mRNA_Ecto-sp13_S_contig16060.4432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16060.4432.1
Unique NamemRNA_Ecto-sp13_S_contig16060.4432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: D8LS13_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS13_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.140e-42
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            +AVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGG EPGSWQEISSSAERRFGVTFPIMGK
Sbjct:   30 RAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGQEPGSWQEISSSAERRFGVTFPIMGK 101          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: A0A6H5KPS4_9PHAE (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPS4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.960e-27
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    4 AVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            AVLIVNVAS C   +R+Y ELQALR  +DE++LAIVAFPCNQFG  EPG+W+EI+S A+ +FGVTFPIM K
Sbjct:   46 AVLIVNVASHCGYTDRDYRELQALRAKHDEDQLAIVAFPCNQFGAQEPGTWEEIASLADGKFGVTFPIMSK 116          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: UPI0016755F74 (glutathione peroxidase n=1 Tax=Alishewanella tabrizica TaxID=671278 RepID=UPI0016755F74)

HSP 1 Score: 82.4 bits (202), Expect = 3.770e-18
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            + VLIVN AS+C    + Y EL+AL + Y ++ L I+AFPCNQFGG EPGS  EIS   E  +GVTFP+MGK
Sbjct:   25 KVVLIVNTASKCGFTPQ-YKELEALHKQYHDKGLVILAFPCNQFGGQEPGSNAEISQFCEINYGVTFPLMGK 95          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: A0A7W7CFH4_9PSEU (Glutathione peroxidase n=3 Tax=Crossiella TaxID=130795 RepID=A0A7W7CFH4_9PSEU)

HSP 1 Score: 82.4 bits (202), Expect = 4.050e-18
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            +AVLIVNVAS+C    + YL L+A+ E Y E   A+V FPCNQFGG EPGS +EI +     +GVTFP+M K
Sbjct:   24 KAVLIVNVASKCGLTNQ-YLGLEAIHERYAERGFAVVGFPCNQFGGQEPGSAEEIQTFCSTSYGVTFPMMAK 94          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: A0A067NBV4_PLEOS (Glutathione peroxidase n=3 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A067NBV4_PLEOS)

HSP 1 Score: 82.0 bits (201), Expect = 5.460e-18
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGKA 219
            + VLIVNVASQC    + Y  LQAL E Y E+ L I+ FPCNQFGG EPG+  EI++  ER  GVTFP+M K+
Sbjct:   25 KVVLIVNVASQCGFTPQ-YKGLQALYEKYHEKGLEILGFPCNQFGGQEPGTDDEIATFCERNHGVTFPLMAKS 96          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: A0A3R7S1X8_9BACT (Glutathione peroxidase n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A3R7S1X8_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 7.040e-18
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGKAS 222
            +AVL+VNVAS+C    R Y  LQAL+EA+ ++ L +V FPCN FGG EPG+  EI +    ++GVTFP+M K S
Sbjct:   22 KAVLVVNVASRCGFT-RQYAGLQALQEAFKDQGLVVVGFPCNDFGGQEPGTAGEIKTFCSSKYGVTFPMMSKIS 94          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: UPI001FE7BB34 (glutathione peroxidase n=1 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI001FE7BB34)

HSP 1 Score: 82.0 bits (201), Expect = 7.360e-18
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            + VLIVNVASQC    + Y  LQ + E Y +E L I+ FPCNQFGG EPG+  EI++  E+ +GV FP+MGK
Sbjct:   21 KVVLIVNVASQCGFT-KQYKPLQKVHERYSDEGLVILGFPCNQFGGQEPGAPAEIAAFCEKNYGVEFPLMGK 91          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: A0A3M6VL97_9STRA (Glutathione peroxidase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL97_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-17
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            + +L+VNVAS+C   ++NY ELQ L+E Y +E   ++ FPCNQFGG EPG+  EI    + ++ VTFPI  K
Sbjct:   52 RVILVVNVASECGYTDKNYRELQELQEKYYDEGFTVLGFPCNQFGGQEPGTADEIMKFTQEKYHVTFPIFSK 123          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: UPI0015FC3F67 (glutathione peroxidase n=1 Tax=Nocardioides dongkuii TaxID=2760089 RepID=UPI0015FC3F67)

HSP 1 Score: 80.9 bits (198), Expect = 1.650e-17
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            Q VL+VN ASQC    + Y  LQ L++ + E   A++ FPC+QFGG EPGS +EIS   ERRFGVTFP+  K
Sbjct:   29 QVVLVVNTASQCGFTPQ-YQGLQELQDRFGESGFAVLGFPCDQFGGQEPGSDEEISGFCERRFGVTFPLFSK 99          
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Match: UPI0019F07793 (Uncharacterized protein n=1 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI0019F07793)

HSP 1 Score: 82.0 bits (201), Expect = 1.930e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPGSWQEISSSAERRFGVTFPIMGK 216
            + VLIVNVASQC    + Y  LQ + E Y +E L I+ FPCNQFGG EPG+  EI++  E+ +GV FP+MGK
Sbjct:   68 KVVLIVNVASQCGFT-KQYKPLQKVHERYSDEGLVILGFPCNQFGGQEPGAPAEIAAFCEKNYGVEFPLMGK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16060.4432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS13_ECTSI4.140e-4297.22Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KPS4_9PHAE3.960e-2769.01Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
UPI0016755F743.770e-1856.94glutathione peroxidase n=1 Tax=Alishewanella tabri... [more]
A0A7W7CFH4_9PSEU4.050e-1855.56Glutathione peroxidase n=3 Tax=Crossiella TaxID=13... [more]
A0A067NBV4_PLEOS5.460e-1857.53Glutathione peroxidase n=3 Tax=Pleurotus ostreatus... [more]
A0A3R7S1X8_9BACT7.040e-1852.70Glutathione peroxidase n=1 Tax=Phycisphaera sp. TM... [more]
UPI001FE7BB347.360e-1854.17glutathione peroxidase n=1 Tax=Alienimonas chondri... [more]
A0A3M6VL97_9STRA1.130e-1748.61Glutathione peroxidase n=1 Tax=Peronospora effusa ... [more]
UPI0015FC3F671.650e-1754.17glutathione peroxidase n=1 Tax=Nocardioides dongku... [more]
UPI0019F077931.930e-1754.17Uncharacterized protein n=1 Tax=Alienimonas chondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16060contigEcto-sp13_S_contig16060:3121..3923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score143.7
Seed ortholog evalue3.7e-32
Seed eggNOG ortholog2880.D8LS13
Model size234
KEGG rclassRC00011,RC00982
KEGG koko:K00432,ko:K05361
KEGG ReactionR00274,R03167,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04216,ko04918,map00480,map00590,map04216,map04918
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.glutathione peroxidase activity
EggNOG OGsCOG0386@1,KOG1651@2759
EC1.11.1.12,1.11.1.9
Cds size234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.1751685-CDS-Ecto-sp13_S_contig16060:3120..32131681462848.1751685-CDS-Ecto-sp13_S_contig16060:3120..3213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16060 3121..3213 +
1681462848.19405-CDS-Ecto-sp13_S_contig16060:3782..39231681462848.19405-CDS-Ecto-sp13_S_contig16060:3782..3923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16060 3783..3923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16060.4432.1prot_Ecto-sp13_S_contig16060.4432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16060 3121..3923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16060.4432.1

>prot_Ecto-sp13_S_contig16060.4432.1 ID=prot_Ecto-sp13_S_contig16060.4432.1|Name=mRNA_Ecto-sp13_S_contig16060.4432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
QAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGLEPG
SWQEISSSAERRFGVTFPIMGKASYCT*
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mRNA from alignment at Ecto-sp13_S_contig16060:3121..3923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16060.4432.1 ID=mRNA_Ecto-sp13_S_contig16060.4432.1|Name=mRNA_Ecto-sp13_S_contig16060.4432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16060:3121..3923+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCTGATAGTAAACGTCGCCAGCCAGTGCAGCACGGCGGAAAG GAACTACCTAGAGCTGCAGGCACTACGAGAAGCATACGACGAGGTGCGCA ATCATAGCTTTTCGAGTGTTGAATTTTTTGTTTGTTTAAGGCAAATTGGT GTGGTGAACGTCGGAAAGCTTTTGTGCGGGGCTTACTCCCGGTAGAAGCG TTGCTGCACTGGCCATGCTGCCACTCACGTTTTTTTCATCCCAACCATGC CTTGTGGTCGTCGCGATCATGCCCAAGATGAGCTAGAGTTATCACCAGTC TCTCGACAGCACGCGTTGGCTCATTCTCCAAAACGAACAACACAGCAACA ACAGAAAGCGACATCAGAGCGGTCGAGACCTTTGTTTACATCAGAGTGTG CTGTGACAAACTAGGACAGCCTGTCTCCTCCGGAACCGATCTGAACCCTC TATGGACGGGGTGCGCTCTTAAAACAAACGAAATTTGAGGTCCGCCACAG AAGCGAGTGTATGGTGGCACACCAAAATGGAGTGTGGCCATTCTAGAAAA AACGGGCAGTCCAATCGCCTGCAGACTTGGATGAGACAAACCACCAGATA GCCCTTGACGTCCCCCACCCACTCCCTCGTGCCTCTCTCCTCCGTGCTCT CCCTCTCGTTAGGAAGAGCTCGCCATCGTAGCCTTCCCGTGCAACCAATT TGGCGGACTAGAGCCGGGCAGCTGGCAAGAGATATCTAGTTCAGCGGAGA GAAGATTCGGCGTCACGTTTCCCATCATGGGCAAGGCAAGTTATTGCACC TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16060:3121..3923+

>mRNA_Ecto-sp13_S_contig16060.4432.1 ID=mRNA_Ecto-sp13_S_contig16060.4432.1|Name=mRNA_Ecto-sp13_S_contig16060.4432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16060:3121..3923+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCTGATAGTAAACGTCGCCAGCCAGTGCAGCACGGCGGAAAG
GAACTACCTAGAGCTGCAGGCACTACGAGAAGCATACGACGAGGAAGAGC
TCGCCATCGTAGCCTTCCCGTGCAACCAATTTGGCGGACTAGAGCCGGGC
AGCTGGCAAGAGATATCTAGTTCAGCGGAGAGAAGATTCGGCGTCACGTT
TCCCATCATGGGCAAGGCAAGTTATTGCACCTAA
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