mRNA_Ecto-sp13_S_contig15981.4384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15981.4384.1
Unique NamemRNA_Ecto-sp13_S_contig15981.4384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: D7FM38_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM38_ECTSI)

HSP 1 Score: 521 bits (1343), Expect = 1.990e-186
Identity = 257/273 (94.14%), Postives = 265/273 (97.07%), Query Frame = 1
Query:    1 GTAFGMALSAVLRSKYTASK--TGQQREAVRPKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVRMVHKEARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPRDSVLRGL 813
            GTAFGMALSAVLRSKYTASK    QQREAVRPKVICFGDSLTQ+GFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWL+PLMDRLFVP GNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLK MAAHVR VHKEAR+MLITPPPIHE KWMEHRQFQAR+MDRKQEATMSYA+ACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGG+VS+QAPHFSEVDP+NPRDSVLRGL
Sbjct:   18 GTAFGMALSAVLRSKYTASKGVKKQQREAVRPKVICFGDSLTQFGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLMPLMDRLFVPGGNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKLMAAHVRTVHKEARLMLITPPPIHERKWMEHRQFQARDMDRKQEATMSYAVACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGVVSMQAPHFSEVDPTNPRDSVLRGL 290          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A836CKV6_9STRA (SGNH hydrolase-type esterase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.180e-58
Identity = 107/278 (38.49%), Postives = 154/278 (55.40%), Query Frame = 1
Query:   31 VLRSKYTASKTGQQREAVRPKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVRMVHKEA-----------------RVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPRDSVLRGL 813
            +L  K    +     E+  P++I FGDS+TQYGFDAE++GWL+           V N      + R  + ++DRLF      P  LVT+FLG ND VLPG  Q+VPL EY+ N+  +  H+R  + +A                 +++LI P P+H  KW  HR  Q R +DR QE T+ YA AC  + +++G   VD +  +GSG ++ AD+YLHDG+H +AEGN  LF  ++  I A++P L PDT      + +QAP    VD  +P +S+LR L
Sbjct:   26 ILNKKLRQHERDDGAESAPPRMIAFGDSVTQYGFDAEKMGWLA----------QVCN-----VHLRLHVIMLDRLFKAGAAQPTALVTVFLGINDAVLPGEKQHVPLPEYRANMNAIVNHLRTAYPDAAKRLMVPSQCPSAPFCVQLVLIAPAPVHLGKWEAHRAKQGRPLDRSQEHTLQYARACLALARDMGVPAVDLHTALGSGDQELADKYLHDGLHLSAEGNAVLFTELQRTILAAYPHLDPDT------MKMQAPWHGHVDEDSPEESILRDL 282          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: K8Z6E0_NANGC (Isoamyl acetate-hydrolyzing esterase 1-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z6E0_NANGC)

HSP 1 Score: 180 bits (457), Expect = 2.670e-51
Identity = 96/237 (40.51%), Postives = 144/237 (60.76%), Query Frame = 1
Query:   85 RPKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNTPVK---LVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVRMVHKE----ARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEV 774
            RPK++ FGDSLTQ GF+    GW + LAH + RR D+VNRGFSGY T+W   +  RLF P+G+   +   L  +FLGAND  LP   Q+VP+ EY+++L+ + +H++   +E     RV+L+TPPP+ E++W  H Q + R +DRK E T  YA A   V +E+   VVD +R +G  + +A    L DG+H +A+G+  ++E V   I  ++P+L P        + +QAP   E+
Sbjct:  110 RPKILLFGDSLTQRGFEGPGQGWAAGLAHAYGRRADIVNRGFSGYTTKWCALMAPRLF-PAGDPAWEVPALAIVFLGANDAALPSREQHVPVHEYEQHLRRIVSHLQGRRREDGSATRVLLLTPPPVDEARWEVHCQSRGRPLDRKNEVTRLYARASKGVAREMQVPVVDLWRRLGGRSPEAVAPNLGDGLHLSAQGSVLVYEAVLTAIEENYPDLAPS------QLPMQAPEHFEL 339          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A0L0HIV6_SPIPD (SGNH_hydro domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HIV6_SPIPD)

HSP 1 Score: 172 bits (437), Expect = 2.200e-49
Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1
Query:   55 SKTGQQREAVRPKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRW----LLPLMDRLFVPSGNTPVKLVTIFLGANDCVLP-GNAQYVPLQEYKENLKFMAAHVRMVHKEARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRL-MGSGA---EDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDT 723
            S+T   R     +++ FGDSLTQ+ F+ E  GW + L++ + R+ DVVNRGFSGYNT W    + P++ R  +PS    ++LVT+FLGAND  LP    Q+VPL  Y++NL  + A +R      R++LITPPPIHE KW +H   + R ++     T+ Y  AC EV +E    ++D + +  G GA   E+ AD  L DGVH    GNR L   V A+I   +P+L P+T
Sbjct:    6 SETDTLRAIHLDQILLFGDSLTQWSFNPEIEGWGAFLSNSYVRKLDVVNRGFSGYNTEWCKHIIAPIL-RTVLPSPGAQIRLVTVFLGANDATLPFWPQQHVPLSAYRDNLHSIIASIRNFSSNTRILLITPPPIHEGKWQKHCGQKGRSINLSVSNTLQYRNACIEVAREAKVPLLDTWEVYFGEGATYNEEKADAVLSDGVHLANLGNRLLGHAVLAKILTEWPDLAPET 236          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: UPI001ABE0209 (isoamyl acetate-hydrolyzing esterase 1 homolog n=6 Tax=Bufo TaxID=8383 RepID=UPI001ABE0209)

