mRNA_Ecto-sp13_S_contig1611.4465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1611.4465.1
Unique NamemRNA_Ecto-sp13_S_contig1611.4465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1611.4465.1 vs. uniprot
Match: D8LCZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ2_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 8.290e-108
Identity = 274/299 (91.64%), Postives = 278/299 (92.98%), Query Frame = 1 
Query:    1 YLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRVPGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RPAVASPSSGAPAPPDAKGTSEQAVRTESDGAGKASPQASDEDSARGALFGGGSRKAKPXXXXXXXXXXXXXXXXXXXXXXXGSARPSGAPEACPIIPEMSADGPGDAELDLGLGDLEASLGTGGXXXXXXLEAMIEAARREAEGLALGGEXXXXXXXXXXXXXX-DIDLT 885
            YLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRVPGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RPAVASPSSGAP P ++KGTSEQA RTESDGAGKASPQASDEDSARGALFGGG RKAKP        XXXXXXXXXXXX   GSA PSGAP+ACPIIPE SADGPGDAE+DLGLGDLEASLGTGGXXXXXXLEAMIEAARREAEGLALGGEXXXXXXXXXXXXXX DIDLT
Sbjct:  297 YLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRVPGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAVASPSSGAPGPANSKGTSEQAWRTESDGAGKASPQASDEDSARGALFGGGPRKAKPSPPTASPAXXXXXXXXXXXXAA-GSAWPSGAPKACPIIPETSADGPGDAEVDLGLGDLEASLGTGGXXXXXXLEAMIEAARREAEGLALGGEXXXXXXXXXXXXXXXDIDLT 594
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1611.4465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCZ2_ECTSI8.290e-10891.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1611contigEcto-sp13_S_contig1611:15153..16313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score338.2
Seed ortholog evalue3.9e-90
Seed eggNOG ortholog2880.D8LCZ2
Model size888
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CYY4@1,2S769@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_001620.1
Cds size888
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.6401532-CDS-Ecto-sp13_S_contig1611:15152..158621681462850.6401532-CDS-Ecto-sp13_S_contig1611:15152..15862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1611 15153..15862 -
1681462850.6527326-CDS-Ecto-sp13_S_contig1611:16135..163131681462850.6527326-CDS-Ecto-sp13_S_contig1611:16135..16313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1611 16136..16313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1611.4465.1prot_Ecto-sp13_S_contig1611.4465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1611 15153..16313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1611.4465.1

>prot_Ecto-sp13_S_contig1611.4465.1 ID=prot_Ecto-sp13_S_contig1611.4465.1|Name=mRNA_Ecto-sp13_S_contig1611.4465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=296bp
YLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRV
PGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYGGGGETPAAARTAA
SPPFGGGGGGGGNGGASSVPPVPPPRPAVASPSSGAPAPPDAKGTSEQAV
RTESDGAGKASPQASDEDSARGALFGGGSRKAKPSPPIASSAAETAAASS
