prot_Ecto-sp13_S_contig1616.4489.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1616.4489.1
Unique Nameprot_Ecto-sp13_S_contig1616.4489.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length445
Homology
BLAST of mRNA_Ecto-sp13_S_contig1616.4489.1 vs. uniprot
Match: A0A6H5JGQ1_9PHAE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ1_9PHAE)

HSP 1 Score: 834 bits (2155), Expect = 8.090e-302
Identity = 423/444 (95.27%), Postives = 425/444 (95.72%), Query Frame = 0
Query:    1 MTSPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVMVRVASPKITAAFNGRLLESITLDVDDDDDGDAGVNGGTDGMAVGKGTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRTGTMKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALR 444
            M SPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDV VRVASPKITAAFNGRLLES TLD DD        NGGTDGMAV K TSYSTCYRFSTETLTAARAVGLAVGRFAAWDVP SPRVKGLVL+AASAGGGGR GTMKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLW AVQKAVALDCDLGCPSISPPT DLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVR+ KADLALR
Sbjct:  176 MMSPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESTTLDDDDGXXXXXXANGGTDGMAVRKRTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPHSPRVKGLVLKAASAGGGGRAGTMKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWRAVQKAVALDCDLGCPSISPPTPDLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVRDAKADLALR 619          
BLAST of mRNA_Ecto-sp13_S_contig1616.4489.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 858 bits (2218), Expect = 1.440e-299
Identity = 433/444 (97.52%), Postives = 434/444 (97.75%), Query Frame = 0
Query:    1 MTSPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVMVRVASPKITAAFNGRLLESITLDVDDDDDGDAGVNGGTDGMAVGKGTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRTGTMKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALR 444
            M SPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDV VRVASPKITAAFNGRLLESITLD D    GD GVNGGTDGMAVGK TSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGR+GTMKSERRRAVDNSLIA AGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALR
Sbjct:  179 MMSPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESITLDDDXXXXGDVGVNGGTDGMAVGKRTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRSGTMKSERRRAVDNSLIAGAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALR 622          
BLAST of mRNA_Ecto-sp13_S_contig1616.4489.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.660e-17
Identity = 82/293 (27.99%), Postives = 115/293 (39.25%), Query Frame = 0
Query:   60 VEWELLHPRSGVVF--KAAREGFSAN----HMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVMVRVAS-----------PKITAAFNGRLLESITLDVDDDDDGDAGVNGGTDGMAVGKGTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRTGTMKSERRRAVD-------------NSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDD-------RIPDGDLPGDARLSAVEVLL 315
            V +EL  P +G+++     + G +A     H  TTY+H  +D+DGPRCWFPCVD  +    +++++ + S                                                +      +    F+T+T T AR VGLAVG F  W  P +PR+ G  L     GG                                       LA + + V+F ++WL  DYPF+  T VFV GL    APFG L LL+ ELLC  D        R+PD +  GD   +  E LL
Sbjct:  156 VSYELYEPAAGLIWCHGGNQSGPAARRLPAHCRTTYAHGAVDVDGPRCWFPCVDAPAQSCVFELVLDLPSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXPLPRARRLHFATDTCTTARGVGLAVGPFQHWVDPLAPRLHGYYL--VPDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRAEQVARTLAALRSVVTFAQEWLNVDYPFQTATHVFVGGLEGRHAPFGGLVLLRDELLCPIDPCAHAPPPRLPDDNAHGDTHAAVAEGLL 446          
BLAST of mRNA_Ecto-sp13_S_contig1616.4489.1 vs. uniprot
Match: D2V9A2_NAEGR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V9A2_NAEGR)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 78/351 (22.22%), Postives = 143/351 (40.74%), Query Frame = 0
Query:   84 HMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVMVRVASPKITAAFNGRLLESITLDVDDDDDGDAGVNGGTDGMAVGKGTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRTGTMKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYP----FKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAY--YARLKAVLILHMAEVKVQPADMQDALGSVMR 428
            HMYT        M G RCWFPCVD  S   S++  +  +  +     +G L++ +                  +  +    TSY     F T+++ +  +V +AVG F       +     L+L A           + S    ++ ++L          V  A+ FLED+L+  Y           VF+E      + F  +CLL +  +  E + I   D   D R+S V ++   +    +  +     WL+ GIAG+L  ++     G+  K+ ++  A ++ +         SI   T  LYI +   P+     Y   K+ L+++M + ++  ++M++ L   ++
Sbjct:  291 HMYTQ-----SQMQGARCWFPCVDLLSSFHSFEFEI-TSHAEAMIICSGDLIKQV------------------ENYSGTLKTSY-----FKTKSIISPSSVCIAVGPFNISYSSLTLNSYDLILNAFY---------LPSYSLESIRHTL--------GFVKRALIFLEDYLEFKYKDLFNLNTLNIVFIENGYTKQSTFSGICLLDSNQMILEPNII---DTVQDNRMSLVRLITEQFFGNFIHSKTWSDYWLIEGIAGYLAYQYYESEFGQNAKRFKIMKAGKELL---------SIENHTQSLYIENYCHPSELLTEYLLKKSPLVIYMIDRQISTSNMRNLLNKFLK 583          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1616.4489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGQ1_9PHAE8.090e-30295.27Transcription initiation factor TFIID subunit 2 n=... [more]
D7G4X2_ECTSI1.440e-29997.52Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA2.660e-1727.99Transcription initiation factor TFIID subunit 2 n=... [more]
D2V9A2_NAEGR2.000e-722.22Transcription initiation factor TFIID subunit 2 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.390.60coord: 226..432
e-value: 1.5E-9
score: 39.5
NoneNo IPR availableSUPERFAMILY63737Leukotriene A4 hydrolase N-terminal domaincoord: 85..144
IPR037813Transcription initiation factor TFIID subunit 2PANTHERPTHR15137TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 44..428

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1616contigEcto-sp13_S_contig1616:1894..11050 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1616.4489.1mRNA_Ecto-sp13_S_contig1616.4489.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1616 110..16405 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1616.4489.1 ID=prot_Ecto-sp13_S_contig1616.4489.1|Name=mRNA_Ecto-sp13_S_contig1616.4489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=445bp
MTSPAHPSPGSNANMDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKRE
EHAKVICVEVEWELLHPRSGVVFKAAREGFSANHMYTTYSHAPMDMDGPR
CWFPCVDHASILISYDVMVRVASPKITAAFNGRLLESITLDVDDDDDGDA
GVNGGTDGMAVGKGTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSP
RVKGLVLRAASAGGGGRTGTMKSERRRAVDNSLIAAAGSLLAHVPAAVSF
LEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDG
DLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELR
GEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYAR
LKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037813TAF2