mRNA_Ecto-sp13_S_contig16270.4544.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5JT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT71_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.530e-38 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 238 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRC---NDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
L ALWDHTQ V + EG++S GGA+P +LRRLLDVLD + L NPWTEPPESIV+KG IRGYFED YAEPCRI+R+SVK+++VGQEGAGKT
Sbjct: 67 LAALWDHTQQVQDVDHNEGSDSMPGGAMPSQLRRLLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEPCRIKRSSVKVVLVGQEGAGKT 168
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 142 bits (357), Expect = 7.810e-36 Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 244 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCN---DLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
ALW+HT + +EE ++S GG+ PR+L RLLDVLDR DL+LD NPW EPPESIV KGA IRGYFED YAEPCR+QR+SVKII+VGQEGAGKT
Sbjct: 251 ALWNHTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEPCRVQRSSVKIILVGQEGAGKT 350
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 140 bits (352), Expect = 3.670e-35 Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 238 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
L ALWDHT + +EEGA+ SGG IP +L RLLDVLDR L L+ NPW EPPESIV KG IRGYFED YAEPCR++R+SVK+I+VGQEGAGKT
Sbjct: 179 LTALWDHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEPCRVERSSVKVILVGQEGAGKT 279
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.680e-34 Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 214 ELRLYNNHLKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLD-----RCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
+L L +N L ALWDHTQ+A + ++EG SGG +P +L RLLDVLD + L L NPW EPPE IV+KG +RGYFED YAEPCRI+R+ VK+++VGQEGAGKT
Sbjct: 96 KLDLAHNKLSALWDHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEPCRIKRSIVKVVLVGQEGAGKT 207
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 134 bits (338), Expect = 2.760e-33 Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 232 NHLKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
N L ALWDHTQ+A V EEG N GG +P +L RLLDVLDR L LD NPW EPP SIV KG T IRGYFED Y E R+QRNSVKII+VGQEGAGKT
Sbjct: 151 NELTALWDHTQNAQHV--EEGGNRTLGGQLPSQLCRLLDVLDRATGGILGLDDNPWAEPPASIVSKGPTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKT 251
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 132 bits (331), Expect = 2.440e-32 Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 244 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
ALWDHTQD + +E +S SGG +P +L RLLDVLD + L NPWTEPPES+V KG IRGYFED YAEPCRI R+SVK+++VGQEGAGKT
Sbjct: 323 ALWDHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEPCRITRSSVKVVLVGQEGAGKT 421
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 130 bits (327), Expect = 8.530e-32 Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 247 LWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
LWDHT +A V E A SGG IP LRRLL+ LD D DL NPW EPPESIV KG IRGYFED YAEPCR+QR SVK+++VGQEGAGKT
Sbjct: 516 LWDHTCNAEDVGQER-AKRMSGGTIPSELRRLLETLDGA-DTDLGGNPWAEPPESIVTKGMESIRGYFEDLYAEPCRVQRRSVKVVLVGQEGAGKT 609
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 128 bits (322), Expect = 3.850e-31 Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 244 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLD--ANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
ALWDHTQ+ V ++EG + GGA+P +L RLL VLDR + ++L NPW EPPESIV KG IRGYFED YAEPC I+R+SVK+++VGQEGAGKT
Sbjct: 40 ALWDHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEPCWIKRSSVKVVLVGQEGAGKT 138
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 124 bits (312), Expect = 8.540e-30 Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 238 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
+ ALWDHTQ+ ++G SGG++P +L RLLDVL+R + LD NPW EPPESIV KG +R YFED YAEPCRI+R S K+++VGQEGAGK+
Sbjct: 60 ISALWDHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVLERAK-IVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEPCRIERISTKVVLVGQEGAGKS 157
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 122 bits (307), Expect = 3.740e-29 Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 238 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCN---DLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 534
L ALWDHTQ+ V N +G +S SGG +P +L RLLD+L+ L L++NPW EPPESIV KG +RGYFED +A+ CRI+R VK+++VGQEGAGKT
Sbjct: 87 LTALWDHTQNVQDV-NHDGGDSMSGGPMPSQLCRLLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFADHCRIKRRGVKVVLVGQEGAGKT 187 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16270.4544.1 >prot_Ecto-sp13_S_contig16270.4544.1 ID=prot_Ecto-sp13_S_contig16270.4544.1|Name=mRNA_Ecto-sp13_S_contig16270.4544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp LWLEQNGLTGPIPVELGRLTVLEYLDLGRNELTGEIPASLGQLVKLGTLDback to top mRNA from alignment at Ecto-sp13_S_contig16270:379..3530+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16270.4544.1 ID=mRNA_Ecto-sp13_S_contig16270.4544.1|Name=mRNA_Ecto-sp13_S_contig16270.4544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16270:379..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16270:379..3530+ >mRNA_Ecto-sp13_S_contig16270.4544.1 ID=mRNA_Ecto-sp13_S_contig16270.4544.1|Name=mRNA_Ecto-sp13_S_contig16270.4544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16270:379..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |