mRNA_Ecto-sp13_S_contig16292.4560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16292.4560.1
Unique NamemRNA_Ecto-sp13_S_contig16292.4560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16292.4560.1 vs. uniprot
Match: D7FM00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM00_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.840e-31
Identity = 66/98 (67.35%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  163 MKPCQLAVDQAAGAGDIEALNLLWDESNGTLFPRAAGLQMAAAAGKICTLEWAHSRGLPGFQGLMDIAAWKGRLSVLKWLQAFRNEGCTTKATTWAAQ 456
            MKP QLAVDQAAGAGDIE                            ICTLEWAHSRGLPGFQGLMDIAAWKGRLSVLKWLQA RNEGCT K TTWAAQ
Sbjct:    1 MKPSQLAVDQAAGAGDIE----------------------------ICTLEWAHSRGLPGFQGLMDIAAWKGRLSVLKWLQANRNEGCTIKGTTWAAQ 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16292.4560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM00_ECTSI5.840e-3167.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16292contigEcto-sp13_S_contig16292:468..2253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons4
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.9620414-CDS-Ecto-sp13_S_contig16292:467..5491681462857.9620414-CDS-Ecto-sp13_S_contig16292:467..549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16292 468..549 -
1681462857.9730794-CDS-Ecto-sp13_S_contig16292:725..8051681462857.9730794-CDS-Ecto-sp13_S_contig16292:725..805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16292 726..805 -
1681462857.982976-CDS-Ecto-sp13_S_contig16292:1612..16961681462857.982976-CDS-Ecto-sp13_S_contig16292:1612..1696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16292 1613..1696 -
1681462857.9919114-CDS-Ecto-sp13_S_contig16292:2037..20911681462857.9919114-CDS-Ecto-sp13_S_contig16292:2037..2091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16292 2038..2091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.001188-UTR-Ecto-sp13_S_contig16292:2091..22531681462858.001188-UTR-Ecto-sp13_S_contig16292:2091..2253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16292 2092..2253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16292.4560.1prot_Ecto-sp13_S_contig16292.4560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16292 468..2091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16292.4560.1

>prot_Ecto-sp13_S_contig16292.4560.1 ID=prot_Ecto-sp13_S_contig16292.4560.1|Name=mRNA_Ecto-sp13_S_contig16292.4560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MKPCQLAVDQAAGAGDIEALNLLWDESNGTLFPRAAGLQMAAAAGKICTL
EWAHSRGLPGFQGLMDIAAWKGRLSVLKWLQAFRNEGCTTKATTWAAQR*
