mRNA_Ecto-sp13_S_contig15985.4386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE) HSP 1 Score: 432 bits (1111), Expect = 5.340e-141 Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 1
Query: 1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
ISTELVRTLWPMLEAVPGRMG SPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGS DEA+EHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFL+FCP GLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLR FSE
Sbjct: 859 ISTELVRTLWPMLEAVPGRMGGSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSTDEAMEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLIFCPAGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRTFSE 1091
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A835YMS8_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS8_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.640e-54 Identity = 118/235 (50.21%), Postives = 150/235 (63.83%), Query Frame = 1
Query: 10 ELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVY-GSADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACV------GAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAF 693
EL+++L P+++AV GR S EVM QLFLLVGK L+SLR + A Q HIP L +++D YPCCL+ M TAVEVY G + + VEHF LL R TFT Q PG PQLV ++F L +R+LLF P LL +L T L LAVAC+ ERESARAV +F+G LA RC G+LD Y +++A L G AL RL+ LA A+PS+LWPNLID L+A+L +
Sbjct: 761 ELLQSLRPLVDAVAGRCQGSEEVMAQLFLLVGKALSSLRSLPALQAHIPAFLNIMLD-----HYPCCLECMGTAVEVYSGESAQVVEHFGQLLARVCAETFTYFQGR-HPGAEPQLVAAFFTLAYRYLLFAPAALLQGRDLATILDLAVACLDVGGGGSGTTQERESARAVAIFVGHLAQRCSGKLDAYSQQIDAVLVDRGGALVRLILVGLARAAPSMLWPNLIDCLHAILHQY 989
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A5D6XHI0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHI0_9STRA) HSP 1 Score: 118 bits (296), Expect = 7.060e-27 Identity = 89/244 (36.48%), Postives = 131/244 (53.69%), Query Frame = 1
Query: 1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG------SADEA-----VEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
+++ +V+ +WP LE V R+ VM LF L G L SLR +A Q+ + + I+ +D HQ+ L+ AV+V+G S D + V FR LLG S F A G+ P ++R+++EL +RF+LFCP +L S++L + L +ACVG D R S AVLVFL L G+L ++ +V AA+ PH + AALA SPS+L+ L L+ALL F++
Sbjct: 803 VTSSVVQHVWPHLEPVVPRLRAHEPVMDALFQLYGWCLQSLREEMASQLDV--IADAIVHVFDAHQFVAPLECAAVAVDVFGKRGGSDSGDASLSPAVVSSFRELLGLLSCTAFRFFTTHAL-GDAPDVLRAFYELAYRFVLFCPAAVLLSSDLPVLIELGLACVGNQD--RASTNAVLVFLTFLLAESRGKLAPFQAQVGAAVLPHVAEWVDALVAALAAKSPSILFDALGRLLFALLSNFAD 1041
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: G4ZGJ0_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZGJ0_PHYSP) HSP 1 Score: 107 bits (266), Expect = 6.880e-23 Identity = 83/238 (34.87%), Postives = 129/238 (54.20%), Query Frame = 1
Query: 1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQV-HIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
++T V+ +WP L+ + R M LF L G L SLR +A Q+ +I TL I+ ++E +Y L+ + AV+V+G ++ E VE FR L+G S F + E P+++RS+FEL +RFLLFCP +L + E + L++AC+G D R S AV++FL L +L + + A++ G+ L + ALA SPS L+ +L LYALL +F++
Sbjct: 709 VTTWAVQLIWPHLDPITPRFEADEAAMTALFELYGWCLQSLRQEMAPQLGNIATL---IVKVFEERRYVAPLECASVAVDVFGKDASAEIVESFRGLMGALSQSAFQFFTTHSL-AESPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACLGNQD--RPSTNAVIMFLTYLLNESTFKLAVFTAVINASVLDAGQTEKWLDSLVGALASKSPSGLFESLGKLLYALLTSFAD 940
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A8K1FCT5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCT5_PYTOL) HSP 1 Score: 106 bits (264), Expect = 1.260e-22 Identity = 77/223 (34.53%), Postives = 121/223 (54.26%), Query Frame = 1
Query: 13 LVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADE----AVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLM---FAALAGASPSLLWPNL 660
+V T+WP LE V R+ VM LF L G L SLR +A Q+ P + +I+ +++H + L+ + AV+V+G E +E FR L+G S F + G+ P L+R+++EL +RFLL+CP ++ ++E L L+ ACVG D R S AV+VF+ L G+L R++GE++ + L + + +ALA SPS+L+ L
Sbjct: 661 VVETIWPHLELVSTRLSAHEAVMNALFELHGWCLRSLREEMAPQL--PLVATLIVSVFEQHFFVSSLECASIAVDVFGRTAEQDAAVLESFRGLMGMLSRVAFQFFTSRG-VGDAPDLLRAFYELGYRFLLYCPAAVVTASEFPVLLDLSRACVGNQD--RVSTNAVVVFVSYLLTESRGKLQRFQGEIDRFVWGDATVLEQWLDTVLSALASQSPSVLYDTL 878
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: K3XCD1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCD1_GLOUD) HSP 1 Score: 102 bits (254), Expect = 2.690e-21 Identity = 73/240 (30.42%), Postives = 129/240 (53.75%), Query Frame = 1
Query: 1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADEAVEH----FRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLM---FAALAGASPSLLWPNLIDALYALLRAFSE 699
