mRNA_Ecto-sp13_S_contig1629.4558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1629.4558.1
Unique NamemRNA_Ecto-sp13_S_contig1629.4558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 9.210e-91
Identity = 160/210 (76.19%), Postives = 175/210 (83.33%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRA 630
            VL TSFDALA  KQEE LKMTVLAAGA+APIEML  LW  +D EGTR+EA+GLVSK LLQ VGG GYR+HDLVL+F+K  I A+EEMV  ATALQAQYLGR+DV+KSY +PEHGAGNQ LF LDALWRS EKLSGDP LEV+SY  SLGELESCEAT DVASSY  VGFLFN Q  F+EAE L+   QAIQEKVL PEHP+VATSLNNRA
Sbjct:  261 VLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 4.450e-82
Identity = 155/213 (72.77%), Postives = 172/213 (80.75%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLL 639
            VLETSFD+LA  KQEEFLKM VLAAGA+APIEML  LW  +D EGTRD+A+GLVSK LL  VGG GYR+HDLVL+F K  I A+EE V  ATALQAQYLGRLDV++ Y +PEHGAG Q LF LDALWRS EKLSGDP LEV+SY  SLGELESCEAT  VA SY SVGFLFN Q  ++EAE L+E   AIQEKVL PEHP+VATSL+NRA LL
Sbjct:  520 VLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.220e-81
Identity = 173/316 (54.75%), Postives = 197/316 (62.34%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQFSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQAITTTPSRSMRGRRRFGRVISVVTTQ*WQLCSTTGRGC*GRR-----------------QGKYDEADPLYQRALAIDEKVLGPEHPDVARDLNNRAKLLRAQ 903
            VLETSFDAL   K++ F K  VLA GAVA  EMLL LW T+D  GTR++A+GLVSK LLQ VGG GYR+HDLVLDF+KIKI AD EM     ALQAQ+LGRL+V+KSYE+PEHGAGNQ LFVLDALWRS E+LSGDP LEV SY TSL  LESCEAT  VASSYSSVGFLF+            +QAIQE++L PEH +VA SL NRA LL  Q      +  +  R +                                            QG+Y EA+PLY RA  I E+ LGPEHP VA  LNNRA LL  Q
Sbjct:  397 VLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFS------------IQAIQEQILGPEHLDVAMSLINRAQLLRAQG-NYDDAEPLYERSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEESDDFVTLPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 2.940e-81
Identity = 152/208 (73.08%), Postives = 171/208 (82.21%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNN 624
            VLETSFD+LA  KQEEFLKM VLAAGA+APIEML  LW  +D EGTRD+A+GLVSK LL  VGG GYR+HDLVL+F K  I A+EE V  ATALQAQYLGRLDV++SY +PEHG G+Q LF LDALWRS EKLSGDPGLEV+SY  SL ELESCEAT  VA+SY SVGFLFN Q  ++EAE L+E  +AIQEKVL PEHP+VATSLNN
Sbjct:  503 VLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 6.070e-81
Identity = 150/213 (70.42%), Postives = 174/213 (81.69%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLL 639
            VLETSFD+LA  KQEEFL+M+VLAAGA+APIEML  LW  +D EGTRDEA+GLV+K LL  VG  GYR+HD+VL+F K  I ADEE V  ATALQAQ+LGRLDV+KSY +PEHGAG++ LF LD+LWRS EKLSGDP LEV++Y  SL ELESC+AT D+ASSYS+VGFLF+ Q  + EAE LHE  QA+QEKVL PEHP VA SLNNRA LL
Sbjct:  478 VLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLL 690          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.200e-73
Identity = 149/245 (60.82%), Postives = 167/245 (68.16%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAG-----------------------------AVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQ 648
            VLETSFD+LA  KQEEFLK+ VLAA                              A+APIEML  LW  +D EGTRDEA+GLVSK LL  VGG GYR+HDLVL++ K +I AD EMV   TALQA +LGRLDV+KSY +PEHGAGNQ LF LDALWRS EKLSGDP LEV+        LESCEAT  VA SY SVGFLFN Q  ++EAE L+E  QAIQE VL PEHP+V TSLNNRA LL +Q
Sbjct:  466 VLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVA--------LESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 6.080e-72
Identity = 142/211 (67.30%), Postives = 161/211 (76.30%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAG 633
            VLET+FD+LA  KQ+EFL M VLAAGA+APIEML  LW  +D EGT  EA+GLVSK LL  VGG GYR+HDLVLDF K  I A+EE V  ATALQAQYLGRLDVV+SY +PEHGAG+Q +F LDALWRS EKLSGDP LEV+SY  SLG LE  EAT   A SY SVGFLFN Q  + +AE L++   A QEKVL  EHP+VA SLN+ AG
Sbjct:  304 VLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQGKYDDAESLYKRSLATQEKVLGQEHPDVAQSLNDLAG 514          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 6.840e-63
Identity = 128/209 (61.24%), Postives = 154/209 (73.68%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNR 627
            VL  SF+ALA  K+EEFL+M VLA GAVAP EML  LW  +D+EGT++EA+GLV+K LLQ V G GYR+HDL+L +L++KI  D E V  ATALQAQYLGRLDVV SY + +HGA NQ LF L  LWR  EKLSGDP LE +SY   LGEL+SCEATA+VA+    V  L++ Q  F+EAE L+E  Q I EKVL  EH +VA +LNNR
Sbjct:  497 VLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCLEWVALLYDIQGKFAEAEPLYERSQTILEKVLGSEHSDVAKALNNR 705          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.070e-46
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1
Query:  265 MVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNR 627
            MV  AT LQA +LG LDV+K YENPEHGA NQ LFVLDALWRS EKLSGD  LEV+SY TSLGELESC+AT DVASSYS VGFLFN Q  +++AE L+E  QAIQEK L  EH +VATSLNNR
Sbjct:    1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYSFVGFLFNIQGEYTQAEPLYEKSQAIQEKFLGQEHSDVATSLNNR 123          
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.320e-44
Identity = 129/312 (41.35%), Postives = 161/312 (51.60%), Query Frame = 1
Query:    7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDG-YRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATAD-----VASSYSSVGFLFNNQFSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQAITTTPSRSMRGRRRFGRVISVVTTQ*WQLCSTTGRGC*GRRQGKYDEADPLYQRALAIDEKVLGPEHPDVARDLNNRAKLLRAQDDYAGAV 924
            VL  SF ALA  K++EFLKM VLA GAVAPI ML  LW T+D +G R+EADGL SK LLQ VGG G YR+HDLVLDF+KIK+ AD EM     A++ + LG          PEH                A  L+   GL           L  C +T       +    S        ++SEAE L++  QA++ K L PEHP++A +LNNRA LL  Q                G V  ++      L  TT   C       +   DPL+ RA+ I EK LGP+HPD+A  LNNRA+LLRAQ + A  V
Sbjct:   48 VLGASFSALAAKKRKEFLKMAVLAPGAVAPIAMLRNLWETEDNKGAREEADGLTSKSLLQDVGGGGGYRVHDLVLDFVKIKVKADVEM-----AIREKVLG----------PEHPD-------------VAASLNNRAGL-----------LRKCFSTIPFTIFTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQG---------------GVVEQLLARCQSPLALTTLLTCL-----PFTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGEGATEV 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE9.210e-9176.19NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI4.450e-8272.77NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KU94_9PHAE1.220e-8154.75NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI2.940e-8173.08NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI6.070e-8170.42NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.200e-7360.82NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI6.080e-7267.30NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI6.840e-6361.24NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JY23_9PHAE1.070e-4673.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC1_9PHAE1.320e-4441.35Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1629contigEcto-sp13_S_contig1629:7887..10135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score258.1
Seed ortholog evalue3.8e-66
Seed eggNOG ortholog2880.D7G722
Model size1261
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size666
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1629.4558.1prot_Ecto-sp13_S_contig1629.4558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1629 7950..9220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.8429065-UTR-Ecto-sp13_S_contig1629:7886..79491681462857.8429065-UTR-Ecto-sp13_S_contig1629:7886..7949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 7887..7949 +
1681462857.8999467-UTR-Ecto-sp13_S_contig1629:9220..92681681462857.8999467-UTR-Ecto-sp13_S_contig1629:9220..9268Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 9221..9268 +
1681462857.9090261-UTR-Ecto-sp13_S_contig1629:9429..95551681462857.9090261-UTR-Ecto-sp13_S_contig1629:9429..9555Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 9430..9555 +
1681462857.916637-UTR-Ecto-sp13_S_contig1629:9666..97851681462857.916637-UTR-Ecto-sp13_S_contig1629:9666..9785Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 9667..9785 +
1681462857.924426-UTR-Ecto-sp13_S_contig1629:9896..101351681462857.924426-UTR-Ecto-sp13_S_contig1629:9896..10135Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 9897..10135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.85705-CDS-Ecto-sp13_S_contig1629:7949..80151681462857.85705-CDS-Ecto-sp13_S_contig1629:7949..8015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 7950..8015 +
1681462857.8696835-CDS-Ecto-sp13_S_contig1629:8155..85541681462857.8696835-CDS-Ecto-sp13_S_contig1629:8155..8554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 8156..8554 +
1681462857.88007-CDS-Ecto-sp13_S_contig1629:8818..89381681462857.88007-CDS-Ecto-sp13_S_contig1629:8818..8938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 8819..8938 +
1681462857.8902278-CDS-Ecto-sp13_S_contig1629:9139..92201681462857.8902278-CDS-Ecto-sp13_S_contig1629:9139..9220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 9140..9220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1629.4558.1

>prot_Ecto-sp13_S_contig1629.4558.1 ID=prot_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRL
HDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQC
LFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGF
LFNNQFSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQAITTT
PSRSMRGRRRFGRVISVVTTQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig1629:7887..10135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1629.4558.1 ID=mRNA_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7887..10135+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACGGTCCTCGAGACCAGTTTCGACGCCTTGGCAAAAGTAAAGCAAGA GGAGTTTCTCAAGATGACTGTGTTGGCGGCGGGTGCTGTCGCGCCGATCG AGATGCTTCTTAAGCTGTGGGGGACAAAGGTGCGTTGCGGCGTCGTCCCA TCGTTGGTGCCTGTCACGTGGGGGGACGCGTTGTGTGGGTCGTGTGGATT GTTACGCAGGCGCTGTTGTGTCCTGTGGGCTGATGCGGATGCATACCTTC TCTGGTGCCCCATTTACAGGACATGGAGGGTACACGAGACGAGGCTGATG GCCTTGTGAGCAAGAAGCTACTGCAAGGCGTGGGTGGCGATGGGTACCGT CTGCATGACCTCGTTCTGGATTTTCTAAAGATCAAAATCGCGGCAGACGA GGAGATGGTGGGAAACGCTACAGCGCTGCAGGCGCAGTACCTCGGACGAC TAGACGTGGTGAAGAGCTACGAAAACCCGGAGCATGGTGCTGGTAACCAA TGCTTGTTCGTCTTGGATGCCCTCTGGCGCTCGGCGGAGAAGCTCTCGGG AGATCCGGGGCTGGAGGTTTCCTCGTACGGCACTAGCCTCGGAGAGTTGG AGTCGTGCGAGGCTACTGCGGATGTGGCGAGTTCCTACTCGTCCGTCGGT TTTTTGTTCAACAACCAGGTACAGCATGTTTGTTCTGTTTGTTTGGGCGT TTCCGTCTCGCAATAGCATGTGTTGCACCGACGCTGTACAATGTACGGGA TTCCGTGTGGTCACCTCTTTGTTTTCTGATACGTTAAACGAATCGGAAAA ACTTTTTGAATTGTGTGGCTTTCGATGTTGCTGACAGAGCTCCGATGAGA GGTGGGCATGGATGTTTTTTGTTTTGAGTTCTAGGTTGAACCACATCCTG ACAACAACCCACTTCATTTTGTCCGGGGCAAGTTCTCTGAGGCCGAGAAA CTCCACGAGAATGTACAAGCTATACAGGAGAAGGTCTTGGTTCCAGAGCA TCCGAATGTGGCTACATCGCTCAACAATCGGGCGGGGTTGTTGACGGAAC AGGTGAAAGCCGTCGGTATTTTTGAAGTTTCTTATGGTGACCTGAGCGTT ATGTAGTGCTCAACAACCGGGCGCTGTTGTTGAGGGCGCAGGTGAGAGCC GCTAGAAATTTCGTGGAAAAATCGTAAGGTCAACATTTATCGATAAACCT TTTCGTTCGCAGAGGATCACTCCCTCACAAGAACCCATTGCTTGCTCTTC AAGGCGATTACGACGACGCCGAGCCGCTCTATGCGCGGGCGACGGAGATT TGGGAGAGTGATCTCGGTCGTGACCACCCAATAGTGGCAACTTTGCTCAA CAACCGGGCGGGGTTGTTGAGGGCGCAGGCAGGTGAGAGCCATCAGAAAT GTTCCACGAAAGTTTTTGTGGTGACCTGTAAATGATGTCCTCAACAACGG GCGAAGTTGCTGCGCGTTTGTTTCTCTACAAGGAGGCTACCCACAAGTGC ATGACGTCACTACCATCTGTCACGCTGTCCCCTCATGTCCCAGGGCAAGT ATGACGAAGCTGACCCGTTGTACCAACGGGCCCTTGCGATAGACGAGAAA GTGCTGGGTCCGGAACACCCCGACGTGGCTAGAGATCTCAACAACCGGGC GAAGTTGTTGAGAGCACAGGTGAGAGTCGAAGGATTTTTCCAGGATGTTT CTTGTGGTTGTCTTCTCAAATTTCAACAACAGGGTTGCAAAGACTCCAGC TAATACCGTGGACCCAAAATTTATCCACAGGACGACTATGCCGGAGCTGT GCCGTGAATGAAAGGGCCACGGAGATTTGGATGAAAGCCTTAGGTCCTGA GCACCTGACAGGGGCAACACGCTCGACAACCGTGTTGTTGGAGAAGCAGG TGAGAGCCAAACGATGGTTCTAGATGTTTCCAGAAGGGAATGTTCCTCCG CAAGTCTAGATCCGACTTGTTCTTACACGTGACCCTGCCACGCTGTTGGC TGTATCCCAGGGGAAGAACGATGAAGCCGAGCCGCCATACGAGCGCGCGC TGGCTATCGACGAGAAGGTTTACGGTCCTGATCACCCGGAGGTCGCTACA TTTCTCCGCAATATCCGAAATTGTCTTTGACCACACTCCGCATTGCCTTT TCTCGCGTGGCGTTCATCTCAGCCAGACCTTCTGCTTTTTCGAGCTACTG AGATCGAAGAGAAAACTCTGGGCCCGGACCACCCCTATATTGCCACAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1629:7887..10135+

>mRNA_Ecto-sp13_S_contig1629.4558.1 ID=mRNA_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7887..10135+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGTGTTGGCGGCGGGTGCTGTCGCGCCGATCGAGATGCTTCTTAA
GCTGTGGGGGACAAAGGACATGGAGGGTACACGAGACGAGGCTGATGGCC
TTGTGAGCAAGAAGCTACTGCAAGGCGTGGGTGGCGATGGGTACCGTCTG
CATGACCTCGTTCTGGATTTTCTAAAGATCAAAATCGCGGCAGACGAGGA
GATGGTGGGAAACGCTACAGCGCTGCAGGCGCAGTACCTCGGACGACTAG
ACGTGGTGAAGAGCTACGAAAACCCGGAGCATGGTGCTGGTAACCAATGC
TTGTTCGTCTTGGATGCCCTCTGGCGCTCGGCGGAGAAGCTCTCGGGAGA
TCCGGGGCTGGAGGTTTCCTCGTACGGCACTAGCCTCGGAGAGTTGGAGT
CGTGCGAGGCTACTGCGGATGTGGCGAGTTCCTACTCGTCCGTCGGTTTT
TTGTTCAACAACCAGTTCTCTGAGGCCGAGAAACTCCACGAGAATGTACA
AGCTATACAGGAGAAGGTCTTGGTTCCAGAGCATCCGAATGTGGCTACAT
CGCTCAACAATCGGGCGGGGTTGTTGACGGAACAGGCGATTACGACGACG
CCGAGCCGCTCTATGCGCGGGCGACGGAGATTTGGGAGAGTGATCTCGGT
CGTGACCACCCAATAG
back to top