mRNA_Ecto-sp13_S_contig15998.4394.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15998.4394.1
Unique NamemRNA_Ecto-sp13_S_contig15998.4394.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A6H5KL56_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL56_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 7.600e-136
Identity = 196/258 (75.97%), Postives = 200/258 (77.52%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCKRVGQ--------------------------------------------------------ALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR 606
            + +WMDKHPGGSEVVHLMAGRDATDAFASYHPFT+KPQKMLPKFEIGTLVSREFTPYKRDESGFYREMC RVGQ                                                        ALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDF+AGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR
Sbjct:   63 ITNWMDKHPGGSEVVHLMAGRDATDAFASYHPFTNKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCTRVGQYFEDNKLNPKGVWPGVWRMTLVFACAIAAFLATNGFWPSVPLSVRFLTAALFGVLQALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFFAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR 320          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A835Z094_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z094_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.710e-94
Identity = 150/259 (57.92%), Postives = 167/259 (64.48%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCKRVG---------------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR 606
            +  W+D HPGG EV+ LMAGRDAT AF SYHPFTDKP+K+L KFE+G + + EF  Y+ D SGFY  M KR+                                                          QA+PLLHVMHDSSHTAFG +Q W S+GGRLFMDFYAGAN+TSWHYQHVVGHHIYTNV+ ADPDLP   EGDPRRLV RQ    +Y+YQHLYLPPLYGILGLKFRIQDLT TFFG  NGPVRVNPIS YR
Sbjct:   59 LTSWVDNHPGGREVLLLMAGRDATAAFESYHPFTDKPRKILGKFEVGAVSNHEFPQYRPD-SGFYSTMNKRLAAYFKENKLNPKSPWPGVWRMILVSACAVACFLACNNFWAGALPPWARVLAAAAFGVLQAMPLLHVMHDSSHTAFGNSQAWWSYGGRLFMDFYAGANMTSWHYQHVVGHHIYTNVYQADPDLPVADEGDPRRLVDRQTWKPLYQYQHLYLPPLYGILGLKFRIQDLTDTFFGGKNGPVRVNPISTYR 316          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A3L6VXG3_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VXG3_9STRA)

HSP 1 Score: 247 bits (631), Expect = 3.050e-78
Identity = 134/254 (52.76%), Postives = 155/254 (61.02%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVS-REFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISL 600
            V  W+DKHPGG+E+V L +GR+ATD F SYHPF+D+ +K+L K+EIGTL    EF  YK D +GFYRE  KRVG                                                     QALPLLHVMHDSSH AF +      F GRLFMD++AGA++ SW  QHVVGHHIYTNV GADPDLP   EGD RR+V RQ    MY++QHLYLPPLYG+LGLKFRIQD T TF   TNGP+RVNP SL
Sbjct:   51 VTSWVDKHPGGAEMVTLHSGREATDTFDSYHPFSDRAEKVLAKYEIGTLAGPAEFPVYKPD-TGFYRECRKRVGEYFDKNKINPQAGFAGFWRMIVVMAIAAATYYGMHFSTILAVQVAAAAIFGVCQALPLLHVMHDSSHAAFTKQPFIREFTGRLFMDWFAGASMVSWLNQHVVGHHIYTNVAGADPDLPVDFEGDVRRIVTRQVLKPMYRFQHLYLPPLYGLLGLKFRIQDFTDTFVSLTNGPIRVNPPSL 303          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: W4HC19_9STRA (Cytochrome b5 heme-binding domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HC19_9STRA)

HSP 1 Score: 247 bits (631), Expect = 4.920e-77
Identity = 134/254 (52.76%), Postives = 155/254 (61.02%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVS-REFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISL 600
            V  W+DKHPGG+E+V L +GR+ATD F SYHPF+D+ +K+L K+EIGTL    EF  YK D +GFYRE  KRVG                                                     QALPLLHVMHDSSH AF +      F GRLFMD++AGA++ SW  QHVVGHHIYTNV GADPDLP   EGD RR+V RQ    MY++QHLYLPPLYG+LGLKFRIQD T TF   TNGP+RVNP SL
Sbjct:   51 VTSWVDKHPGGAEMVTLHSGREATDTFDSYHPFSDRAEKVLAKYEIGTLAGPAEFPVYKPD-TGFYRECRKRVGEYFDKNKINPQAGFAGFWRMIVVMAIAAATYYGMHFSTILAVQVAAAAIFGVCQALPLLHVMHDSSHAAFTKQPFIREFTGRLFMDWFAGASMVSWLNQHVVGHHIYTNVAGADPDLPVDFEGDVRRIVTRQVLKPMYRFQHLYLPPLYGLLGLKFRIQDFTDTFVSLTNGPIRVNPPSL 303          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A024US17_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US17_9STRA)

HSP 1 Score: 247 bits (631), Expect = 4.920e-77
Identity = 134/253 (52.96%), Postives = 155/253 (61.26%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVS-REFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPIS 597
            V  W+DKHPGG+E+V L +GR+ATD F SYHPF+DK +K+L K+EIGTLV   EF  YK D SGFYRE  KRVG                                                     QALPLLHVMHDSSH AF +      F GRLFMD++AGA++ SW  QHVVGHHIYTNV GADPDLP   + D RR+V RQ   S+Y++QHLYLPPLYG+LGLKFRIQD T TF   TNGP+RVNP S
Sbjct:   51 VTSWVDKHPGGAEMVILHSGREATDTFDSYHPFSDKAEKVLAKYEIGTLVGPAEFPVYKPD-SGFYRECRKRVGEYFEKNNINPQAGFAGFWRMTVVMAVAAASYYGMHFSPVLAVRVVSAAIFGICQALPLLHVMHDSSHAAFTKQPFIREFAGRLFMDWFAGASMVSWLNQHVVGHHIYTNVAGADPDLPVNFDSDVRRIVSRQMMHSIYRFQHLYLPPLYGLLGLKFRIQDFTDTFGSLTNGPIRVNPPS 302          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A6G0XP74_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP74_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.190e-75
Identity = 129/252 (51.19%), Postives = 150/252 (59.52%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPIS 597
            V  W+DKHPGG E+V L AGR+ TD F SYHPF+DK +++L K+EIGTL      P  + +SGFY+E  KRVG                                                     QALPLLHVMHDSSH AF +      F GRLFMD++AGA++ SW  QHVVGHHIYTNV GADPDLP   EGD RRLV RQ    MY++QH+YLPPLYG+LGLKFRIQD T TF   TNGP+RVNP S
Sbjct:   51 VTAWVDKHPGGREMVLLHAGRECTDTFDSYHPFSDKAEQVLAKYEIGTLTGPSEFPVYKPDSGFYKECRKRVGEYFEKNKLNPQDGFAGFWRMIVVVSVAAVAYYGMHFSNIFTVQAIAAVVFGFCQALPLLHVMHDSSHAAFTKQPFIREFAGRLFMDWFAGASMVSWLNQHVVGHHIYTNVTGADPDLPVNLEGDIRRLVTRQVLLPMYRFQHIYLPPLYGLLGLKFRIQDFTDTFGTLTNGPIRVNPPS 302          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A485KGN4_9STRA (Aste57867_5066 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGN4_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.090e-72
Identity = 127/256 (49.61%), Postives = 150/256 (58.59%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVS-REFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR 606
            V  W+DKHPGG E+V + +GR+ATD+F SYHPF+ K + +L K+EIGT     EF  YK D +GFY+E+ KRVG                                                     QALPLLHVMHDSSH AF        F GRLFMD++AGA++ SW  QHV+GHHIYTNV GADPDLP     D RRLV RQ    MY YQHLYLPPLYG+LGLKFR QD T TF   TNGP+RVNP S+++
Sbjct:   51 VTQWVDKHPGGREMVLIHSGREATDSFDSYHPFSGKAESVLAKYEIGTFTGPTEFPVYKPD-TGFYKELRKRVGDYFKQNKLDHQAGFAGFWRMVVVVAVAAVAFYAMNFSRIYPIRVLAAAVFGICQALPLLHVMHDSSHAAFTNKPIIREFAGRLFMDWFAGASMVSWLNQHVIGHHIYTNVAGADPDLPVNFTSDLRRLVERQVFQPMYAYQHLYLPPLYGLLGLKFRFQDFTDTFCSLTNGPIRVNPPSVFQ 305          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A1V9ZN17_9STRA (Delta(5) fatty acid desaturase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN17_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.620e-70
Identity = 121/253 (47.83%), Postives = 146/253 (57.71%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISL 600
            V +W +KHPGG E+V L AGR+ATD F SYHPF+DK + +L K+EIGT       P  + ++GFY+E  KRVG                                                     QALPLLHVMHDSSH ++     +H   GR  MD++AG ++ SW  QHVVGHHIYTNV G+DPDLP   +GD RR+V RQ    MY +QHLYLPPLYG+LGLKFRIQD T TF   TNGPVRVNP +L
Sbjct:   50 VTEWANKHPGGREMVLLHAGREATDTFDSYHPFSDKAESILKKYEIGTFTGPTEFPTFKPDTGFYKECRKRVGEYFKKNKLHPQAGFAGLWRMTIVFAVAAVALYGMHFSSCFSVQLAAAALFGVCQALPLLHVMHDSSHASYTNVPFFHYVVGRFAMDWFAGGSMVSWLNQHVVGHHIYTNVAGSDPDLPVNMDGDVRRIVDRQVFKGMYAFQHLYLPPLYGVLGLKFRIQDFTETFGSHTNGPVRVNPHAL 302          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: A0A067CQD0_SAPPC (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQD0_SAPPC)

HSP 1 Score: 229 bits (583), Expect = 1.180e-69
Identity = 120/253 (47.43%), Postives = 146/253 (57.71%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREFTPYKRDESGFYREMCKRVG-----------------------------------------------------QALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISL 600
            V +W  KHPGG E+V L AGR+ATD F SYHPF+DK + +L K+EIGT       P  + +SGFY+E  KRVG                                                     QALPLLHVMHDSSH ++     +H   GR  MD++AG ++ SW  QHVVGHHIYTNV G+DPDLP   +GD RR+V+RQ    MY +QH+YLPPLYG+LGLKFRIQD T TF   TNGP+RVNP +L
Sbjct:   69 VTEWATKHPGGREMVLLHAGREATDTFDSYHPFSDKAESILNKYEIGTFTGPTEFPTFKPDSGFYKECRKRVGEYFKKNNLHPQDGFPGLWRMMLVFAVAGLALYGMHFSTIFALQLAAAALFGVCQALPLLHVMHDSSHASYTNMPFFHYVVGRFAMDWFAGGSMVSWLNQHVVGHHIYTNVAGSDPDLPVNMDGDIRRIVNRQVFQPMYAFQHIYLPPLYGVLGLKFRIQDFTDTFGSHTNGPIRVNPHAL 321          
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Match: Q8H0N8_PHYME (Delta 5 fatty acid desaturase n=1 Tax=Phytophthora megasperma TaxID=4788 RepID=Q8H0N8_PHYME)

HSP 1 Score: 224 bits (571), Expect = 5.430e-68
Identity = 122/256 (47.66%), Postives = 147/256 (57.42%), Query Frame = 1
Query:    1 VVDWMDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVS-REFTPYKRDESGFYREMCKRVGQ-------------------------------------------------------ALPLLHVMHDSSHTAFGRTQNWHSFGGRLFMDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKNASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISL 600
