mRNA_Ecto-sp13_S_contig16230.4520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16230.4520.1
Unique NamemRNA_Ecto-sp13_S_contig16230.4520.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16230.4520.1 vs. uniprot
Match: D8LBB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB7_ECTSI)

HSP 1 Score: 635 bits (1638), Expect = 5.970e-221
Identity = 365/425 (85.88%), Postives = 379/425 (89.18%), Query Frame = 1 
Query:    1 RAGSASETPTARKTAPPPLQRVEARRGEDAPAALWRSKVRGRQMVFSLLESARIEEEDMEEALLAWPPSTSEGGGRGGREAAFHSLDEIRRRNARELDALMAEYDPRPSRNLPQHALDRRLRMALPWPEITQEVVAGGNRDAASCRHAVRDQRETFGQGGRXXXXXXXXXXXXX---EHA--DIDNECNGAECAGGDRKQYHREGEGERAWSLSRSDGAGGRAAVDGGAVSG-------EIGGSDQVDDDARGGEARGKAVAGXXXXXXXXXXXXXGTEEFHPEPSPCRTSASPTCGADASDDDTEDTAVAISASPTKRAATEDGRPARGGVEGGDQTKRLETGQRKKPTLPDPNHVNGSVMADPFNMDHIKDLPGLVGGDNRGLSRIVSDTVSYIDPAFPNLEFHRRAAMDRAGYFMPGYKPQV 1239
            RAGSASETPT RKTAPPPLQRVEARRGED PAALWRSKVRGRQMVFSLLE+ARIEEEDMEEALLA P STSEGGGRGGREAAFHSLDEIRRRNARELDALMAEYDPRPS NLPQH LDRRLR +LPWPEIT EVVAGGNRDAASCRHAV DQR+T GQGG+XXXXXXXXXXXXX   EHA  DIDN CNG ECAGGDR+Q H EG GE AWSLSRS GAGGRAAVDG A+ G       EIG SDQ DDDARGGEARG+AVAG XXXXXXXXX   GTE+ HPE SPCRTS SP+CGADA+D+D EDT VAISASPTK AATEDG PARGGVEGGD+TKRLETGQRKKPTLPDPN VNGSVMADPFNMDHIKDLPGL+GGD RGLSR+VSDTVSYIDPAFPNLEFHRRAAMDRAGYFMPGYKPQV
Sbjct:  260 RAGSASETPTGRKTAPPPLQRVEARRGEDVPAALWRSKVRGRQMVFSLLEAARIEEEDMEEALLACPASTSEGGGRGGREAAFHSLDEIRRRNARELDALMAEYDPRPSTNLPQHTLDRRLRKSLPWPEITDEVVAGGNRDAASCRHAVLDQRKTVGQGGQXXXXXXXXXXXXXXXXEHAGADIDNGCNGTECAGGDREQCHGEGGGEGAWSLSRSGGAGGRAAVDGKAIGGDKGEGGGEIGRSDQGDDDARGGEARGEAVAGAXXXXXXXXXAGRGTEKLHPESSPCRTSVSPSCGADAADNDAEDTTVAISASPTKGAATEDGGPARGGVEGGDETKRLETGQRKKPTLPDPNQVNGSVMADPFNMDHIKDLPGLLGGDKRGLSRLVSDTVSYIDPAFPNLEFHRRAAMDRAGYFMPGYKPQV 684
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BLAST of mRNA_Ecto-sp13_S_contig16230.4520.1 vs. uniprot
Match: A0A6H5L365_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L365_9PHAE)

HSP 1 Score: 504 bits (1297), Expect = 2.280e-170
Identity = 308/419 (73.51%), Postives = 317/419 (75.66%), Query Frame = 1 
Query:    1 RAGSASETPTARKTAPPPLQRVEARRGEDAPAALWRSKVRGRQMVFSLLESARIEEEDMEEALLAWPPSTSEGGGRGGREAAFHSLDEIRRRNARELDALMAEYDPRPSRNLPQHALDRRLRMALPWPEITQEVVAGGNRDAASCRHAVRDQRETFGQGGRXXXXXXXXXXXXXEHADIDNECNGAECAGGDRKQYHREGEGERAWSLSRSDGAGGRAAVDGGAVSG-------EIGGSDQVDDDARGGEARGKAVAGXXXXXXXXXXXXXGTEEFHPEPSPCRTSASPTCGADASDDDTEDTAVAISASPTKRAATEDGRPARGGVEGGDQTKRLETGQRKKPTLPDPNHVNGSVMADPFNMDHIKDLPGLVGGDNRGLSRIVSDTVSYIDPAFPNLEFHRRAAMDRAGYFMPGYKPQ 1236
