mRNA_Ecto-sp13_S_contig1627.4543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1627.4543.1
Unique NamemRNA_Ecto-sp13_S_contig1627.4543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1627.4543.1 vs. uniprot
Match: A0A6H5L838_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L838_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.710e-53
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 MVWGSLPPRVTRVAMQAGLRCARTGLRRSGGRYAKRGGFLSTAAKVPLPDITFGVESEPALSLLGDLPLLQISQSLACPEPEGDDDGDGR 270
            MVWGSLPPRVTRVAMQAGLRCARTG RRSGGRYAKRGGFLSTAAKVPLPDITF VESEPAL LLGDLPLL ISQSLACPEPEGDDDGDGR
Sbjct:    1 MVWGSLPPRVTRVAMQAGLRCARTGSRRSGGRYAKRGGFLSTAAKVPLPDITFDVESEPALPLLGDLPLLLISQSLACPEPEGDDDGDGR 90
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BLAST of mRNA_Ecto-sp13_S_contig1627.4543.1 vs. uniprot
Match: D7FMH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.320e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:   43 MQAGLRCARTGLRRSGGRYAKRGGFLSTAAK 135
            MQAGLRCARTG RRSGGRYAKRGGFLSTAAK
Sbjct:    1 MQAGLRCARTGSRRSGGRYAKRGGFLSTAAK 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1627.4543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L838_9PHAE2.710e-5395.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH9_ECTSI4.320e-1096.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1627contigEcto-sp13_S_contig1627:13405..15771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000370.1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.8553717-CDS-Ecto-sp13_S_contig1627:13404..134841681462856.8553717-CDS-Ecto-sp13_S_contig1627:13404..13484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1627 13405..13484 +
1681462856.8713093-CDS-Ecto-sp13_S_contig1627:14615..146701681462856.8713093-CDS-Ecto-sp13_S_contig1627:14615..14670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1627 14616..14670 +
1681462856.8823912-CDS-Ecto-sp13_S_contig1627:15103..151971681462856.8823912-CDS-Ecto-sp13_S_contig1627:15103..15197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1627 15104..15197 +
1681462856.8929942-CDS-Ecto-sp13_S_contig1627:15727..157711681462856.8929942-CDS-Ecto-sp13_S_contig1627:15727..15771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1627 15728..15771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1627.4543.1prot_Ecto-sp13_S_contig1627.4543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1627 13405..15771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1627.4543.1

>prot_Ecto-sp13_S_contig1627.4543.1 ID=prot_Ecto-sp13_S_contig1627.4543.1|Name=mRNA_Ecto-sp13_S_contig1627.4543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MVWGSLPPRVTRVAMQAGLRCARTGLRRSGGRYAKRGGFLSTAAKVPLPD
ITFGVESEPALSLLGDLPLLQISQSLACPEPEGDDDGDGR*
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mRNA from alignment at Ecto-sp13_S_contig1627:13405..15771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1627.4543.1 ID=mRNA_Ecto-sp13_S_contig1627.4543.1|Name=mRNA_Ecto-sp13_S_contig1627.4543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1627:13405..15771+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATGGGGATCACTGCCTCCCCGGGTAACGCGGGTGGCTATGCAGGC
AGGTCTTCGCTGCGCGCGAACAGGCTTACGGTGAGAGCAAACCACAACGT
CCCTTTTAGTACATCGTACCTGACATGACTTTCAGACTACGATAGTTAGC
AGTCCATGTACGGTCGTGCCGCAGGCTGGGGTGCTGGGTGTATCTCTGAG
TCGTCATTCGATGGGTGTTGTAGCCCTCTCGCCTCCCTCGCTGGGTGGGG
TGTGTGAATCTGTTGTTGCTCTGAGTTTGTGCCCGACCTCTTCCACTGCG
CGGAGCTTGTACGTGTTGGTACAACACACCCAATGGCAACGTCCTCATTG
GGACCTATACTTGTGGCTCGAAGAAACCGCATGCCTGCGTACACTAGACT
CCAGACTACTGCTGTTCACCAGCCTCACGGTACACAAAAGACGGGAAGCT
TGCTGCAATACACTAATGTACCAGACACACAGCAGTTGCGTTGATCGGTT
TTGTTCTTTCCGGTGCGTACGACGCATGAGTCAACGCGTTGTCATGCATG
GATGTACCTGTACTGCTTCACGTATTACGGGCGGTTTCGGGCGCCGGGAA
CATGAACACCTCCACCTCTGACTGTGACATCGGTCACGCCCTCGCGAGAG
AGAGCGGTCAGTCTCACTGCAACGTCTACGGTGGTATCTGTGTAACCACG
CCTCCGCGATGCAATACTGCCGTACATGTGCATAACACTACGAGATCCCC
GGACCAAAAGTTGCCACGGAAGCAAGGCTCTACGGGAAAAGGCCCGACGG
AACCAGCTGAACGGCATTCTTTGTTGAGACACGAGTGCCCCAAGTTGGGT
TTGTTGTCGCTCGCATGCGGTATCCGGCGGTGCATGAGTCGTTTTCGTGG
CAAGGGGACGTGAGTATCCGGCCCGAAAGACGGGTGCAAGTGTTGGTGAC
CTGTTAAATCAGCCACAGAACGAATCTCAGCGCTACGCTCATGGTTGAAA
ATTCTGTTGCTGTGATGTTCCATTTGACTGCTGTGTACACGTACAATCTC
AAGATCATAAATCTCAAGTGATACTTGCATCGGATCTTCAACCACGTAGG
AAATTTTTGTAAAGAGGAGGGATCTCGCCCGCTCGTCATTCCTGAACTTG
ACGCGTGACGTAATGTTTCACCAGTAATGTGGCGACGTGTCCCCGTGCTT
ATGCCCAACAGGAGGAGTGGTGGGCGATACGCCAAACGCGGAGGCTTTCT
ATCCACCGCAGCCAAGGTAAACGCGCCTCACCACGCAGCAGAGCGATACG
ATCACTTCTTCACCGTGGGGTAAATCGCCGTGTACGGTATCCAAAGACTC
TCCTTGTCTCTTGTCAACCTTTTCTCCGTCGGTATTCCAGTGGTTTGTGT
AGTCTGAACGTTGCACCGTCACGCACCAGAAGAACGATATCGAGCTCTCG
CGCCTCCGACCCTTATGTGTTATCTGACTTGTAGCATAATGGATATGCTG
TACACCTTCAAGTTCAGCATCAACCCGGCACAAGAGTGTTCATGGTTCAG
ATGGGCGGTCGACTGATTGCTGTCGCTATTCTCTGGCCTTGGCGCTGTGG
AGTTTGGCAGCCGCTGGTACAGATGATAAATGCAGCTGTTCCTGACAAGC
CCCCTGCGCGCTCGTCCTCCCTCGTGTTCACCACTGCTGCAACGGCCAGG
TGCCATTGCCGGATATCACTTTTGGTGTAGAATCGGAGCCAGCGTTGTCC
TTGTTGGGAGATCTTCCACTTTTGCAGATTTCTCAGTCTCTAGGTGAGCG
GTGGAGTTGAAACGGCCCTTGTGTGCTGAGCTAGGGTTGCGTCGGACATC
TGTGTCAACGCTGATTGGAAAGCACCCCACTCGCTACCACTTACTCCGTT
GTCCATTGCAGCTGAACGCTGAAAGGAGGTGATTTTTCATGCAAAAAAAA
TGTTAGCGGCTTTGGTTGTGTTCGGTTGTCCTGGTGTGGTTCACATCCCA
TGTTCCAAGGCGAAGACACCCACGTTCCCTAAACGCTGCCAAGCTTTCGC
GGGAATGTCTCGTTGCGCCTTCTGCATGTACAGGGGGAAAATATCACTAC
TGTCTATCACTGCTGTCTCAGCTTGTGCTCTTTGGCAGTCGAGACAGGAG
GCCTTGCGTCTCCGGGATGTCGTCACTGTTTCGTCTCTAAACACCCCGGT
CTCAAGATATTTATATTGCGATACTGCTGTTTTGTCTCCATATTTTTCAG
CATTGCAATGCTGCTGTATAGTCTTTTTTTTTCAGCATTGCACTACTGCT
GTATCGTCTCCTTTTCGCTGCAGCATGTCCAGAACCGGAGGGAGACGATG
ACGGTGACGGCCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1627:13405..15771+

>mRNA_Ecto-sp13_S_contig1627.4543.1 ID=mRNA_Ecto-sp13_S_contig1627.4543.1|Name=mRNA_Ecto-sp13_S_contig1627.4543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1627:13405..15771+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATGGGGATCACTGCCTCCCCGGGTAACGCGGGTGGCTATGCAGGC
AGGTCTTCGCTGCGCGCGAACAGGCTTACGGAGGAGTGGTGGGCGATACG
CCAAACGCGGAGGCTTTCTATCCACCGCAGCCAAGGTGCCATTGCCGGAT
ATCACTTTTGGTGTAGAATCGGAGCCAGCGTTGTCCTTGTTGGGAGATCT
TCCACTTTTGCAGATTTCTCAGTCTCTAGCATGTCCAGAACCGGAGGGAG
ACGATGACGGTGACGGCCGCTGA
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