prot_Ecto-sp13_S_contig16149.4480.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16149.4480.1
Unique Nameprot_Ecto-sp13_S_contig16149.4480.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.720e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:    1 VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 56
            VSLFLERFQL PDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG
Sbjct:  149 VSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 204
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BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.000e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:    1 VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 56
            VSLFLERFQL P+EVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG
Sbjct:  155 VSLFLERFQLTPNEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC3_ECTSI2.720e-2798.21Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE3.000e-2796.43Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010490Conserved oligomeric Golgi complex subunit 6PFAMPF06419COG6coord: 2..56
e-value: 1.3E-7
score: 30.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16149contigEcto-sp13_S_contig16149:137..307 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16149.4480.1mRNA_Ecto-sp13_S_contig16149.4480.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16149 137..307 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16149.4480.1 ID=prot_Ecto-sp13_S_contig16149.4480.1|Name=mRNA_Ecto-sp13_S_contig16149.4480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGS
SPQSAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010490COG6