            V +W D+HPGG E+V L +GR+ TD F SYHPF+D+  K+L K+ IG LV   EF  YK D +GFY+E C RV Q                                                       ALPLLHVMHD+SH A   +       GRL MD+ AGAN+ SW  QHVVGHHIYTNV GADPDLP   + D RR+V+RQ    +YKYQHLYLPPLYG+LGLKFR+QD+  TF   TNGP+RVNP+S+
Sbjct:   55 VTEWADRHPGGRELVLLHSGRECTDTFDSYHPFSDRADKILAKYAIGKLVGGSEFPTYKPD-TGFYKECCDRVNQYFKDNKLDPRSPYSGLWRMILVAIVGAVAYMGMNQLLPGNIYAHYAWGALFGVCQALPLLHVMHDASHAAITSSPTGWRLIGRLAMDWVAGANMVSWLNQHVVGHHIYTNVAGADPDLPVDFKSDVRRIVYRQVLLPIYKYQHLYLPPLYGVLGLKFRVQDVFETFVTLTNGPLRVNPLSV 309          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15998.4394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL56_9PHAE7.600e-13675.97Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835Z094_9STRA1.710e-9457.92Fatty acid desaturase n=1 Tax=Tribonema minus TaxI... [more]
A0A3L6VXG3_9STRA3.050e-7852.76Cytochrome b5 heme-binding domain-containing prote... [more]
W4HC19_9STRA4.920e-7752.76Cytochrome b5 heme-binding domain-containing prote... [more]
A0A024US17_9STRA4.920e-7752.96Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6G0XP74_9STRA2.190e-7551.19Cytochrome b5 heme-binding domain-containing prote... [more]
A0A485KGN4_9STRA1.090e-7249.61Aste57867_5066 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZN17_9STRA2.620e-7047.83Delta(5) fatty acid desaturase n=1 Tax=Achlya hypo... [more]
A0A067CQD0_SAPPC1.180e-6947.43Cytochrome b5 heme-binding domain-containing prote... [more]
Q8H0N8_PHYME5.430e-6847.66Delta 5 fatty acid desaturase n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15998contigEcto-sp13_S_contig15998:3..3690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score424.1
Seed ortholog evalue3.6e-116
Seed eggNOG ortholog2880.D7FJM7
Model size606
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0019752,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0048856,GO:0050896,GO:0055114,GO:0071704,GO:0071944,GO:0072330,GO:1901576
Exons5
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
Cds size594
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15998.4394.1prot_Ecto-sp13_S_contig15998.4394.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15998 3..3678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.2218547-CDS-Ecto-sp13_S_contig15998:2..831681462845.2218547-CDS-Ecto-sp13_S_contig15998:2..83Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15998 3..83 -
1681462845.231508-CDS-Ecto-sp13_S_contig15998:436..6041681462845.231508-CDS-Ecto-sp13_S_contig15998:436..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15998 437..604 -
1681462845.2396054-CDS-Ecto-sp13_S_contig15998:1073..12081681462845.2396054-CDS-Ecto-sp13_S_contig15998:1073..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15998 1074..1208 -
1681462845.248296-CDS-Ecto-sp13_S_contig15998:2639..27441681462845.248296-CDS-Ecto-sp13_S_contig15998:2639..2744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15998 2640..2744 -
1681462845.2573574-CDS-Ecto-sp13_S_contig15998:3573..36781681462845.2573574-CDS-Ecto-sp13_S_contig15998:3573..3678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15998 3574..3678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.2719622-UTR-Ecto-sp13_S_contig15998:3678..36901681462845.2719622-UTR-Ecto-sp13_S_contig15998:3678..3690Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15998 3679..3690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15998.4394.1

>prot_Ecto-sp13_S_contig15998.4394.1 ID=prot_Ecto-sp13_S_contig15998.4394.1|Name=mRNA_Ecto-sp13_S_contig15998.4394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MDKHPGGSEVVHLMAGRDATDAFASYHPFTDKPQKMLPKFEIGTLVSREF
TPYKRDESGFYREMCKRVGQALPLLHVMHDSSHTAFGRTQNWHSFGGRLF
MDFYAGANLTSWHYQHVVGHHIYTNVFGADPDLPETAEGDPRRLVHRQKN
ASMYKYQHLYLPPLYGILGLKFRIQDLTGTFFGKTNGPVRVNPISLYR
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mRNA from alignment at Ecto-sp13_S_contig15998:3..3690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15998.4394.1 ID=mRNA_Ecto-sp13_S_contig15998.4394.1|Name=mRNA_Ecto-sp13_S_contig15998.4394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15998:3..3690- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTAGACTGGATGGACAAGCACCCTGGTGGTTCGGAGGTTGTGCATCT GATGGCAGGGAGAGACGCCACCGACGCCTTTGCGTCATACCACCCCTTTA CTGACAAGCCTCAAAAGGTCTGTGTTTCCATTGTTGTTGTGGACGTTGTT GTTCTTGTTGTTCTTATTGTTGTTATTGTTGTTGCTGCTGCTGCTGTTGG AAGTGTTGGTGTTGGTGGTTAATCGTGGTGTGTGTTGCTGCAACCGGCCT CTCGCCATCACCACCCCTTGAACAAGCTAGAAGAAGCAAGGTCACACGAG ACGTAAAACAACAGCGCGAACCGCGTCGGACGCGACAGTATTGTTCTTGA TACGCAAGCAGCAAGCTGGCCTGCGTGTCAAAGAAATACACAGAACTGTT GTATGTTTGTGTTTGGTGCTGTTGTTTTACGTCTCACGTGGCCTGTTGCT CCTTCCTGCGCGTTGAAGGGGCGATGATGGCGAGGCAGAGTGTATGCCAA CAGAATACCTGCTTCGTTTCCAGCCTTGGCGAGGGTATTAATATTGGTTT TGGTAGGGGTCGTGTGTTTTGGTTGAGGCGATGGCTCGGGTTACGAAACC CCCTTCCTCTCCATGTAGCATACAACGCTTTCCTAACGCTTTATTTATCG CTTTACATCCTCGACAAGGCGGTCCTTCGTCACTGCAGCCTTCTTTTGAA AACATCTAGGATTCAAGTACAGATTTGGAGATGAATCGAAGACTTTCGAT TGGCCCACGTCAAGCGGCAATTCTACCCCCTCATCAGCCGTCACCACGAC AGAGACCGCCCGTGCTTCGCGGGGCTGCTATGCTGCTTCTTCCACGTTTC ACTTCGTATTTCGTCCTCTTTTCTGTTGCCGACACGAATTGTTTGTCGCG TCGCGTCTTTTGCCCTTACCGACCCTCATGAACTTGGGCCGACTAGATGC TGCCCAAGTTTGAGATCGGCACTCTGGTGTCGAGGGAGTTCACACCGTAC AAACGCGACGAGTCCGGCTTCTACCGGGAGATGTGCAAGCGAGTCGGGCA GGTGAGGAAAAGAAAATTTTGTGCGTACATTTTTTTTCCATCGACCGCGC AAACAGGCTGACTATTGAAAATACGCCAGTCTCAGTGCCGTTGAAAACAC AAAAGAATGTTTTTTATTTGTGAACGCTATGGTGTAGGATCCCGTGAGGG GGCGTCATTTGTATGTGTGTGTTGATGTTTGCCTTCTGTTTTTGCTGGTG GTTTCGGGCAAGACAAAATGAGTGGAGTCTTGGTACTGGGACGACCAACA TTCCGTGGAGCGGGACAGCGATCAACATCGATGAATCCCTGAATGACATG GTAATGGTTGTGTGCGGTTGGTTTCGTTACGTTAGTAAGACTCCTGCAGC CTCGAAGATGTGCCGGGTCGATGAGACACGTTGTTTTGCCGCCTGTCTCG TTTCTCTCCTCCCAACTCTGCTGAGATAATTAGTCTCTTGTTCCCTCTCC CTGTTGCTTTTCCTGTTCACCCGGCAACGACCACAACCCCGTACTGCACC TCCCCGTTGATTATCTTCACACGATCTCTCTTCTCTCTCTCTCTCTCTCC CTGTCTCACTCTCTGTCTCTCCCACGCGGCAGTACTTCGAGGACAACAAG CTCAACCCCAAGGGCGTCTGGCCCGGCGTGTGGAGGATGACGCTTGTGTT CGCTTGCGCGATCGCCGCCTTCCTGGCTACGAACGGATTCTGGCCTTCCG TACCGCTCTCCGTACGGTTCCTCACCGCCGCTCTCTTCGGCGTGCTGCAG GTGTGTGTGTGTAAAATGTCTTCATTCTTGATGTCGACCCCGCTAACCGG GTGATCAATGAATAGACGCCACAGTTTTTGCTGGGACGTGCGTGTTTTTG TCTTTTTTTTGGCATCGACATTGTTGACCGGCAGAAACCAATGAAAATGC GGTAGTCTCATGGCGTAATGTGTGTGTGTCTTTATTCTTAGCATCGACCG CGGTGACGGGGTGATCAATGAAGATACGTCAGTCTCAGTGCGACCAGGCA TGTATGCCTTTGTTCCTAGCATGGATTGGGGCAACCGGGCGATCAACGGA TAGCGTCAGTCTCGTCGATGCTACATGTGTGTCTTCGTTTTGTAGAGCTT GGACCCGGTAACCGGCTGACTAATGAAAATACGTCAGCCTCAGTGCGGCC AATATCTCGTGAAACTCTTACGCGTGTTCATGTGTGTTGGGTGTGGATGT TTGGATAGTATCGACCGCGCTAGCTATCTGACCAATGAACGGATACCTGT CTCAGTACGGTTAGAAGCAGCAACAAGCGCTTGGAAACGCCATGATCTGG GGCCCTTTGAGGGTTCATGGCACTGGCTAGGCAATTCTCCAGATTGAAGA CAGAAACGGCAATTTTTGCTGTTGAATGCATTATTTTTTCTCTTCTCGGC GTTTTCATTTTTTGTATTTTTTTTTTCGGCAGGCGCTGCCGCTGCTGCAC GTGATGCACGACAGCTCGCACACGGCCTTCGGCCGAACGCAGAACTGGCA CTCGTTCGGCGGACGTCTTTTCATGGACTTCTACGCAGGAGCCAACCTCA CCTCATGGCACTACCAGGTACGCGAACAGGCGGACGGCTCCCCGAGCAGT CTCCCCACCGCTGATGACCGGAAAATTTTAGTGTGTGACTGTTTTATATT TACTTCAAGTTTGTAGTATTTATGTCGGGACAATCTACCGCCCACCGCCT TTGAGACCAAGAGTTAAAGGCGACTGATCGGAGATTAATAGGCGTGCTTG GATGTTGGTGGTCACGAGGGGAATCGGGGTGAACGTGTCAGAGCTTTGCT CAACTAGGCGCAGTCGAGCGCGAGTGGGAGATGGAACGCGTCTTCCGTGC GCGTCTCAGCGCTTTTTTTCGACCAGTATGCACCGGCGTGCGAGCTCATG GTGCTAAAGTCAGCGAGCGGTCACAAAAGAAGTCGAGCTCCACCACTCTG TATTGCATTTCGTCCAATTTTCTCATCGTTGCGGTGCACTTTTTTTTGTT CGCTGTTTTGCCGTTTCGGACGCCACTTTCAATCAGCACGTGGTAGGACA CCACATCTACACGAACGTTTTCGGGGCGGACCCTGACCTTCCGGAGACTG CGGAGGGGGACCCCCGTCGGCTGGTGCACCGACAGAAGAACGCCTCCATG TACAAGTACCAGCACCTGTACCTTCCCCCTCTTTACGGCATATTGGGCCT GAAGGTAAGGCCGTTGTTGTTGTTGGTGGTGGTAGTGGTGGTCGTGGTGG TGGCGGTGCTGCTACTGTTTTTGTTGTCGGGGGTGGTGTTGTTGGTGTTG ATGTTGTTGTTGTTGTTTTATGGGTGCTGTGATGGTCCTGTGGATTTTGT TGCTGGTGTTGGTGTTGGTGCTTGTGTGATGGCATTGTTGTGAACACGTT CTTGCTAGACGGGCCATGCGTCACGGCCAGAGATTGTTTCGACAGTGGTA CCTGTGCTGTCTCAAGACATATCTCCCATTTCTGAACCGGCTACACAATT GTCGTCGTCGGCGTACACTGCCACCGTCATCATCTCGACGCTCTGGCTGT CCTCCAGTTCCGCATCCAAGACCTCACGGGAACGTTCTTCGGAAAGACGA ACGGACCGGTGCGGGTGAACCCCATCTCCCTGTACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15998:3..3690-

>mRNA_Ecto-sp13_S_contig15998.4394.1 ID=mRNA_Ecto-sp13_S_contig15998.4394.1|Name=mRNA_Ecto-sp13_S_contig15998.4394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15998:3..3690- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGCACCCTGGTGGTTCGGAGGTTGTGCATCTGATGGCAGGGAG
AGACGCCACCGACGCCTTTGCGTCATACCACCCCTTTACTGACAAGCCTC
AAAAGATGCTGCCCAAGTTTGAGATCGGCACTCTGGTGTCGAGGGAGTTC
ACACCGTACAAACGCGACGAGTCCGGCTTCTACCGGGAGATGTGCAAGCG
AGTCGGGCAGGCGCTGCCGCTGCTGCACGTGATGCACGACAGCTCGCACA
CGGCCTTCGGCCGAACGCAGAACTGGCACTCGTTCGGCGGACGTCTTTTC
ATGGACTTCTACGCAGGAGCCAACCTCACCTCATGGCACTACCAGCACGT
GGTAGGACACCACATCTACACGAACGTTTTCGGGGCGGACCCTGACCTTC
CGGAGACTGCGGAGGGGGACCCCCGTCGGCTGGTGCACCGACAGAAGAAC
GCCTCCATGTACAAGTACCAGCACCTGTACCTTCCCCCTCTTTACGGCAT
ATTGGGCCTGAAGTTCCGCATCCAAGACCTCACGGGAACGTTCTTCGGAA
AGACGAACGGACCGGTGCGGGTGAACCCCATCTCCCTGTACCGG
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