mRNA_Ecto-sp13_S_contig15985.4386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15985.4386.1
Unique NamemRNA_Ecto-sp13_S_contig15985.4386.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 5.340e-141
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 1
Query:    1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
            ISTELVRTLWPMLEAVPGRMG SPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGS DEA+EHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFL+FCP GLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLR FSE
Sbjct:  859 ISTELVRTLWPMLEAVPGRMGGSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSTDEAMEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLIFCPAGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRTFSE 1091          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A835YMS8_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.640e-54
Identity = 118/235 (50.21%), Postives = 150/235 (63.83%), Query Frame = 1
Query:   10 ELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVY-GSADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACV------GAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAF 693
            EL+++L P+++AV GR   S EVM QLFLLVGK L+SLR + A Q HIP  L +++D      YPCCL+ M TAVEVY G + + VEHF  LL R    TFT  Q    PG  PQLV ++F L +R+LLF P  LL   +L T L LAVAC+           ERESARAV +F+G LA RC G+LD Y  +++A L   G AL RL+   LA A+PS+LWPNLID L+A+L  +
Sbjct:  761 ELLQSLRPLVDAVAGRCQGSEEVMAQLFLLVGKALSSLRSLPALQAHIPAFLNIMLD-----HYPCCLECMGTAVEVYSGESAQVVEHFGQLLARVCAETFTYFQGR-HPGAEPQLVAAFFTLAYRYLLFAPAALLQGRDLATILDLAVACLDVGGGGSGTTQERESARAVAIFVGHLAQRCSGKLDAYSQQIDAVLVDRGGALVRLILVGLARAAPSMLWPNLIDCLHAILHQY 989          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A5D6XHI0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHI0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.060e-27
Identity = 89/244 (36.48%), Postives = 131/244 (53.69%), Query Frame = 1
Query:    1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG------SADEA-----VEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
            +++ +V+ +WP LE V  R+     VM  LF L G  L SLR  +A Q+ +  +   I+  +D HQ+   L+    AV+V+G      S D +     V  FR LLG  S   F      A  G+ P ++R+++EL +RF+LFCP  +L S++L   + L +ACVG  D  R S  AVLVFL  L     G+L  ++ +V AA+ PH       + AALA  SPS+L+  L   L+ALL  F++
Sbjct:  803 VTSSVVQHVWPHLEPVVPRLRAHEPVMDALFQLYGWCLQSLREEMASQLDV--IADAIVHVFDAHQFVAPLECAAVAVDVFGKRGGSDSGDASLSPAVVSSFRELLGLLSCTAFRFFTTHAL-GDAPDVLRAFYELAYRFVLFCPAAVLLSSDLPVLIELGLACVGNQD--RASTNAVLVFLTFLLAESRGKLAPFQAQVGAAVLPHVAEWVDALVAALAAKSPSILFDALGRLLFALLSNFAD 1041          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: G4ZGJ0_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZGJ0_PHYSP)

HSP 1 Score: 107 bits (266), Expect = 6.880e-23
Identity = 83/238 (34.87%), Postives = 129/238 (54.20%), Query Frame = 1
Query:    1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQV-HIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
            ++T  V+ +WP L+ +  R       M  LF L G  L SLR  +A Q+ +I TL   I+  ++E +Y   L+  + AV+V+G  ++ E VE FR L+G  S   F      +   E P+++RS+FEL +RFLLFCP  +L + E    + L++AC+G  D  R S  AV++FL  L      +L  +   + A++   G+    L  +  ALA  SPS L+ +L   LYALL +F++
Sbjct:  709 VTTWAVQLIWPHLDPITPRFEADEAAMTALFELYGWCLQSLRQEMAPQLGNIATL---IVKVFEERRYVAPLECASVAVDVFGKDASAEIVESFRGLMGALSQSAFQFFTTHSL-AESPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACLGNQD--RPSTNAVIMFLTYLLNESTFKLAVFTAVINASVLDAGQTEKWLDSLVGALASKSPSGLFESLGKLLYALLTSFAD 940          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A8K1FCT5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCT5_PYTOL)

HSP 1 Score: 106 bits (264), Expect = 1.260e-22
