mRNA_Ecto-sp13_S_contig16175.4498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16175.4498.1
Unique NamemRNA_Ecto-sp13_S_contig16175.4498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A6H5L5D5_9PHAE (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D5_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 4.170e-83
Identity = 119/130 (91.54%), Postives = 122/130 (93.85%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  RGIFLFNKLSQISEWKKDHRWK+DQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDL SLK+ +    G
Sbjct:   22 AQGRGIFLFNKLSQISEWKKDHRWKADQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLQSLKMFLTLKHG 151          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: D8LLT6_ECTSI (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT6_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 4.230e-81
Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  RGIFLFNKLSQISEWKKDHRWK+DQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKK+EDYDKEVGCKWDL SLK+ +    G
Sbjct:  142 AQGRGIFLFNKLSQISEWKKDHRWKADQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKAEDYDKEVGCKWDLQSLKMFLTLKHG 271          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A835ZCT8_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT8_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.570e-61
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  RGIFLFNKLSQIS+WKKDH W+ DQPQAE+YIAQRY+ NP  +GGKKFDLRLYVLVTSF+PL VWLY  GFARFSG RY  +R ++ N YVHLTNVAIQKK+E YD+ VGCK  LH+LK+++    G
Sbjct:  115 AQGRGIFLFNKLSQISDWKKDHNWRPDQPQAESYIAQRYIMNPCTVGGKKFDLRLYVLVTSFSPLAVWLYGAGFARFSGQRYTQERGSMGNVYVHLTNVAIQKKAEGYDRGVGCKLALHALKLLLTARHG 244          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S3D9R4_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D9R4_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 1.950e-58
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  +GIFLFNKLSQISEW+KDH+WK+D PQAE YI QRY+ENPYLIGGKKFDLR+YV+VTS+NPLTV+LY  GF RFS  R+   +  + N ++HLTNVAIQK + +Y    GCKW L SLK+ +    G
Sbjct:   32 AQGKGIFLFNKLSQISEWRKDHKWKADSPQAETYIVQRYIENPYLIGGKKFDLRIYVMVTSYNPLTVYLYRSGFGRFSNERFSMRKDEIQNNFIHLTNVAIQKTNPEYQAGTGCKWSLRSLKLYLMSKHG 161          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S3G4H8_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4H8_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 5.290e-57
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  +GIFLFNKLSQISEW+KDH+WK+D PQAE YI QRY+ENPYLIGGKKFDLR+YV+VTS+NPLTV+LY  GF RFS  R+   +  + N ++HLTNVAIQK + +Y    GCKW L SLK+ +    G
Sbjct:  140 AQGKGIFLFNKLSQISEWRKDHKWKADSPQAETYIVQRYIENPYLIGGKKFDLRIYVMVTSYNPLTVYLYRSGFGRFSNERFSMRKDEIQNNFIHLTNVAIQKTNPEYQAGTGCKWSLRSLKLYLMSKHG 269          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S3DBK5_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBK5_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 1.070e-56
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  +GIFLFNKLSQISEW+KDH+WK+D PQAE YI QRY+ENPYLIGGKKFDLR+YV+VTS+NPLTV+LY  GF RFS  R+   +  + N ++HLTNVAIQK + +Y    GCKW L SLK+ +    G
Sbjct:   32 AQGKGIFLFNKLSQISEWRKDHKWKADSPQAETYIVQRYIENPYLIGGKKFDLRIYVMVTSYNPLTVYLYRSGFGRFSNERFSMRKDEIQNNFIHLTNVAIQKTNPEYQAGTGCKWSLRSLKLYLMSKHG 161          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A0M0JEH9_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEH9_9EUKA)

HSP 1 Score: 189 bits (480), Expect = 1.350e-56
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFGL 396
            A  RGIFLFNKLSQI++WKKDH+WKSD+PQAE Y+ QRY+ENP L+GGKKFD+R+YVLVT+++PLTV+LY  GFARFS  R+ T    L++ YVHLTN AIQK    YDK+ GCKW L  LK+ + G +G+
Sbjct:  143 AQGRGIFLFNKLSQINDWKKDHKWKSDEPQAEIYVVQRYIENPLLVGGKKFDMRIYVLVTAYSPLTVYLYRSGFARFSLYRFETTAKNLSDTYVHLTNAAIQKTGPAYDKQAGCKWSLRHLKLYLMGKYGM 273          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S3G4H5_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=6 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4H5_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 1.720e-55
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  +GIFLFNKLSQISEW+KDH+WK+D PQAE YI QRY+ENPYLIGGKKFDLR+YV+VTS+NPLTV+LY  GF RFS  R+   +  + N ++HLTNVAIQK + +Y    GCKW L SLK+ +    G
Sbjct:  140 AQGKGIFLFNKLSQISEWRKDHKWKADSPQAETYIVQRYIENPYLIGGKKFDLRIYVMVTSYNPLTVYLYRSGFGRFSNERFSMRKDEIQNNFIHLTNVAIQKTNPEYQAGTGCKWSLRSLKLYLMSKHG 269          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S0PTM5_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PTM5_9EUKA)

HSP 1 Score: 186 bits (473), Expect = 3.750e-55
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFGL 396
            A  +GIFLF+KLSQI+EWKKDH+WK D PQAE Y+ QRY+ENP LIGGKKFDLR+Y LVTSF PL V+LY  GFARFS  RY T++  L + YVHLTNVA+QK    YD   GCKW L +LK+ + G FG+
Sbjct:  143 AQGKGIFLFSKLSQITEWKKDHKWKPDSPQAETYVVQRYLENPMLIGGKKFDLRIYALVTSFMPLVVYLYRSGFARFSSFRYNTNQKNLGDTYVHLTNVAVQKTGPGYDAGAGCKWPLRNLKLYLIGKFGV 273          
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Match: A0A7S3LN32_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LN32_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.840e-53
Identity = 79/130 (60.77%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    4 APNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLHSLKVMIAGSFG 393
            A  +GIFLFNKLSQIS+WKKDH+WKSD PQAE+Y+AQRYV+ PY +GGKKFD+RLYVLVTSF+PLTVW++  GFARF+ TRY +D++ + + Y+HLTN +IQKK++D+++E+  KW +  LK+ +    G
Sbjct:   69 AQGKGIFLFNKLSQISDWKKDHKWKSDAPQAESYVAQRYVDRPYTVGGKKFDMRLYVLVTSFSPLTVWMHRNGFARFTNTRYNSDKSNINDSYMHLTNHSIQKKAKDHNQEL--KWGVDGLKLFLMSRHG 196          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16175.4498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5D5_9PHAE4.170e-8391.54Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
D8LLT6_ECTSI4.230e-8190.77Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
A0A835ZCT8_9STRA2.570e-6170.00Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tr... [more]
A0A7S3D9R4_9EUKA1.950e-5863.08Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Pa... [more]
A0A7S3G4H8_9EUKA5.290e-5763.08Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pa... [more]
A0A7S3DBK5_9EUKA1.070e-5663.08Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pa... [more]
A0A0M0JEH9_9EUKA1.350e-5663.36Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ch... [more]
A0A7S3G4H5_9EUKA1.720e-5563.08Tubulin--tyrosine ligase-like protein 9 n=6 Tax=Pa... [more]
A0A7S0PTM5_9EUKA3.750e-5564.12Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Co... [more]
A0A7S3LN32_9STRA1.840e-5360.77Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16175contigEcto-sp13_S_contig16175:708..2118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score254.6
Seed ortholog evalue2.5e-65
Seed eggNOG ortholog2880.D8LLT6
Preferred nameTTLL9
Model size396
KEGG koko:K16603
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
Cds size396
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.590986-CDS-Ecto-sp13_S_contig16175:707..8001681462853.590986-CDS-Ecto-sp13_S_contig16175:707..800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16175 708..800 +
1681462853.6092067-CDS-Ecto-sp13_S_contig16175:1644..17961681462853.6092067-CDS-Ecto-sp13_S_contig16175:1644..1796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16175 1645..1796 +
1681462853.6231637-CDS-Ecto-sp13_S_contig16175:1967..21181681462853.6231637-CDS-Ecto-sp13_S_contig16175:1967..2118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16175 1968..2118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16175.4498.1prot_Ecto-sp13_S_contig16175.4498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16175 708..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16175.4498.1

>prot_Ecto-sp13_S_contig16175.4498.1 ID=prot_Ecto-sp13_S_contig16175.4498.1|Name=mRNA_Ecto-sp13_S_contig16175.4498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
AAPNRGIFLFNKLSQISEWKKDHRWKSDQPQAEAYIAQRYVENPYLIGGK
KFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNV
AIQKKSEDYDKEVGCKWDLHSLKVMIAGSFGL
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mRNA from alignment at Ecto-sp13_S_contig16175:708..2118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16175.4498.1 ID=mRNA_Ecto-sp13_S_contig16175.4498.1|Name=mRNA_Ecto-sp13_S_contig16175.4498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16175:708..2118+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCTCCGAACAGGGGGATCTTCTTGTTCAACAAGCTGAGTCAAATCAG CGAGTGGAAGAAGGACCACCGATGGAAATCGGACCAACCCCAGGTAACTA TTTTGCCGCTTTTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGATGTTGTTGCTGCCGACGTGGCCGT CGCCGTCTTCATCGCACTCGTGGTGGTGGTTGTTGTAACGGGTGGCCGGC CGTCCTCGTTGACATCGCGTTCCTGTTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGTTACTGTTGTTTTATTTGCGGGGTTGG GGTACTGTCGTTGCTGCTGCCACAGGAGGCATTGTTGTTGCCGTGCTATC AGGCAAGTCGTTGGCTTGTCGTCTTTTACCTGTGCTGTTTCTTCCCCGGT ACCCCCAAGAGATCTGGGGGTTGACTCCAACACCACGCGGGCTGATGACA GGTGGACCCTCGACGTACGCGCCGATGCACACGCGTGGTGATCAGAAAAG GACGATATTTTAGCATGAACCCGCTACAAAGCCGCCCGCCCTCCCAAGCA ACAGTTGTGTTCTGAGTGCCCTCCAGTCCACCTGTTCGCCCATCCTCCTT CCAGAACTTGTTTCCTTATCGGAGTCCTACGGTATTTTCAAGGTACCGTA TTCTCAAGAAAAGGTATTCGTCACACGCGGGTCCGGGTTACACGATCGTT CCCTTGTGTGCTGCCGTGTCAGCACAAATTGTCGGCTCTCGCGTGTTGCT TTTCTCTTGGATTCACCCTTGCCCTTTCTTCCGTGCATGTTCGACACTGG TATGCCTTGAAGTCGTCGTTTCCTTTTTCCTTTTTCTTTTTTTGGCATTT TTCTTCGTTTTACGATCCAAAAAATGGAAACCCCCAGGCCGAGGCGTACA TCGCACAGCGGTACGTGGAAAACCCGTACCTGATCGGCGGTAAGAAGTTT GACCTCAGGCTGTACGTGCTGGTGACTTCCTTCAACCCCCTCACGGTGTG GCTCTACAACGGGGGGTTCGCGCGATTCTCGGGCACAAGGTGATGGAGGT CGCACCCTGCATGTTTGCTACTAGCGCGGTGCGATGTTATCTACTAAAGG GCTACCACGACTTAGAGAGAGAGGGAAGGAGCGGGACAACGACGCTCATG CGAAATATCGATACATCAGTCCTACTGAATCGGAAAGGGCTTCGGTGGTT GCGCCCGCAGGTACTGCACCGACAGGGCGGCGCTGGCTAACCCTTACGTG CACCTCACGAACGTGGCGATCCAGAAGAAGTCGGAGGACTACGATAAGGA GGTCGGCTGCAAGTGGGACCTGCACAGCCTAAAGGTGATGATTGCAGGTT CGTTTGGCCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16175:708..2118+

>mRNA_Ecto-sp13_S_contig16175.4498.1 ID=mRNA_Ecto-sp13_S_contig16175.4498.1|Name=mRNA_Ecto-sp13_S_contig16175.4498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16175:708..2118+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCTCCGAACAGGGGGATCTTCTTGTTCAACAAGCTGAGTCAAATCAG
CGAGTGGAAGAAGGACCACCGATGGAAATCGGACCAACCCCAGGCCGAGG
CGTACATCGCACAGCGGTACGTGGAAAACCCGTACCTGATCGGCGGTAAG
AAGTTTGACCTCAGGCTGTACGTGCTGGTGACTTCCTTCAACCCCCTCAC
GGTGTGGCTCTACAACGGGGGGTTCGCGCGATTCTCGGGCACAAGGTACT
GCACCGACAGGGCGGCGCTGGCTAACCCTTACGTGCACCTCACGAACGTG
GCGATCCAGAAGAAGTCGGAGGACTACGATAAGGAGGTCGGCTGCAAGTG
GGACCTGCACAGCCTAAAGGTGATGATTGCAGGTTCGTTTGGCCTG
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