PVAAAAAGSARPSGAPEACPIIPEMSADGPGDAELDLGLGDLEASLGTGG
GGGDDDLEAMIEAARREAEGLALGGEGGGAAEESDEEEEDDIDLT*
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mRNA from alignment at Ecto-sp13_S_contig1611:15153..16313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1611.4465.1 ID=mRNA_Ecto-sp13_S_contig1611.4465.1|Name=mRNA_Ecto-sp13_S_contig1611.4465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1611:15153..16313- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTTCGGTCGGAGGAGTGCCGCGTGGAGGAGGAACTGCTGATAGCGTT
CAAGGACAGCAGGCCGGACCTGCTGATGGAGGCGCAGAAGGACCGGACGC
TGCACCGTCTGGAGACCGCGATCGTGCGCATCGCCAAGTCGCTCCGCGTG
CCCGGCGACGAAGACGATGAAGACGAAGGTGTGTTTTTTGTTTGTGTCTA
AAACGAGCTGTTTTTCTGTTGCGTTGCGAATTGTGTTCGAGTGTGTTACG
AGGTGTGTGTTGTGAAGCGGCTCTCGCCACGGTATTCGTGTACCACGGTA
TTGATATCACCACGGTATTCACATAGCGATGAACCGGTGAACGATTCGCG
TACCGCGCGCCCCCCGCTCCGCCCGCACCTCCGTTCCGCCCGCGTTGCCC
CCCCCCCCCCCCCTTCGCTCCCGCCCGCCGTTCGTGGACGCCCTATTGAA
GATATCATTCCCGCCCGAGAAACGCCATCCGGTACGATTGGCGCCGCGCA
AGCCCGCGCACAAGCCCTCAAGGAAAAATACGGCGGCGGCGGTGAGACAC
CGGCGGCGGCAAGGACGGCTGCATCGCCGCCATTTGGTGGTGGTGGTGGT
GGTGGTGGTAACGGTGGAGCTTCTAGTGTCCCCCCCGTGCCCCCGCCCCG
ACCGGCCGTTGCCTCCCCGTCTTCCGGTGCCCCCGCCCCCCCCGACGCTA
AGGGTACTTCTGAGCAGGCTGTGCGGACAGAGAGCGACGGAGCAGGGAAG
GCATCGCCACAAGCTAGCGACGAAGACTCCGCCAGAGGCGCCCTTTTCGG
TGGAGGATCCCGAAAAGCGAAACCGTCGCCTCCTATCGCAAGTTCGGCGG
CAGAAACCGCGGCCGCGAGTTCACCGGTGGCGGCGGCGGCGGCGGGATCG
GCGCGGCCGTCCGGCGCGCCCGAAGCATGTCCAATCATTCCAGAAATGTC
TGCTGATGGACCGGGCGACGCCGAGCTTGACCTCGGACTGGGTGATCTAG
AGGCCAGCCTAGGCACGGGCGGGGGTGGTGGTGATGATGACTTGGAAGCC
ATGATTGAGGCCGCGAGGAGAGAGGCGGAGGGGTTGGCCCTAGGTGGGGA
GGGGGGGGGCGCCGCTGAAGAGAGCGACGAAGAGGAGGAGGATGATATCG
ATCTGACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1611:15153..16313-

>mRNA_Ecto-sp13_S_contig1611.4465.1 ID=mRNA_Ecto-sp13_S_contig1611.4465.1|Name=mRNA_Ecto-sp13_S_contig1611.4465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1611:15153..16313- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTTCGGTCGGAGGAGTGCCGCGTGGAGGAGGAACTGCTGATAGCGTT
CAAGGACAGCAGGCCGGACCTGCTGATGGAGGCGCAGAAGGACCGGACGC
TGCACCGTCTGGAGACCGCGATCGTGCGCATCGCCAAGTCGCTCCGCGTG
CCCGGCGACGAAGACGATGAAGACGAAGATATCATTCCCGCCCGAGAAAC
GCCATCCGGTACGATTGGCGCCGCGCAAGCCCGCGCACAAGCCCTCAAGG
AAAAATACGGCGGCGGCGGTGAGACACCGGCGGCGGCAAGGACGGCTGCA
TCGCCGCCATTTGGTGGTGGTGGTGGTGGTGGTGGTAACGGTGGAGCTTC
TAGTGTCCCCCCCGTGCCCCCGCCCCGACCGGCCGTTGCCTCCCCGTCTT
CCGGTGCCCCCGCCCCCCCCGACGCTAAGGGTACTTCTGAGCAGGCTGTG
CGGACAGAGAGCGACGGAGCAGGGAAGGCATCGCCACAAGCTAGCGACGA
AGACTCCGCCAGAGGCGCCCTTTTCGGTGGAGGATCCCGAAAAGCGAAAC
CGTCGCCTCCTATCGCAAGTTCGGCGGCAGAAACCGCGGCCGCGAGTTCA
CCGGTGGCGGCGGCGGCGGCGGGATCGGCGCGGCCGTCCGGCGCGCCCGA
AGCATGTCCAATCATTCCAGAAATGTCTGCTGATGGACCGGGCGACGCCG
AGCTTGACCTCGGACTGGGTGATCTAGAGGCCAGCCTAGGCACGGGCGGG
GGTGGTGGTGATGATGACTTGGAAGCCATGATTGAGGCCGCGAGGAGAGA
GGCGGAGGGGTTGGCCCTAGGTGGGGAGGGGGGGGGCGCCGCTGAAGAGA
GCGACGAAGAGGAGGAGGATGATATCGATCTGACCTGA
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