Identity = 77/223 (34.53%), Postives = 121/223 (54.26%), Query Frame = 1
Query:   13 LVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADE----AVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLM---FAALAGASPSLLWPNL 660
            +V T+WP LE V  R+     VM  LF L G  L SLR  +A Q+  P +  +I+  +++H +   L+  + AV+V+G   E     +E FR L+G  S   F    +    G+ P L+R+++EL +RFLL+CP  ++ ++E    L L+ ACVG  D  R S  AV+VF+  L     G+L R++GE++  +      L + +    +ALA  SPS+L+  L
Sbjct:  661 VVETIWPHLELVSTRLSAHEAVMNALFELHGWCLRSLREEMAPQL--PLVATLIVSVFEQHFFVSSLECASIAVDVFGRTAEQDAAVLESFRGLMGMLSRVAFQFFTSRG-VGDAPDLLRAFYELGYRFLLYCPAAVVTASEFPVLLDLSRACVGNQD--RVSTNAVVVFVSYLLTESRGKLQRFQGEIDRFVWGDATVLEQWLDTVLSALASQSPSVLYDTL 878          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: K3XCD1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCD1_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 2.690e-21
Identity = 73/240 (30.42%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADEAVEH----FRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLM---FAALAGASPSLLWPNLIDALYALLRAFSE 699
            +++  V+ +WP LE +  R+     VM  LF   G  L SLR  +A Q+   ++  +I+  +++HQ+   L   + AV+++G   +A E     FR L+G  S  +F      +  G+ P ++RS++EL +RFLLFCP  ++ S+E    + L++AC+G  D  R S  AVL+FL  L     G+L  ++  ++  +      L + +    +ALA  SP++L+ ++    +A+L  F+E
Sbjct:  660 VTSSAVQHIWPHLEPIAPRLSHHEAVMDALFQFYGWCLQSLRDDMASQLG--SIASLIVHVFEKHQFVSPLGCASVAVDIFGKTADANEQVLTSFRELMGMLSRTSFQFFTTHSL-GDAPDVLRSFYELAYRFLLFCPAAVITSSEFPVLIELSLACLGNQD--RGSTNAVLMFLTFLVNESRGKLAHFQASIDDCVLGQQGQLEKWIDGILSALATKSPNILFDSMGKLFFAVLSTFAE 894          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A0W8CLQ1_PHYNI (Eukaryotic translation initiation factor 6 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CLQ1_PHYNI)

HSP 1 Score: 101 bits (252), Expect = 4.820e-21
Identity = 80/233 (34.33%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
            V+ +WP L+ +  R  T   VM  LF L G  L SLR  +A ++  I TL   I+  +++ ++   L+  + AV+V+G  ++ + VE FR L+G  S   F      +   E P ++RS+FEL +RFLLFCP  LL++ E    + LA+AC+G  D  R S  AV++FL  L      +L  +   + A++   G+    L  +  ALA  SPS L+  L    Y+LL +F++
Sbjct:  557 VQQIWPHLDPITPRFETYEVVMTALFELYGWCLQSLRQEMASELGGIATL---ILRVFEQRRFVAPLECASVAVDVFGKDASADIVESFRGLMGALSQSAFQFFTTHSL-AESPDVLRSFFELAYRFLLFCPAALLSAPEFPVLIDLALACLGNQD--RPSTNAVVMFLTYLLNESTIKLASFTATINASVLDAGQTEKWLDSLIGALASKSPSALYDALSKLFYSLLTSFAD 783          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: D0NLI9_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLI9_PHYIT)

HSP 1 Score: 101 bits (251), Expect = 6.730e-21
Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG--SADEAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
            V+ +WP L+ +  R+     VM  LF L G  L SLR  +A ++  I TL   I+  +++ ++   L+  + AV+V+G  ++ E VE FR L+G  S   F      +   E P ++RS+FEL +RFLLFCP  LL++ E    + L +AC+G  D  R S  AVL+FL  L      +L  +   + A++   G+    L  +  ALA  SPS L+ +L   LY LL +F++
Sbjct:  677 VQQIWPHLDPITPRLEAYEAVMVALFELYGWCLQSLRQEMAPELGGIATL---ILRVFEQRRFVAPLECASVAVDVFGKDASAEIVESFRGLMGALSQSAFHFFTTHSL-AESPDVLRSFFELAYRFLLFCPAALLSAPEFPVLIGLGLACLGNQD--RPSTNAVLMFLTFLLNESTIKLASFTATINASVLDAGQTEKWLDSLIEALASKSPSALYDSLSKLLYTLLASFAD 903          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A3R7H5D9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5D9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.060e-19
Identity = 83/240 (34.58%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH-IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYG---SAD-EAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHG--EALTRLMFAALAGASPSLLWPNLIDALYALLRAFSE 699
            I+   V+ +WP L  +  R+     VM  LF L G  L SL+  +A Q+  I TL   I+  ++E ++   L+    AV+V+G   SAD + V+ FR L+G  S   F      +   E P+++RS+FEL +RFLLFCP  +L + E    + L++ACVG  D  R S  AVL+FL  L      +L  +   + A++   G  E     + +ALA  SPS+L+  +   L+ALL +F +
Sbjct:  674 ITAWAVQLIWPHLNVLVLRLEADEAVMAALFQLYGWCLQSLQQEMAPQLGGIATL---IVKVFEERRFVAPLECAAVAVDVFGKGGSADPQIVDSFRGLMGALSQSAFQFFTTHSL-AEAPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACVGNQD--RTSTNAVLMFLTFLLNESTIKLAAFTPIINASVLDAGQTEKWFENLVSALALKSPSVLYDAIAKLLFALLSSFPD 907          
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Match: A0A662XYV5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYV5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-19
Identity = 75/238 (31.51%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   16 VRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSAD--------EAVEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRL--MFAALAGASPSLLWPNLIDALYALLRAFSE 699
            V+ +WP L+ +  R+ +    M  LF L G  L SLR  +A   H+  +  +I+  +++ ++   L+    AV+V+G  D        + V  FR L+G  S   F      +   + P+++RS+FEL +RFLLFCP  +L + E    + L++ACVG  D  R SA AVL+FL  L      +L  +   + A++   G+    L  +  ALA  SPS+L+  +    +ALL +F++
Sbjct:  615 VQLIWPHLDLLVPRLESDEAAMTALFQLYGWCLQSLRQEMAP--HLGGIATLIVRVFEQRRFVAPLECAAVAVDVFGKGDGSNASNDEQIVGSFRGLMGALSQSAFQFFTTHSL-ADSPEVLRSFFELAYRFLLFCPAAVLTAAEFPVLIELSLACVGNQD--RASANAVLMFLTYLLNESTTKLAAFMPTIYASVLDAGQTEKWLDGVVGALAAKSPSVLFDPVARLFFALLSSFAD 847          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15985.4386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY0_9PHAE5.340e-14197.42Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YMS8_9STRA1.640e-5450.21Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A5D6XHI0_9STRA7.060e-2736.48Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4ZGJ0_PHYSP6.880e-2334.87Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8K1FCT5_PYTOL1.260e-2234.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XCD1_GLOUD2.690e-2130.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0W8CLQ1_PHYNI4.820e-2134.33Eukaryotic translation initiation factor 6 n=12 Ta... [more]
D0NLI9_PHYIT6.730e-2134.76Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A3R7H5D9_9STRA1.060e-1934.58Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A662XYV5_9STRA1.410e-1931.51Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15985contigEcto-sp13_S_contig15985:1773..3326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score346.3
Seed ortholog evalue1.1e-92
Seed eggNOG ortholog2880.D8LBP4
Preferred nameIPO13
Model size699
KEGG koko:K15436
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0008104,GO:0008134,GO:0008139,GO:0008150,GO:0008565,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0023051,GO:0023052,GO:0031074,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0035257,GO:0035258,GO:0035259,GO:0038023,GO:0040011,GO:0042277,GO:0042330,GO:0042331,GO:0042564,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0098916,GO:0099177,GO:0099536,GO:0099537
Exons3
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2022@1,KOG2022@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-27_003220.1
Cds size699
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.5655656-CDS-Ecto-sp13_S_contig15985:1772..18441681462844.5655656-CDS-Ecto-sp13_S_contig15985:1772..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15985 1773..1844 -
1681462844.5781624-CDS-Ecto-sp13_S_contig15985:2050..23561681462844.5781624-CDS-Ecto-sp13_S_contig15985:2050..2356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15985 2051..2356 -
1681462844.58812-CDS-Ecto-sp13_S_contig15985:3005..33261681462844.58812-CDS-Ecto-sp13_S_contig15985:3005..3326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15985 3006..3326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15985.4386.1prot_Ecto-sp13_S_contig15985.4386.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15985 1773..3326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15985.4386.1

>prot_Ecto-sp13_S_contig15985.4386.1 ID=prot_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
ISTELVRTLWPMLEAVPGRMGTSPEVMRQLFLLVGKLLTSLRMVLARQVH
IPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSADEAVEHFRALLGRAST
RTFTVVQAAARPGEVPQLVRSYFELLFRFLLFCPEGLLASTELDTALRLA
VACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEAL
TRLMFAALAGASPSLLWPNLIDALYALLRAFSE
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mRNA from alignment at Ecto-sp13_S_contig15985:1773..3326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15985.4386.1 ID=mRNA_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15985:1773..3326- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCGACGGAGCTCGTCCGCACGCTGTGGCCGATGCTGGAGGCCGTGCC TGGGCGGATGGGCACCAGCCCGGAGGTGATGCGGCAGCTCTTCCTCCTGG TGGGGAAGCTCCTGACCTCGCTGAGGATGGTCCTCGCCCGGCAAGTGCAC ATCCCGACCCTCCTGAAGATGATTATGGACTCGTACGACGAGCACCAGTA CCCGTGCTGCCTGGACATTATGACGACGGCCGTAGAGGTGTACGGGTCCG CGGACGAGGCGGTAGAGCACTTCCGCGCCCTCCTGGGCAGGGCGTCGACG CGGACCTTTACGGTTGTGCAGGTAGGTGTCTTTATTTATTTGCAACATCG ACCGCGTAACCGCCTAACCGCCTTACCACCGAAAATATGTCAGTCTTGTA GCGGAATAAAAACCATCAACAACTTCTAAGTCAGGATTCTACGGACGAGG GGGGCGCAGGAGTTGGACGACGGAGTGTGCGTTTACGTGTGTGTGTGTTT CTTATTAGCATCGTGCGCTAACGGGCTGACCAATGAAAATGCGTGAGTGT CAGTGTGTATGTTTGTGTCGTTGATAGCGTCGACTGCACCACCCGGCCAA CCGACAATAATACCCCAGTCTCACAGCGAATTGGAAGACACAAACACGCT TTTATAGTTATCGTGCATGTCGTCCCATCTACTTCACTCCGGGTGTCAGT TGACGTCTTTCGTCTTGCTGTGCTCATCAGTCTCGGGGTCGTACAGGAGG AGAGGACACACGGAAGATTGTCTGTGTGGTACGTACAGGTGTGCGTGCGT GCGTGCGTGCTTCATGAGCTATCACGAGCTTCTTGTCTTACCTTTTTGTT TTGGCGAATATACCAGCGTTTGCTTGTTTTCGATCCGTGCTTTCCCTCCA TCACCCTCAACTTGCGACCCCCCTCCCCCCCCGCCATCGCGCGCCCCTGC TCCAAAACAAAATGAAAAAGGCGGCCGCAAGACCCGGAGAAGTCCCACAG CTGGTGCGCTCGTACTTCGAGCTGCTGTTCCGCTTCCTGCTTTTCTGCCC GGAGGGACTGCTCGCTTCCACCGAGCTCGACACCGCCCTCCGGCTCGCCG TGGCCTGCGTCGGCGCTGCGGATCTGGAGCGAGAGTCGGCGAGAGCGGTG CTGGTGTTTCTCGGCCAGCTTGCCGGGCGCTGCGGCGGGCAGCTTGACCG GTACAAAGGGGAGGTGGAGGCGGCGCTGGCCCCGCACGGGGAGGCGCTGA CGCGGCTCATGTTCGCGGCGCTTGCGGTGAGCGAGAGGGGAGAGAGGGCG CAAAGGGGGGGGGTAGGCGAGGGGGTTAAAAGAACAAGGGAGTGAAAAAC ACACGAGCACGCTGCTGCTTCCGCTTGGGTCCTCTGTGCGTCGAAACGTC GAAAAAAAGATTTTTTTCTCTCATATTTTTCGTCGTGATGTATACCGGTG CCGTCATCGTCGCCTCCTCGTGCAACTTGCAGGGTGCCTCGCCCTCCCTG CTGTGGCCCAACCTCATCGACGCTTTGTACGCCTTGCTGAGGGCCTTCTC GGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15985:1773..3326-

>mRNA_Ecto-sp13_S_contig15985.4386.1 ID=mRNA_Ecto-sp13_S_contig15985.4386.1|Name=mRNA_Ecto-sp13_S_contig15985.4386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15985:1773..3326- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCGACGGAGCTCGTCCGCACGCTGTGGCCGATGCTGGAGGCCGTGCC
TGGGCGGATGGGCACCAGCCCGGAGGTGATGCGGCAGCTCTTCCTCCTGG
TGGGGAAGCTCCTGACCTCGCTGAGGATGGTCCTCGCCCGGCAAGTGCAC
ATCCCGACCCTCCTGAAGATGATTATGGACTCGTACGACGAGCACCAGTA
CCCGTGCTGCCTGGACATTATGACGACGGCCGTAGAGGTGTACGGGTCCG
CGGACGAGGCGGTAGAGCACTTCCGCGCCCTCCTGGGCAGGGCGTCGACG
CGGACCTTTACGGTTGTGCAGGCGGCCGCAAGACCCGGAGAAGTCCCACA
GCTGGTGCGCTCGTACTTCGAGCTGCTGTTCCGCTTCCTGCTTTTCTGCC
CGGAGGGACTGCTCGCTTCCACCGAGCTCGACACCGCCCTCCGGCTCGCC
GTGGCCTGCGTCGGCGCTGCGGATCTGGAGCGAGAGTCGGCGAGAGCGGT
GCTGGTGTTTCTCGGCCAGCTTGCCGGGCGCTGCGGCGGGCAGCTTGACC
GGTACAAAGGGGAGGTGGAGGCGGCGCTGGCCCCGCACGGGGAGGCGCTG
ACGCGGCTCATGTTCGCGGCGCTTGCGGGTGCCTCGCCCTCCCTGCTGTG
GCCCAACCTCATCGACGCTTTGTACGCCTTGCTGAGGGCCTTCTCGGAG
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