            RAGSASETPTARKTAPPPLQRVE RRGED PAALWRSKVR RQMVFSLLE+ARIEEE+M                                     LDALMAEYDPRPSRNLPQ  LDRRLRMAL WPEIT EVVAGGNRDAASCRHAV DQR+T  QGGR  XXXXXXX      ADIDN CNGAECAGG+R QYH EGEGE+AWSLSRS  AGGRAAVD GA  G       EIGGSDQVDDDARGGEARG+AVAGXXXXXXXXX    GTEEFHPEPSPCRTSASPTCGADASDDD EDTAVAISASPTKRAATEDG PARGGVEGGDQTKRLETGQRK                         DLPGLVGGD RGLSR+VSDTVSYI+PAFPNLEF+RRAAMDRAGYFMPGYKPQ
Sbjct:  258 RAGSASETPTARKTAPPPLQRVETRRGEDVPAALWRSKVRRRQMVFSLLEAARIEEENM-------------------------------------LDALMAEYDPRPSRNLPQPTLDRRLRMALSWPEITDEVVAGGNRDAASCRHAVLDQRKTVDQGGRGGXXXXXXXHAD---ADIDNGCNGAECAGGNRNQYHGEGEGEKAWSLSRSGRAGGRAAVDCGATGGDEGEGGGEIGGSDQVDDDARGGEARGEAVAGXXXXXXXXXVAGRGTEEFHPEPSPCRTSASPTCGADASDDDIEDTAVAISASPTKRAATEDGGPARGGVEGGDQTKRLETGQRK-------------------------DLPGLVGGDKRGLSRLVSDTVSYINPAFPNLEFYRRAAMDRAGYFMPGYKPQ 611
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16230.4520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB7_ECTSI5.970e-22185.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L365_9PHAE2.280e-17073.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16230contigEcto-sp13_S_contig16230:195..3955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1239
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004510.1
Cds size1239
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.0446105-CDS-Ecto-sp13_S_contig16230:194..3711681462855.0446105-CDS-Ecto-sp13_S_contig16230:194..371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16230 195..371 +
1681462855.061526-CDS-Ecto-sp13_S_contig16230:1695..18061681462855.061526-CDS-Ecto-sp13_S_contig16230:1695..1806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16230 1696..1806 +
1681462855.0785136-CDS-Ecto-sp13_S_contig16230:2232..29491681462855.0785136-CDS-Ecto-sp13_S_contig16230:2232..2949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16230 2233..2949 +
1681462855.0890229-CDS-Ecto-sp13_S_contig16230:3337..34121681462855.0890229-CDS-Ecto-sp13_S_contig16230:3337..3412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16230 3338..3412 +
