mRNA_Ecto-sp13_S_contig1629.4558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 294 bits (752), Expect = 9.210e-91 Identity = 160/210 (76.19%), Postives = 175/210 (83.33%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRA 630
VL TSFDALA KQEE LKMTVLAAGA+APIEML LW +D EGTR+EA+GLVSK LLQ VGG GYR+HDLVL+F+K I A+EEMV ATALQAQYLGR+DV+KSY +PEHGAGNQ LF LDALWRS EKLSGDP LEV+SY SLGELESCEAT DVASSY VGFLFN Q F+EAE L+ QAIQEKVL PEHP+VATSLNNRA
Sbjct: 261 VLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 284 bits (727), Expect = 4.450e-82 Identity = 155/213 (72.77%), Postives = 172/213 (80.75%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLL 639
VLETSFD+LA KQEEFLKM VLAAGA+APIEML LW +D EGTRD+A+GLVSK LL VGG GYR+HDLVL+F K I A+EE V ATALQAQYLGRLDV++ Y +PEHGAG Q LF LDALWRS EKLSGDP LEV+SY SLGELESCEAT VA SY SVGFLFN Q ++EAE L+E AIQEKVL PEHP+VATSL+NRA LL
Sbjct: 520 VLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.220e-81 Identity = 173/316 (54.75%), Postives = 197/316 (62.34%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQFSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQAITTTPSRSMRGRRRFGRVISVVTTQ*WQLCSTTGRGC*GRR-----------------QGKYDEADPLYQRALAIDEKVLGPEHPDVARDLNNRAKLLRAQ 903
VLETSFDAL K++ F K VLA GAVA EMLL LW T+D GTR++A+GLVSK LLQ VGG GYR+HDLVLDF+KIKI AD EM ALQAQ+LGRL+V+KSYE+PEHGAGNQ LFVLDALWRS E+LSGDP LEV SY TSL LESCEAT VASSYSSVGFLF+ +QAIQE++L PEH +VA SL NRA LL Q + + R + QG+Y EA+PLY RA I E+ LGPEHP VA LNNRA LL Q
Sbjct: 397 VLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFS------------IQAIQEQILGPEHLDVAMSLINRAQLLRAQG-NYDDAEPLYERSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEESDDFVTLPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 283 bits (723), Expect = 2.940e-81 Identity = 152/208 (73.08%), Postives = 171/208 (82.21%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNN 624
VLETSFD+LA KQEEFLKM VLAAGA+APIEML LW +D EGTRD+A+GLVSK LL VGG GYR+HDLVL+F K I A+EE V ATALQAQYLGRLDV++SY +PEHG G+Q LF LDALWRS EKLSGDPGLEV+SY SL ELESCEAT VA+SY SVGFLFN Q ++EAE L+E +AIQEKVL PEHP+VATSLNN
Sbjct: 503 VLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 282 bits (721), Expect = 6.070e-81 Identity = 150/213 (70.42%), Postives = 174/213 (81.69%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLL 639
VLETSFD+LA KQEEFL+M+VLAAGA+APIEML LW +D EGTRDEA+GLV+K LL VG GYR+HD+VL+F K I ADEE V ATALQAQ+LGRLDV+KSY +PEHGAG++ LF LD+LWRS EKLSGDP LEV++Y SL ELESC+AT D+ASSYS+VGFLF+ Q + EAE LHE QA+QEKVL PEHP VA SLNNRA LL
Sbjct: 478 VLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLL 690
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 253 bits (646), Expect = 1.200e-73 Identity = 149/245 (60.82%), Postives = 167/245 (68.16%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAG-----------------------------AVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQ 648
VLETSFD+LA KQEEFLK+ VLAA A+APIEML LW +D EGTRDEA+GLVSK LL VGG GYR+HDLVL++ K +I AD EMV TALQA +LGRLDV+KSY +PEHGAGNQ LF LDALWRS EKLSGDP LEV+ LESCEAT VA SY SVGFLFN Q ++EAE L+E QAIQE VL PEHP+V TSLNNRA LL +Q
Sbjct: 466 VLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVA--------LESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 256 bits (653), Expect = 6.080e-72 Identity = 142/211 (67.30%), Postives = 161/211 (76.30%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAG 633
VLET+FD+LA KQ+EFL M VLAAGA+APIEML LW +D EGT EA+GLVSK LL VGG GYR+HDLVLDF K I A+EE V ATALQAQYLGRLDVV+SY +PEHGAG+Q +F LDALWRS EKLSGDP LEV+SY SLG LE EAT A SY SVGFLFN Q + +AE L++ A QEKVL EHP+VA SLN+ AG
Sbjct: 304 VLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQGKYDDAESLYKRSLATQEKVLGQEHPDVAQSLNDLAG 514
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 229 bits (584), Expect = 6.840e-63 Identity = 128/209 (61.24%), Postives = 154/209 (73.68%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNR 627
VL SF+ALA K+EEFL+M VLA GAVAP EML LW +D+EGT++EA+GLV+K LLQ V G GYR+HDL+L +L++KI D E V ATALQAQYLGRLDVV SY + +HGA NQ LF L LWR EKLSGDP LE +SY LGEL+SCEATA+VA+ V L++ Q F+EAE L+E Q I EKVL EH +VA +LNNR
Sbjct: 497 VLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCLEWVALLYDIQGKFAEAEPLYERSQTILEKVLGSEHSDVAKALNNR 705
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.070e-46 Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 265 MVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATADVASSYSSVGFLFNNQ--FSEAEKLHENVQAIQEKVLVPEHPNVATSLNNR 627
MV AT LQA +LG LDV+K YENPEHGA NQ LFVLDALWRS EKLSGD LEV+SY TSLGELESC+AT DVASSYS VGFLFN Q +++AE L+E QAIQEK L EH +VATSLNNR
Sbjct: 1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYSFVGFLFNIQGEYTQAEPLYEKSQAIQEKFLGQEHSDVATSLNNR 123
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.320e-44 Identity = 129/312 (41.35%), Postives = 161/312 (51.60%), Query Frame = 1
Query: 7 VLETSFDALAKVKQEEFLKMTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDG-YRLHDLVLDFLKIKIAADEEMVGNATALQAQYLGRLDVVKSYENPEHGAGNQCLFVLDALWRSAEKLSGDPGLEVSSYGTSLGELESCEATAD-----VASSYSSVGFLFNNQFSEAEKLHENVQAIQEKVLVPEHPNVATSLNNRAGLLTEQAITTTPSRSMRGRRRFGRVISVVTTQ*WQLCSTTGRGC*GRRQGKYDEADPLYQRALAIDEKVLGPEHPDVARDLNNRAKLLRAQDDYAGAV 924
VL SF ALA K++EFLKM VLA GAVAPI ML LW T+D +G R+EADGL SK LLQ VGG G YR+HDLVLDF+KIK+ AD EM A++ + LG PEH A L+ GL L C +T + S ++SEAE L++ QA++ K L PEHP++A +LNNRA LL Q G V ++ L TT C + DPL+ RA+ I EK LGP+HPD+A LNNRA+LLRAQ + A V
Sbjct: 48 VLGASFSALAAKKRKEFLKMAVLAPGAVAPIAMLRNLWETEDNKGAREEADGLTSKSLLQDVGGGGGYRVHDLVLDFVKIKVKADVEM-----AIREKVLG----------PEHPD-------------VAASLNNRAGL-----------LRKCFSTIPFTIFTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQG---------------GVVEQLLARCQSPLALTTLLTCL-----PFTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGEGATEV 300 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1629.4558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1629.4558.1 >prot_Ecto-sp13_S_contig1629.4558.1 ID=prot_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp MTVLAAGAVAPIEMLLKLWGTKDMEGTRDEADGLVSKKLLQGVGGDGYRLback to top mRNA from alignment at Ecto-sp13_S_contig1629:7887..10135+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1629.4558.1 ID=mRNA_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7887..10135+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1629:7887..10135+ >mRNA_Ecto-sp13_S_contig1629.4558.1 ID=mRNA_Ecto-sp13_S_contig1629.4558.1|Name=mRNA_Ecto-sp13_S_contig1629.4558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7887..10135+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |