prot_Ecto-sp13_S_contig16270.4544.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig16270.4544.1
Unique Name	prot_Ecto-sp13_S_contig16270.4544.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	178

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5JT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT71_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.530e-38
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0

Query:   80 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRC---NDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            L ALWDHTQ    V + EG++S  GGA+P +LRRLLDVLD     +   L  NPWTEPPESIV+KG   IRGYFED YAEPCRI+R+SVK+++VGQEGAGKT
Sbjct:   67 LAALWDHTQQVQDVDHNEGSDSMPGGAMPSQLRRLLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEPCRIKRSSVKVVLVGQEGAGKT 168

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 7.810e-36
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 0

Query:   82 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCN---DLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            ALW+HT +     +EE ++S  GG+ PR+L RLLDVLDR     DL+LD NPW EPPESIV KGA  IRGYFED YAEPCR+QR+SVKII+VGQEGAGKT
Sbjct:  251 ALWNHTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEPCRVQRSSVKIILVGQEGAGKT 350

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 3.670e-35
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0

Query:   80 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            L ALWDHT     + +EEGA+  SGG IP +L RLLDVLDR     L L+ NPW EPPESIV KG   IRGYFED YAEPCR++R+SVK+I+VGQEGAGKT
Sbjct:  179 LTALWDHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEPCRVERSSVKVILVGQEGAGKT 279

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.680e-34
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 0

Query:   72 ELRLYNNHLKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLD-----RCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            +L L +N L ALWDHTQ+A  + ++EG    SGG +P +L RLLDVLD     +   L L  NPW EPPE IV+KG   +RGYFED YAEPCRI+R+ VK+++VGQEGAGKT
Sbjct:   96 KLDLAHNKLSALWDHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEPCRIKRSIVKVVLVGQEGAGKT 207

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.760e-33
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 0

Query:   78 NHLKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            N L ALWDHTQ+A  V  EEG N   GG +P +L RLLDVLDR     L LD NPW EPP SIV KG T IRGYFED Y E  R+QRNSVKII+VGQEGAGKT
Sbjct:  151 NELTALWDHTQNAQHV--EEGGNRTLGGQLPSQLCRLLDVLDRATGGILGLDDNPWAEPPASIVSKGPTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKT 251

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.440e-32
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 0

Query:   82 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCND--LDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            ALWDHTQD   +  +E  +S SGG +P +L RLLDVLD      + L  NPWTEPPES+V KG   IRGYFED YAEPCRI R+SVK+++VGQEGAGKT
Sbjct:  323 ALWDHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEPCRITRSSVKVVLVGQEGAGKT 421

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.530e-32
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 0

Query:   83 LWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            LWDHT +A  V  E  A   SGG IP  LRRLL+ LD   D DL  NPW EPPESIV KG   IRGYFED YAEPCR+QR SVK+++VGQEGAGKT
Sbjct:  516 LWDHTCNAEDVGQER-AKRMSGGTIPSELRRLLETLDGA-DTDLGGNPWAEPPESIVTKGMESIRGYFEDLYAEPCRVQRRSVKVVLVGQEGAGKT 609

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.850e-31
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 0

Query:   82 ALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLD--ANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            ALWDHTQ+   V ++EG +   GGA+P +L RLL VLDR + ++L    NPW EPPESIV KG   IRGYFED YAEPC I+R+SVK+++VGQEGAGKT
Sbjct:   40 ALWDHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEPCWIKRSSVKVVLVGQEGAGKT 138

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 8.540e-30
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 0

Query:   80 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCNDLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            + ALWDHTQ+      ++G    SGG++P +L RLLDVL+R   + LD NPW EPPESIV KG   +R YFED YAEPCRI+R S K+++VGQEGAGK+
Sbjct:   60 ISALWDHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVLERAK-IVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEPCRIERISTKVVLVGQEGAGKS 157

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BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.740e-29
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 0

Query:   80 LKALWDHTQDAHGVANEEGANSKSGGAIPRRLRRLLDVLDRCN---DLDLDANPWTEPPESIVIKGATGIRGYFEDRYAEPCRIQRNSVKIIIVGQEGAGKT 178
            L ALWDHTQ+   V N +G +S SGG +P +L RLLD+L+       L L++NPW EPPESIV KG   +RGYFED +A+ CRI+R  VK+++VGQEGAGKT
Sbjct:   87 LTALWDHTQNVQDV-NHDGGDSMSGGPMPSQLCRLLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFADHCRIKRRGVKVVLVGQEGAGKT 187

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16270.4544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
A0A6H5JT71_9PHAE	2.530e-38	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FUD0_ECTSI	7.810e-36	67.00	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FUC3_ECTSI	3.670e-35	65.35	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5KSZ8_9PHAE	1.680e-34	57.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FUC9_ECTSI	2.760e-33	66.99	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LF46_ECTSI	2.440e-32	62.63	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LCS7_ECTSI	8.530e-32	65.63	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FZA1_ECTSI	3.850e-31	61.62	LRR-GTPase of the ROCO family, incomplete sequence...	[more]
D7G431_ECTSI	8.540e-30	57.58	LRR-GTPase of the ROCO family, incomplete sequence...	[more]
A0A6H5L650_9PHAE	3.740e-29	56.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 67..89 e-value: 4.5 score: 16.1 coord: 19..43 e-value: 18.0 score: 11.1
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..143 e-value: 2.3E-26 score: 94.3
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 22..42 e-value: 0.11 score: 13.1
None	No IPR available	PANTHER	PTHR27006	FAMILY NOT NAMED	coord: 47..130
None	No IPR available	PANTHER	PTHR27006:SF119	LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN	coord: 2..95
None	No IPR available	PANTHER	PTHR27006:SF119	LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN	coord: 47..130
None	No IPR available	PANTHER	PTHR27006	FAMILY NOT NAMED	coord: 2..95
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 1..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16270	contig	Ecto-sp13_S_contig16270:379..3528 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16270.4544.1	mRNA_Ecto-sp13_S_contig16270.4544.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig16270 379..3530 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig16270.4544.1 ID=prot_Ecto-sp13_S_contig16270.4544.1|Name=mRNA_Ecto-sp13_S_contig16270.4544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
LWLEQNGLTGPIPVELGRLTVLEYLDLGRNELTGEIPASLGQLVKLGTLD
LGGSKLSGPIPLELGDLTKLKELRLYNNHLKALWDHTQDAHGVANEEGAN
SKSGGAIPRRLRRLLDVLDRCNDLDLDANPWTEPPESIVIKGATGIRGYF
EDRYAEPCRIQRNSVKIIIVGQEGAGKT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt