mRNA_Ecto-sp13_S_contig16029.4413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16029.4413.1
Unique NamemRNA_Ecto-sp13_S_contig16029.4413.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.280e-22
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1
Query:   19 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXX VCAPVR
Sbjct:  900 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXXVCAPVR 967          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.550e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   19 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP 135
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP
Sbjct:  107 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP 145          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: B8LBX0_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX0_THAPS)

HSP 1 Score: 82.0 bits (201), Expect = 5.040e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+Q+C  XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:    1 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKDQKCVXXXXXXXXXXXXXXXXXXXXXXPVCGPVR 74          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A835Z3F1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.150e-19
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHASKCPAE  +C VTPHC  MK+LW+HIA CK Q C +XXXXXXXXXXXXXXXXX    AVCAPVR
Sbjct:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 74          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A7S1UG10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG10_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.660e-17
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAE---GEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHASKCP +   G+QC VTPHC +MK+LWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX+VCAPVR
Sbjct:  398 QQRLLLLRHASKCPFDSESGQQCTVTPHCASMKKLWKHIAECKDQRCQVXXXXXXXXXXXXXXXXXXXXXSVCAPVR 474          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A7S4ILK3_9STRA (Histone acetyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILK3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.390e-17
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHASKCP E  +CKVTP+C +MKRLW+HI++C++QQCP+  XXXXXXXXXXXXXXXXXXX  CAPVR
Sbjct:  164 QQRLLLLRHASKCPYEDGKCKVTPYCASMKRLWRHISDCRDQQCPVQHXXXXXXXXXXXXXXXXXXXXACAPVR 237          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A7S4MNF2_9STRA (Histone acetyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNF2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.420e-17
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHASKCP E  +CKVTP+C +MKRLW+HI++C++QQCP+  XXXXXXXXXXXXXXXXXXX  CAPVR
Sbjct:  164 QQRLLLLRHASKCPYEDGKCKVTPYCASMKRLWRHISDCRDQQCPVQHXXXXXXXXXXXXXXXXXXXXACAPVR 237          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A8J2ST16_9STRA (Histone acetyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST16_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.300e-17
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    7 RLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            RLLLLRHASKCP E  +C VTPHC  MKRLWKHIAECK+QQC + XXXXXXXXXXXXXXXXXXXXAVC PVR
Sbjct:  230 RLLLLRHASKCPHENGKCPVTPHCAGMKRLWKHIAECKDQQCQMAXXXXXXXXXXXXXXXXXXXXAVCGPVR 301          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A6U3SN67_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SN67_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.500e-17
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:   72 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKDQKCMVXXXXXXXXXXXXXXXXXXXXXPVCGPVR 145          
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.380e-17
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 222
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:  199 QQRLLLLRHAAKCPHENGKCPVTPHCAGMKRLWKHIAECKDQKCQVXXXXXXXXXXXXXXXXXXXXXPVCMPVR 272          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16029.4413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPY4_9PHAE3.280e-2298.53Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
D8LPT9_ECTSI2.550e-20100.00Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
B8LBX0_THAPS5.040e-1981.08Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A835Z3F1_9STRA7.150e-1977.03Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A7S1UG10_9STRA1.660e-1780.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4ILK3_9STRA2.390e-1777.03Histone acetyltransferase n=1 Tax=Odontella aurita... [more]
A0A7S4MNF2_9STRA2.420e-1777.03Histone acetyltransferase n=1 Tax=Odontella aurita... [more]
A0A8J2ST16_9STRA3.300e-1783.33Histone acetyltransferase n=1 Tax=Pelagomonas calc... [more]
A0A6U3SN67_9STRA4.500e-1781.08Histone acetyltransferase (Fragment) n=1 Tax=Skele... [more]
A0A7S2VVC1_9STRA8.380e-1781.08Histone acetyltransferase (Fragment) n=1 Tax=Tripa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16029contigEcto-sp13_S_contig16029:829..1253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.7457309-UTR-Ecto-sp13_S_contig16029:828..8801681462846.7457309-UTR-Ecto-sp13_S_contig16029:828..880Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16029 829..880 -
1681462846.775305-UTR-Ecto-sp13_S_contig16029:1197..12531681462846.775305-UTR-Ecto-sp13_S_contig16029:1197..1253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16029 1198..1253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.7557685-CDS-Ecto-sp13_S_contig16029:880..9151681462846.7557685-CDS-Ecto-sp13_S_contig16029:880..915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16029 881..915 -
1681462846.7662344-CDS-Ecto-sp13_S_contig16029:1118..11971681462846.7662344-CDS-Ecto-sp13_S_contig16029:1118..1197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16029 1119..1197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16029.4413.1prot_Ecto-sp13_S_contig16029.4413.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16029 881..1197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16029.4413.1

>prot_Ecto-sp13_S_contig16029.4413.1 ID=prot_Ecto-sp13_S_contig16029.4413.1|Name=mRNA_Ecto-sp13_S_contig16029.4413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MQGYAALPGYEALVEAHRRVQEPAVPDSTLRVVSLRA*
back to top

mRNA from alignment at Ecto-sp13_S_contig16029:829..1253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16029.4413.1 ID=mRNA_Ecto-sp13_S_contig16029.4413.1|Name=mRNA_Ecto-sp13_S_contig16029.4413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16029:829..1253- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGCGGCTGTTGCTGCTGCGACACGCGAGCAAGTGCCCTGCGGAGGG GGAGCAATGCAAGGTTACGCCGCACTGCCAGGCTATGAAGCGCTTGTGGA AGCACATCGCCGAGTGCAAGAACCAGCAGTGCCCGGTAAGCTTTTCCTTT TTCCTTCTTCTTTGTTTTTGCCTCGTTGGTTGTACTTTTAAGTGCTGGCA AGGTTTCATGTTGGTAGTGATATATGGCGTTGGGGTGGTGGTTGTAGTTG CGAAGTTGTCGTTCGTCGTTTGCAACACACGCACACCCCAGGCTGCTGCT GCTAACTACTGCTGCTGTTGCTGCTGCTGTTGCCGCAGATTCCACACTGC GTGTCGTCTCGCTTCGTGCTTAGCCACTACCATCGATGTAAGGACCTCAA GTGTGCCGTGTGCGCTCCCGTGCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16029:829..1253-

>mRNA_Ecto-sp13_S_contig16029.4413.1 ID=mRNA_Ecto-sp13_S_contig16029.4413.1|Name=mRNA_Ecto-sp13_S_contig16029.4413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16029:829..1253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGTTACGCCGCACTGCCAGGCTATGAAGCGCTTGTGGAAGCACA
TCGCCGAGTGCAAGAACCAGCAGTGCCCGATTCCACACTGCGTGTCGTCT
CGCTTCGTGCTTAG
back to top