+++ V+ +WP LE + R+ VM LF G L SLR +A Q+ ++ +I+ +++HQ+ L + AV+++G +A E FR L+G S +F + G+ P ++RS++EL +RFLLFCP ++ S+E + L++AC+G D R S AVL+FL L G+L ++ ++ + L + + +ALA SP++L+ ++ +A+L F+E
Sbjct: 660 VTSSAVQHIWPHLEPIAPRLSHHEAVMDALFQFYGWCLQSLRDDMASQLG--SIASLIVHVFEKHQFVSPLGCASVAVDIFGKTADANEQVLTSFRELMGMLSRTSFQFFTTHSL-GDAPDVLRSFYELAYRFLLFCPAAVITSSEFPVLIELSLACLGNQD--RGSTNAVLMFLTFLVNESRGKLAHFQASIDDCVLGQQGQLEKWIDGILSALATKSPNILFDSMGKLFFAVLSTFAE 894
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A0W8CLQ1_PHYNI (Eukaryotic translation initiation factor 6 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CLQ1_PHYNI) HSP 1 Score: 101 bits (252), Expect = 4.820e-21 Identity = 80/233 (34.33%), Postives = 125/233 (53.65%), Query Frame = 1
Query: 16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
V+ +WP L+ + R T VM LF L G L SLR +A ++ I TL I+ +++ ++ L+ + AV+V+G ++ + VE FR L+G S F + E P ++RS+FEL +RFLLFCP LL++ E + LA+AC+G D R S AV++FL L +L + + A++ G+ L + ALA SPS L+ L Y+LL +F++
Sbjct: 557 VQQIWPHLDPITPRFETYEVVMTALFELYGWCLQSLRQEMASELGGIATL---ILRVFEQRRFVAPLECASVAVDVFGKDASADIVESFRGLMGALSQSAFQFFTTHSL-AESPDVLRSFFELAYRFLLFCPAALLSAPEFPVLIDLALACLGNQD--RPSTNAVVMFLTYLLNESTIKLASFTATINASVLDAGQTEKWLDSLIGALASKSPSALYDALSKLFYSLLTSFAD 783
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: D0NLI9_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLI9_PHYIT) HSP 1 Score: 101 bits (251), Expect = 6.730e-21 Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 1
Query: 16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
V+ +WP L+ + R+ VM LF L G L SLR +A ++ I TL I+ +++ ++ L+ + AV+V+G ++ E VE FR L+G S F + E P ++RS+FEL +RFLLFCP LL++ E + L +AC+G D R S AVL+FL L +L + + A++ G+ L + ALA SPS L+ +L LY LL +F++
Sbjct: 677 VQQIWPHLDPITPRLEAYEAVMVALFELYGWCLQSLRQEMAPELGGIATL---ILRVFEQRRFVAPLECASVAVDVFGKDASAEIVESFRGLMGALSQSAFHFFTTHSL-AESPDVLRSFFELAYRFLLFCPAALLSAPEFPVLIGLGLACLGNQD--RPSTNAVLMFLTFLLNESTIKLASFTATINASVLDAGQTEKWLDSLIEALASKSPSALYDSLSKLLYTLLASFAD 903
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A3R7H5D9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5D9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.060e-19 Identity = 83/240 (34.58%), Postives = 127/240 (52.92%), Query Frame = 1
Query: 1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG---SAD-EAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHG--EALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
I+ V+ +WP L + R+ VM LF L G L SL+ +A Q+ I TL I+ ++E ++ L+ AV+V+G SAD + V+ FR L+G S F + E P+++RS+FEL +RFLLFCP +L + E + L++ACVG D R S AVL+FL L +L + + A++ G E + +ALA SPS+L+ + L+ALL +F +
Sbjct: 674 ITAWAVQLIWPHLNVLVLRLEADEAVMAALFQLYGWCLQSLQQEMAPQLGGIATL---IVKVFEERRFVAPLECAAVAVDVFGKGGSADPQIVDSFRGLMGALSQSAFQFFTTHSL-AEAPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACVGNQD--RTSTNAVLMFLTFLLNESTIKLAAFTPIINASVLDAGQTEKWFENLVSALALKSPSVLYDAIAKLLFALLSSFPD 907
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A662XYV5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYV5_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.410e-19 Identity = 75/238 (31.51%), Postives = 123/238 (51.68%), Query Frame = 1
Query: 16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSAD--------EAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
V+ +WP L+ + R+ + M LF L G L SLR +A H+ + +I+ +++ ++ L+ AV+V+G D + V FR L+G S F + + P+++RS+FEL +RFLLFCP +L + E + L++ACVG D R SA AVL+FL L +L + + A++ G+ L + ALA SPS+L+ + +ALL +F++
Sbjct: 615 VQLIWPHLDLLVPRLESDEAAMTALFQLYGWCLQSLRQEMAP--HLGGIATLIVRVFEQRRFVAPLECAAVAVDVFGKGDGSNASNDEQIVGSFRGLMGALSQSAFQFFTTHSL-ADSPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACVGNQD--RASANAVLMFLTYLLNESTTKLAAFMPTIYASVLDAGQTEKWLDGVVGALAAKSPSVLFDPVARLFFALLSSFAD 847 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15985.4386.1 >prot_Ecto-sp13_S_contig15985.4386.1 ID=prot_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHback to top mRNA from alignment at Ecto-sp13_S_contig15985:1773..3326- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15985.4386.1 ID=mRNA_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15985:1773..3326- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15985:1773..3326- >mRNA_Ecto-sp13_S_contig15985.4386.1 ID=mRNA_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15985:1773..3326- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |