RGDR A L L+A HG + + G W +D SL PWL +G+ L + D S+GG + +WNGA W V+E T +
Sbjct: 159 NKWRIEARQQRPRCDVWKEWGFARDEHGQHIYMERWERVKGGTGPYLALRRRPEASGGGRDAFLIVCGDHFGYVEDR----AAAARGDWGRYASLVEVVDAAVKRGDRGAAEAYLDLKACHG-MRREGGA--WVIDYSLQPWL------VGTTLLHSSDL-------ELSSGGKE------FKWNGA----IWAVLECTFT 329
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S2X7A1_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7A1_9EUKA) HSP 1 Score: 112 bits (280), Expect = 1.740e-25 Identity = 62/145 (42.76%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR-RPSSAPD---ALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRR 423
N+WR+E+ P G+ +KE+ A D Q VYMERW+ P G+GPYLALRR +P +A D +LL+V G+HF DR L G+S KGG VD A GDR +L LE S+G V +G W + S PW + +R
Sbjct: 177 NRWRIELSPNGESFKEFSVALDEHKQAVYMERWQMYPQGKGPYLALRRMKPQNAVDHRESLLIVVGNHFAFARDRKHPLPLFSGAS---KGGCASLVDAAFRAGDREKMEQMLDLEGSYGCVCDHEGNPTWEIKMSTLPWRQGQR 318
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S3Z9A1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9A1_9EUKA) HSP 1 Score: 109 bits (272), Expect = 2.380e-24 Identity = 62/153 (40.52%), Postives = 82/153 (53.59%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR-RPSSAPD---ALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGRLPWTVDCSLHPWLENRRPFLGSVLT 447
N+WR+E+ P G+ +KE+ A D Q VYMERW P G+GPYLA+R +P +A D LL+V G+HF DR L G S KGG VD A G+R +L+LE S+GRV +G W + S PW + +R LT
Sbjct: 177 NRWRIELSPNGESFKEFSVALDEHKQAVYMERWAMYPNGKGPYLAMRLVKPENAADHRETLLIVVGNHFAFARDRKHPLPSFPGVS---KGGCASLVDAAFRAGEREKMEQMLNLEGSYGRVCDHEGNPTWEIKMSTLPWRQGQRLLKPKALT 326
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Match: A0A7S4PHR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PHR7_9EUKA) HSP 1 Score: 102 bits (253), Expect = 9.820e-22 Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 1 NKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRR----RPSSAPDALLVVCGDHFGLIVDRDPGLMEAGGSSGGGKGGLVGRVDNAIARGDRRMAIGLLSLEASHGRVSAQKGR-----------LPWTVDCSLHPWLENRRPF 429
N+WR+E+ WKEW +D+FDQH+YME W ++ G +A+ R + A+LVV G++F + DRD L AG S G L+ +D A + DR + LSL A HG++ LPW + SLHPW E ++ F
Sbjct: 187 NQWRIELNDDRSKWKEWSIVRDSFDQHLYMEMWVKMHNSNGRKIAMFREVDEKNGKKRPAILVVSGNYFNYLEDRDVDLESAGDS-----GSLIELIDKAATQKDRTTLLSYLSLTAHHGQIDPTPSPSPSSFPLSSLPLPWMIHRSLHPWKERKQLF 339 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16293.4561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16293.4561.1 >prot_Ecto-sp13_S_contig16293.4561.1 ID=prot_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp MGPGGDVWKEWGFAKDAFDQHVYMERWERLPAGRGPYLALRRRPSSAPDAback to top mRNA from alignment at Ecto-sp13_S_contig16293:1869..3947- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16293.4561.1 ID=mRNA_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16293:1869..3947- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16293:1869..3947- >mRNA_Ecto-sp13_S_contig16293.4561.1 ID=mRNA_Ecto-sp13_S_contig16293.4561.1|Name=mRNA_Ecto-sp13_S_contig16293.4561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16293:1869..3947- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |