mRNA_Ecto-sp13_S_contig16287.4553.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16287.4553.1
Unique NamemRNA_Ecto-sp13_S_contig16287.4553.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16287.4553.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 6.300e-76
Identity = 172/207 (83.09%), Postives = 176/207 (85.02%), Query Frame = 1 
Query:    1 SSPVYLPESLSQAIYVPTQKITTLHPGVGVVAVEVATALASGQATSGDGRRDAGGDEGG--EDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGAAGSSGRYDNSSS---SYAPXXXXXXXXXXXXXXXXXXXXXXXXXXXWEVSRVGGVGGRPDDAAALVRRAKALGVPPLPPDLGAVRAPNGAKYSHYLLD 606
            SSPVYLPESLSQAIYVPTQKITTLHPGVG VAV VATALASGQA+SGD             EDDIDLRLSS+ALSATPALLQSVTGMHTNAVDARRAMALVE ADVDGAAGSSGR+DN SS   S   XXXXXXXXXXXXXXXXXXXX       WEVSRVGGVGGRPDDA AL+RRAKALGVPPLPPDLGAVRAPNGAKYSHYLLD
Sbjct:  892 SSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVATALASGQASSGDXXXXXXXXXXXXXEDDIDLRLSSSALSATPALLQSVTGMHTNAVDARRAMALVEHADVDGAAGSSGRHDNGSSYAASXXXXXXXXXXXXXXXXXXXXXXXGKPSAPAWEVSRVGGVGGRPDDAVALLRRAKALGVPPLPPDLGAVRAPNGAKYSHYLLD 1098
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BLAST of mRNA_Ecto-sp13_S_contig16287.4553.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.160e-70
Identity = 165/219 (75.34%), Postives = 167/219 (76.26%), Query Frame = 1 
Query:    1 SSPVYLPESLSQAIYVPTQKITTLHPGVGVVAVEVATALASGQATSGDGRRDAGGDEGGEDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGAAGSSGRYDNSSSSYAPXXXXXXXXXXXXXXXXXXXXXXXXXXXWEVSRVGGVGGRPDDAAALVRRAK-----------------ALGVPPLPPDLGAVRAPNGAKYSHYLLD 606
            SSPVYLPESLSQAIYVPTQKITTLHPGVG VAV VA ALASGQATSGDGRRDAGGDEGGEDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGAAGSSGR+DN       XXXXXXXXXXXXXXXX              S   GVG +P   A  V RA                  ALGVPPLPPDLGAVRAPNGAKYSHYLLD
Sbjct:  625 SSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVAKALASGQATSGDGRRDAGGDEGGEDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGAAGSSGRHDNXXXXXXXXXXXXXXXXXXXXXXX-------------ASSRQGVGVKPSAPAGSVSRAXXXXXXXXXXXXXXXXXXALGVPPLPPDLGAVRAPNGAKYSHYLLD 830
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16287.4553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSX2_9PHAE6.300e-7683.09Non-specific serine/threonine protein kinase n=1 T... [more]
D8LRQ5_ECTSI1.160e-7075.34Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16287contigEcto-sp13_S_contig16287:326..1731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score243.8
Seed ortholog evalue6.8e-62
Seed eggNOG ortholog2880.D8LRQ5
Model size610
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons3
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
Cds size606
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.4721231-CDS-Ecto-sp13_S_contig16287:327..3671681462857.4721231-CDS-Ecto-sp13_S_contig16287:327..367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 328..367 -
1681462857.484072-CDS-Ecto-sp13_S_contig16287:852..11681681462857.484072-CDS-Ecto-sp13_S_contig16287:852..1168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 853..1168 -
1681462857.494164-CDS-Ecto-sp13_S_contig16287:1481..17311681462857.494164-CDS-Ecto-sp13_S_contig16287:1481..1731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 1482..1731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16287.4553.1prot_Ecto-sp13_S_contig16287.4553.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16287 328..1731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16287.4553.1

>prot_Ecto-sp13_S_contig16287.4553.1 ID=prot_Ecto-sp13_S_contig16287.4553.1|Name=mRNA_Ecto-sp13_S_contig16287.4553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
SSPVYLPESLSQAIYVPTQKITTLHPGVGVVAVEVATALASGQATSGDGR
RDAGGDEGGEDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVE
QADVDGAAGSSGRYDNSSSSYAPSATLASAAAAAVASSRQGRGGKPSAPA
WEVSRVGGVGGRPDDAAALVRRAKALGVPPLPPDLGAVRAPNGAKYSHYL
LD
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mRNA from alignment at Ecto-sp13_S_contig16287:326..1731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16287.4553.1 ID=mRNA_Ecto-sp13_S_contig16287.4553.1|Name=mRNA_Ecto-sp13_S_contig16287.4553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16287:326..1731- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCTCCCGTCTACCTCCCGGAGTCTCTGTCGCAGGCCATCTACGTGCC
GACGCAGAAGATAACCACTCTGCACCCCGGGGTAGGCGTGGTGGCCGTTG
AGGTGGCGACGGCGCTTGCAAGCGGGCAAGCGACCTCGGGGGACGGCCGT
CGCGACGCGGGGGGGGATGAGGGCGGGGAGGACGACATCGACCTGCGGCT
GTCCTCTGCCGCGTTGTCGGCGACCCCTGCGCTTCTCCAGAGCGTCACCG
GTACGGGATCGTTTTTCTCGAGAGGACGAGGACGAACGTTCCGTCGTTGG
ACGTCTTCAGCCATGCGTTTTACCCTGTCTGCCGGTCTCTCACATACCCC
CCACCCCCCCCCGTAGCCGTCGCCCTTTTGAATGGGCTTGAATGCCATTT
GATGAGATAGGTGTTGGATATGGTTTTCAAGTCTATCTTCAACACCGTTT
GATAAGTTAGGTTTTGGATAGGTTGTGGATATCGTGTTTAAAGCTACGTA
CCTTTCTTCGCTCACGGGAAAATACTTTTGTGCCTACCTCGCTGCCATTC
CGACCCCCGCCAGGAATGCACACGAACGCGGTCGACGCGCGAAGGGCCAT
GGCCCTGGTGGAGCAGGCAGATGTGGATGGAGCAGCAGGAAGTAGTGGAC
GATACGACAACAGCAGCAGCAGCTACGCTCCTAGCGCAACGTTGGCGTCC
GCTGCCGCCGCCGCCGTTGCGTCGAGCCGACAAGGGCGTGGTGGGAAACC
GTCCGCTCCCGCGTGGGAGGTGTCTAGGGTGGGCGGGGTTGGTGGCAGGC
CCGACGATGCGGCTGCCCTCGTGAGGAGGGCGAAGGCGCTCGGAGTGCCG
CCGCTACCCCCAGACCTTGGGGCAGTCAGGTAAGGTGCAAGGGCACGCGA
TGCAAGGGCACCGTGGCGGGATCTAATTGTGGCTGCCTTGTTTTATCGGG
GTGTGCCAGATGCTGTGGTGCTTGGATCGGTGGTCGAGAGTAGACACGCC
GCCGCAGCTTCCGGTGAAGTCCGTCCGACGAATGGACAGTGCTCTTTGTC
AGCTGCACCGCCGATCATTTTTCGCGATTTTCACGGCGTGCTGTTGCCCC
TGGCTTCAAAATTAAGGAAGGCGCGGGGCTCCAGTGGATGGAGGAGAGAG
GTTCCGACTCCTTGTGCAGCGCTCTCCTACAGGGTTAAGCACGATTTTTT
TTTTTTTTGTTTTTTCTCCACTAAGCTATCTATTCCACCGGGCACGAGGT
CTGCTTTCCCTCAATCCCTCGATGTACATGAGTTAATTGATTGCTCTTGC
CTCTGCTTTCGTTGCCTCACGTATGTACTCACACGTGCCTCCACCGCGGT
GGTAATGACATCAGGGCTCCGAACGGTGCCAAATACTCCCACTACCTCCT
TGACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16287:326..1731-

>mRNA_Ecto-sp13_S_contig16287.4553.1 ID=mRNA_Ecto-sp13_S_contig16287.4553.1|Name=mRNA_Ecto-sp13_S_contig16287.4553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16287:326..1731- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCTCCCGTCTACCTCCCGGAGTCTCTGTCGCAGGCCATCTACGTGCC
GACGCAGAAGATAACCACTCTGCACCCCGGGGTAGGCGTGGTGGCCGTTG
AGGTGGCGACGGCGCTTGCAAGCGGGCAAGCGACCTCGGGGGACGGCCGT
CGCGACGCGGGGGGGGATGAGGGCGGGGAGGACGACATCGACCTGCGGCT
GTCCTCTGCCGCGTTGTCGGCGACCCCTGCGCTTCTCCAGAGCGTCACCG
GAATGCACACGAACGCGGTCGACGCGCGAAGGGCCATGGCCCTGGTGGAG
CAGGCAGATGTGGATGGAGCAGCAGGAAGTAGTGGACGATACGACAACAG
CAGCAGCAGCTACGCTCCTAGCGCAACGTTGGCGTCCGCTGCCGCCGCCG
CCGTTGCGTCGAGCCGACAAGGGCGTGGTGGGAAACCGTCCGCTCCCGCG
TGGGAGGTGTCTAGGGTGGGCGGGGTTGGTGGCAGGCCCGACGATGCGGC
TGCCCTCGTGAGGAGGGCGAAGGCGCTCGGAGTGCCGCCGCTACCCCCAG
ACCTTGGGGCAGTCAGGGCTCCGAACGGTGCCAAATACTCCCACTACCTC
CTTGAC
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