mRNA_Ecto-sp13_S_contig16149.4480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16149.4480.1
Unique NamemRNA_Ecto-sp13_S_contig16149.4480.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.720e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 168
            VSLFLERFQL PDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG
Sbjct:  149 VSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 204
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BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.000e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 168
            VSLFLERFQL P+EVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG
Sbjct:  155 VSLFLERFQLTPNEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16149.4480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC3_ECTSI2.720e-2798.21Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE3.000e-2796.43Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16149contigEcto-sp13_S_contig16149:137..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score109.0
Seed ortholog evalue7.4e-22
Seed eggNOG ortholog2880.D8LSC3
Preferred nameCOG6
Model size171
KEGG koko:K20293
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
Exons1
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.9424024-CDS-Ecto-sp13_S_contig16149:136..3071681462851.9424024-CDS-Ecto-sp13_S_contig16149:136..307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16149 137..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16149.4480.1prot_Ecto-sp13_S_contig16149.4480.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16149 137..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16149.4480.1

>prot_Ecto-sp13_S_contig16149.4480.1 ID=prot_Ecto-sp13_S_contig16149.4480.1|Name=mRNA_Ecto-sp13_S_contig16149.4480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
VSLFLERFQLAPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGS
SPQSAG*
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mRNA from alignment at Ecto-sp13_S_contig16149:137..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16149.4480.1 ID=mRNA_Ecto-sp13_S_contig16149.4480.1|Name=mRNA_Ecto-sp13_S_contig16149.4480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16149:137..307- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCCTGTTTCTGGAGAGATTTCAGCTCGCGCCCGACGAAGTCGAGGC
TCTCTCGGCGCAGCTCGAGCCCGACCAAGGCAGGCGCTTCTTCTCCGCCC
TGCTCAGGCTCAAGACCGTTCGGGCCTCTTGCGGTCGGCTGGTGGGGTCC
AGCCCGCAGAGCGCCGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16149:137..307-

>mRNA_Ecto-sp13_S_contig16149.4480.1 ID=mRNA_Ecto-sp13_S_contig16149.4480.1|Name=mRNA_Ecto-sp13_S_contig16149.4480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16149:137..307- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCCTGTTTCTGGAGAGATTTCAGCTCGCGCCCGACGAAGTCGAGGC
TCTCTCGGCGCAGCTCGAGCCCGACCAAGGCAGGCGCTTCTTCTCCGCCC
TGCTCAGGCTCAAGACCGTTCGGGCCTCTTGCGGTCGGCTGGTGGGGTCC
AGCCCGCAGAGCGCCGGGTAA
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