1681462855.0985234-CDS-Ecto-sp13_S_contig16230:3796..39551681462855.0985234-CDS-Ecto-sp13_S_contig16230:3796..3955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16230 3797..3955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16230.4520.1prot_Ecto-sp13_S_contig16230.4520.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16230 195..3955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16230.4520.1

>prot_Ecto-sp13_S_contig16230.4520.1 ID=prot_Ecto-sp13_S_contig16230.4520.1|Name=mRNA_Ecto-sp13_S_contig16230.4520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
RAGSASETPTARKTAPPPLQRVEARRGEDAPAALWRSKVRGRQMVFSLLE
SARIEEEDMEEALLAWPPSTSEGGGRGGREAAFHSLDEIRRRNARELDAL
MAEYDPRPSRNLPQHALDRRLRMALPWPEITQEVVAGGNRDAASCRHAVR
DQRETFGQGGRGGGGGGGGGGGGGEHADIDNECNGAECAGGDRKQYHREG
EGERAWSLSRSDGAGGRAAVDGGAVSGEIGGSDQVDDDARGGEARGKAVA
GAGGGASATAVAGRGTEEFHPEPSPCRTSASPTCGADASDDDTEDTAVAI
SASPTKRAATEDGRPARGGVEGGDQTKRLETGQRKKPTLPDPNHVNGSVM
ADPFNMDHIKDLPGLVGGDNRGLSRIVSDTVSYIDPAFPNLEFHRRAAMD
RAGYFMPGYKPQV
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mRNA from alignment at Ecto-sp13_S_contig16230:195..3955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16230.4520.1 ID=mRNA_Ecto-sp13_S_contig16230.4520.1|Name=mRNA_Ecto-sp13_S_contig16230.4520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16230:195..3955+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGGCTCTGCATCGGAAACTCCCACCGCCAGGAAAACAGCACCACC
CCCACTCCAACGCGTCGAAGCACGCCGCGGAGAAGATGCCCCTGCCGCTC
TTTGGCGGAGCAAGGTGCGCGGCAGGCAGATGGTGTTCTCGCTGCTCGAA
TCAGCTCGGATTGAGGAGGAGGATATGGTAAGGACGAGGCGTAAACATCC
ACGCTAACAAAAGGCTTCGTGTGCACCCATGCTGCACTTATTGCCATTAA
CCTGAACTACGCTACCAGTGGATCGTATGACGGGGGGAGGGGGGGTTCCA
AAAAGAGGTCCAACACTATAGTAGACGGCGCACAATCTGTTGAAATCTTT
TGGTTGTACCCGTTTGCAAATGGAGGAGACATGGGAGGTTTTGTTGGTGG
AGGTCGTTTTTTGCTTGCCTCAGTCATTTGACGATTGAACACGCTTCACC
CCCATTCGAGATCGAGCACTATTCCCACTCTTAGTACAGACTCCCAACCT
TTGTGGGCCTGCCATACTCTACGTACAGGAGCCTCTTCGTCTGTCGCCGA
GTACTGGTGACCATCCGTTTCATACGACAGCGATCGTTTTCTCAGTTGAT
GTTCTAGTCGTCGTCATTGTTGTCTTGTCTCCACAGTTGAAATCAGGGCT
AACCTCTGTCCAGTGCCACTTCTTCCCTGTTATTCAACGCCGACAGCCAA
ACAGATTTCCTTTTGTCACAAGATAACCCAGGCACCGCCTAGGTTCATCT
GCATATCGCACACATCAATTTATTTGTTCTCTCGGGAGTCTCTCTCTTGC
CTTACCACACGGTGTATCTCGTGTACGATTGCGTTGCTTCTCCACCCCAC
GTCCGGTATATAACGCCCGCCCTTTTGGCAAGCCCATGTCCCCCGCTCGA
CGTTTCCACTTCAACGTTGTCGCAGAGTCCATCGGATTTTTTGAGATTCG
CTCCCCTTCTTGTTTGTTCTCAAAACTTCCCGTCTGACGTCGAAGTGTGC
CTCACATGCCACACATTCGTTCTTAGCACCATCTTGTCTCTTCTCTGGTC
TATTTCCTTCTTGATTTCCTGGCATCCCTCGGAAGTCTCAGTCGCCTGTG
TAGCCCTGTGGTTTACATCTTTGTATTTCCTTGCCATCCCGATTTCGGCA
TCCAACAACATTCCAGGATATCACTCACTACATCTCCCGTGACATCCTTG
CAACTACAGTCGACAACATCGATGGGGACGGGAGGGACGGGGGGGTCATT
GGCGAAGCAGCCTGTACTGCTTATTTCCGTATTAGTAAGACAAGCATCAC
CCCACATTCCACCCATCCACTCTACGGAGAGGGTTCTTTCAGAAACGCAA
GCACACGAAAGGTTGGCCAGTCCGACTGCGTGTAGCTCCAAGGCCGTGCG
CCTTTTGGGGCTGGCTGGTCGGTTTGAAGGAGTTGCGACCAGACACACGC
AATAACGATTCCAAATTCTGTATCGTCGCCGTTCTTTTGTGTCTCGAACA
GGAAGAGGCGTTATTGGCGTGGCCGCCATCGACCAGTGAGGGGGGGGGCA
GGGGGGGGCGAGAGGCGGCCTTTCATAGCCTAGACGAGATCAGAAGAAGA
AACGCCAGAGAGGTCAGTCAGGAACCCTCGATGTTTGTGGTGAGCAAGAG
TACCGACAGCAGTGGTGGCAGTTGGGCATCTAGGGTCAAGAGTGGAAAAT
GACTGAAAACCGGCTGGGAACACTACAGGGCCAATACCAAATTCGGGGGT
AGTCGTATTTCGTATGTAAGGCACTGTTGGCGATGCTACGACGTGAGAGG
AGGGCGTCGCTCTCGACAGGCGGTTAAGCAGTTGGGTGGAATCACTTTTT
CAAATGGTCCCCTCCACAACGAACAAGATTACGAAGTGTGACAATATTTT
TCTACTCACGTTCACGGCGATACACCGATGAATCACCAATGGTTCCACCC
CACTTCTTTTGATGCTTTCTTCCCCGATCTTGAAACCCGTCCTCCATGAA
AATCGCCCTGTTCGACGACACTGGACTCGATTCGAAAGCTCGATGCTCTC
ATGGCGGAGTACGACCCTCGTCCGAGTAGAAATCTACCCCAGCACGCCCT
CGACAGGCGGCTGCGAATGGCACTTCCTTGGCCGGAAATAACCCAAGAAG
TTGTCGCCGGTGGCAATCGTGATGCCGCGAGCTGTCGTCATGCGGTGCGG
GACCAGCGAGAAACCTTCGGCCAAGGGGGGCGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGAGCATGCCGACATCGACAATGAGTGCA
ATGGCGCCGAATGTGCGGGTGGCGATCGGAAACAATACCACAGAGAAGGG
GAAGGGGAAAGGGCTTGGTCACTATCTCGTAGCGATGGCGCAGGCGGGCG
CGCCGCTGTCGACGGCGGAGCTGTCAGCGGCGAAATAGGCGGGTCTGATC
AAGTCGACGACGACGCCCGAGGAGGCGAGGCCAGAGGCAAGGCCGTGGCA
GGTGCTGGCGGCGGTGCTTCAGCAACAGCCGTAGCTGGTCGTGGGACGGA
GGAGTTCCACCCGGAGCCGTCACCATGCAGAACGAGCGCGTCTCCGACTT
GCGGTGCTGACGCTTCTGATGACGACACCGAAGACACCGCCGTCGCGATC
TCCGCGTCGCCAACGAAACGTGCGGCTACCGAAGATGGTAGACCGGCACG
CGGCGGGGTGGAGGGAGGTGATCAGACGAAAAGGCTCGAGACAGGCCAGC
GGAAGGTGCGAAAGGGCGTGACCTCCACACGACGTACGTTCGATGGAACA
ACTTTGCCATATCATACTCGCGGCCTGCAGAACATCGCATTCGTTGTCGG
CCGGAGTACAAAGACTGAGAACTACGGTAGTCGCAGGAACATGCCTGAGG
GAAGTCTCCCGATGCAAGAGGTACCCTCATCACTGGAAGGAGGATCATTT
TGCACAACAGTATCGTGCGTGCATTTCCTCGGGTAGTCGAACCGACCCCT
CCGACGCCTTCGGGTCAAGGTCGACGCCGTTGGCCGCCACCTCTCCTCCA
TCAAAGGCCCGTTGTGTGTCTAGCTAAGGTTTGTTTTCATCAGAAACCAC
GATTGCCCCCTCTCTCGCTCTTCGTCCTGCAAACACCGTGCAGAAGCCGA
CGCTCCCCGATCCAAACCACGTCAACGGGTCTGTCATGGCTGACCCTTTC
AACATGGACCACATAAAGGTGGGTTGCTGCACATGGGGGTCGGGTGTGCC
TTTTCACTTTCAAAGCCTACATCCGTGACCGGCAGGCCTCTGCTTCAAAT
ATCGTAAGGAATAAATGATTGGTTAATCGTATTTGGTGGCAAGTCTTCTG
TAGGCATGTGTTCACAGTCGGCAGTATGTTTTGTGTTCTCTAACCCCTGG
AAACGACCGGCAAGTCCGGAGAACAGAGTCCAGCGATGCAACAAGAAAGC
GACATTTTCGCTTATTTTCAGGGCATCCGTGAGTAAGATCGCCACCATCC
TGAGAGTCGTGGGCTTCGTAGCGGCGGCTACGGCAAGCCCCGCACGGGGT
GTTCCCCTCGCTCCGGTTCCTTTACCTATCACCCTGCAACAACGTACCAC
AGGATTTGCCCGGGTTAGTCGGTGGAGATAACCGTGGGCTAAGCCGGATA
GTATCGGACACGGTAAGCTATATCGATCCCGCGTTTCCCAACCTCGAGTT
TCACCGGCGGGCGGCGATGGACAGAGCGGGCTACTTCATGCCGGGATACA
AGCCCCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16230:195..3955+

>mRNA_Ecto-sp13_S_contig16230.4520.1 ID=mRNA_Ecto-sp13_S_contig16230.4520.1|Name=mRNA_Ecto-sp13_S_contig16230.4520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16230:195..3955+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGGCTCTGCATCGGAAACTCCCACCGCCAGGAAAACAGCACCACC
CCCACTCCAACGCGTCGAAGCACGCCGCGGAGAAGATGCCCCTGCCGCTC
TTTGGCGGAGCAAGGTGCGCGGCAGGCAGATGGTGTTCTCGCTGCTCGAA
TCAGCTCGGATTGAGGAGGAGGATATGGAAGAGGCGTTATTGGCGTGGCC
GCCATCGACCAGTGAGGGGGGGGGCAGGGGGGGGCGAGAGGCGGCCTTTC
ATAGCCTAGACGAGATCAGAAGAAGAAACGCCAGAGAGCTCGATGCTCTC
ATGGCGGAGTACGACCCTCGTCCGAGTAGAAATCTACCCCAGCACGCCCT
CGACAGGCGGCTGCGAATGGCACTTCCTTGGCCGGAAATAACCCAAGAAG
TTGTCGCCGGTGGCAATCGTGATGCCGCGAGCTGTCGTCATGCGGTGCGG
GACCAGCGAGAAACCTTCGGCCAAGGGGGGCGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGAGCATGCCGACATCGACAATGAGTGCA
ATGGCGCCGAATGTGCGGGTGGCGATCGGAAACAATACCACAGAGAAGGG
GAAGGGGAAAGGGCTTGGTCACTATCTCGTAGCGATGGCGCAGGCGGGCG
CGCCGCTGTCGACGGCGGAGCTGTCAGCGGCGAAATAGGCGGGTCTGATC
AAGTCGACGACGACGCCCGAGGAGGCGAGGCCAGAGGCAAGGCCGTGGCA
GGTGCTGGCGGCGGTGCTTCAGCAACAGCCGTAGCTGGTCGTGGGACGGA
GGAGTTCCACCCGGAGCCGTCACCATGCAGAACGAGCGCGTCTCCGACTT
GCGGTGCTGACGCTTCTGATGACGACACCGAAGACACCGCCGTCGCGATC
TCCGCGTCGCCAACGAAACGTGCGGCTACCGAAGATGGTAGACCGGCACG
CGGCGGGGTGGAGGGAGGTGATCAGACGAAAAGGCTCGAGACAGGCCAGC
GGAAGAAGCCGACGCTCCCCGATCCAAACCACGTCAACGGGTCTGTCATG
GCTGACCCTTTCAACATGGACCACATAAAGGATTTGCCCGGGTTAGTCGG
TGGAGATAACCGTGGGCTAAGCCGGATAGTATCGGACACGGTAAGCTATA
TCGATCCCGCGTTTCCCAACCTCGAGTTTCACCGGCGGGCGGCGATGGAC
AGAGCGGGCTACTTCATGCCGGGATACAAGCCCCAGGTA
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