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mRNA from alignment at Ecto-sp13_S_contig16292:468..2253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16292.4560.1 ID=mRNA_Ecto-sp13_S_contig16292.4560.1|Name=mRNA_Ecto-sp13_S_contig16292.4560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16292:468..2253- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGTTACTATTGTAGCAGTTAACCTACTGACAGGTCAAGTATCTGGGGT
TTGATACAACACAGCATGATACAGCAGCAGTTCCCAGGCAGTCGGTAACT
CTACTGAGTTTGCTCGCCCTCCAGCTGTATGCATAGGACAAAAGAAAATA
GCGAAGACCGCAATGAAGCCGTGCCAGCTGGCCGTCGATCAAGCAGCAGG
TGCAGGCGATATCGAGGCAAGTGCCACCTTGCACTTGCCACTAACGAGAG
GCGGTAGAGGTATCTTTCACGGTGCTAGTCGTCCCGTCAGCAGGTATAAG
AACAGGCGAGGATGGATAAGCTACCGCGGTAACAAAAAACTGCTCTTGTG
TAGTTACGCACTACATACAGTAGTACATAGAGTACCGCTGTGCTTTATCG
ATGTGTGCACGGCACAGCGGCAGTGTAGGTAGATTAGTCTATGTGGTGTA
AAACTGAATCGTCGTCTACTCTGTATACTACTGCACCACTGACACCAGCA
ACTTGTTTGAATTTTCTGTAATGTGATGCTTTCCTACTACGTCAACAACC
ACCGCAGGCGTTGAACTTGCTATGGGACGAAAGCAACGGAACATTGTTCC
CACGGGCAGCAGGCTTGCAAATGGCTGCGGCGGCCGGCAAGGTACAGTGG
TCGGCTTCCAGGCCGACAGCTGTGCTTGTGGGCCGACTTTGATTGTTCAG
TAGTCGGTATCACGAGTCCACGCTGAACCCAAAGTCCAGTATCCAGCAGG
TGCCGTTCAACCTTCCTTGTGAAGACTTCATGTAACACAACATGTTGACC
GTTATTTCGGACGGGTACGAGCCCCTTTGTGATCATTCGTATGGCTTCTC
CAAGAAGAGGCAGCTCCTCTTCGTGAGGGTGCAGATACTGATCTTCTTCT
GCAATGTATGTGGAAAAGCGCGGTTGGTACCACTAAGGAACTACAGTATC
GAGTTTCACGAAATGCGTGCGCATGCGTTACCACTTCTCGTGCCTGTACC
TTCCATGTGGAGGAAACCCTCATTCTCTATGTACGACGACAATACGAGTC
AATGGTTGGGTTGTAGTATTGAACTCATGGCAGCGGCAGCGCAACCCATC
GAAACCCTAGGGGGTTGAGGTGCTCGATAGATTCACCTTAGAACACCGTA
GGCATGACGTAGCACACGCCGGTTCTTTATCGTAACGGTATATTCCTAAC
CGACTCTTCTTGCGTTTGTCAACTTCCCGATTCATGGCACAAGGTTCTCG
CATGCTAAACACCCATGCTTTCGGCGAAAAATATTTGTTCTGCACCAAGG
CATAGCCGGTCGATGTCGTGGGAATATCAATAGTGACATGCTTCCAGCAG
CGGAGGTCTCTGTAGGGAAAGTAAATGGACCTTTGACACTTACAACGTGG
TTTCACCGTTTTCACGCGCGACGTGTTGATGCTGCCACTTTGTGGCAGAT
TTGCACCCTTGAGTGGGCCCACTCGCGAGGGTTGCCAGGCTTTCAGGGGC
TCATGGACATCGCGGCTTGGAAGGGCAGGTACGAGGGTATTCATGTGATT
ATGTTAGTTGTTGTCGTTGTTTCTGCTGACAGCGGTTGGAGTCGCTGTCT
TTCACATGCAAACATGTTTTCTTTATCATCAACGTATACAATACCTGAAT
ATATATATGCATCATGGAAATTAGTAAGCGCGCCGCCGCTGACGATATTG
ACAGGTTGTCCGTGCTGAAGTGGCTTCAAGCGTTTAGAAACGAAGGGTGC
ACCACCAAGGCGACCACTTGGGCAGCTCAAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16292:468..2253-

>mRNA_Ecto-sp13_S_contig16292.4560.1 ID=mRNA_Ecto-sp13_S_contig16292.4560.1|Name=mRNA_Ecto-sp13_S_contig16292.4560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16292:468..2253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCGTGCCAGCTGGCCGTCGATCAAGCAGCAGGTGCAGGCGATAT
CGAGGCGTTGAACTTGCTATGGGACGAAAGCAACGGAACATTGTTCCCAC
GGGCAGCAGGCTTGCAAATGGCTGCGGCGGCCGGCAAGATTTGCACCCTT
GAGTGGGCCCACTCGCGAGGGTTGCCAGGCTTTCAGGGGCTCATGGACAT
CGCGGCTTGGAAGGGCAGGTTGTCCGTGCTGAAGTGGCTTCAAGCGTTTA
GAAACGAAGGGTGCACCACCAAGGCGACCACTTGGGCAGCTCAAAGGTGA
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