HSP 1 Score: 168 bits (425), Expect = 8.990e-48
Identity = 99/249 (39.76%), Postives = 146/249 (58.63%), Query Frame = 1
Query:   88 PKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGN----TPVKLVTIFLGANDCVL--PGNAQYVPLQEYKENLKFMAAHVRMVH-KEARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPRDSVLRGL 813
            P+V+ FGDS+TQ+ F+    GW + LA+   R+ DV+NRG SGYNTRW   ++ +L +P G       +  VTIF GAND  +      Q+VPL+EY ENL+ M  +++ V+ KE +++LI PPPIHE  W +H   +  +++R    T +YA ACA+VG E GA VVD + LM  G  D    YL DG+H + EGN+ L             +L P  E++ G +    P++++VD +NP  S+ + L
Sbjct:    5 PRVLLFGDSITQFAFETN--GWGATLANKLVRKCDVLNRGLSGYNTRWAKQILPKL-IPDGARASAADIAAVTIFFGANDSSIREQNPQQHVPLEEYAENLRSMVQYLKSVNIKEEKIVLIAPPPIHEPSWEKHCFMKGYKLNRLNAVTEAYARACAQVGNEYGADVVDLWTLMQEGGSDYT-VYLSDGLHLSEEGNQFLES-----------KLWPLLEKKLGTLPFILPYWNDVDNNNPESSLFQNL 238          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A7S4M5V7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M5V7_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.360e-46
Identity = 85/223 (38.12%), Postives = 134/223 (60.09%), Query Frame = 1
Query:   82 VRPKVICFGDSLTQYGFDAE-RLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNTPVK---LVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVRMVHK------EARVMLITPPPIHESKWMEHRQFQAREMD-RKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVP 717
            +R K++ FGDS+TQ+GF A+   GW+S+LA+ + RR DV+NRGFSGYNTR  L ++  +    G +  +     T+F GAND  LPG  Q+VP++EY EN++ +  ++R   K      +  ++LITPPP+H+  W        R+   R  EA+ +Y  A   VG E+G  ++D Y L+  G +   +++L DG+H    GN  +++G+   IRA++P+L P
Sbjct:    1 MRSKILLFGDSITQFGFGADGAFGWVSMLANAYTRRADVLNRGFSGYNTRHALDVLPSVLGEDGKSSGRDTIFCTVFFGANDAALPGTRQHVPIEEYSENIRLVVGNMRANLKGSVDGDDVPIILITPPPVHDKGWERWCTEMGRDKSQRSNEASRAYGEALKSVGTELGCSILDTYSLL-EGDKPGFEKHLTDGLHLNGSGNEVIYDGLMNMIRANYPDLAP 222          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: Q5KCM4_CRYNJ (SGNH_hydro domain-containing protein n=6 Tax=Cryptococcus TaxID=5206 RepID=Q5KCM4_CRYNJ)

HSP 1 Score: 165 bits (417), Expect = 5.230e-46
Identity = 101/260 (38.85%), Postives = 147/260 (56.54%), Query Frame = 1
Query:   94 VICFGDSLTQY---GFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPS------GNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVR-----MVHKEARVMLITPPPIHESKWMEHRQFQAR---------EMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADE----YLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPR 792
            V+ FGDSLTQ    G  A+R+      + ++ RR DV+NRGF GYN+ W +P+ +++F         G   VKL+TI+LGAND  LP + Q+VPL +YK N+K +   +R        +E R++LI+PPPI E+ W+E R  + +         E +R  E T  YA  C EVG E+G  VVD +  +   A    DE    Y +DG+H T+EG   LF+ V   I A++PEL P+T      + ++ PH+++VD  NPR
Sbjct:   28 VMLFGDSLTQAWSAGSFAQRM------SEFYLRRADVINRGFGGYNSEWAIPVFEQVFATKKDREQGGIQQVKLITIWLGANDACLPSSPQHVPLDKYKSNVKHIVNLIRDPSSPYHSQETRIVLISPPPIIETAWIESRLEKWKSFGCEGPEPEQNRDAEVTKQYAEGCKEVGAELGVPVVDFWTAVVEAAGGEKDEQLAPYFYDGLHLTSEGYAVLFKAVSGLILATYPELNPET------MPMRMPHWADVDTENPR 275          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A397VC46_9GLOM (SGNH hydrolase n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VC46_9GLOM)

HSP 1 Score: 161 bits (407), Expect = 6.090e-45
Identity = 90/249 (36.14%), Postives = 142/249 (57.03%), Query Frame = 1
Query:   91 KVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRW---LLP-LMDRLFVPSGNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVR-----MVHKEARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPRDSVLRG 810
            +++ FGDS+TQYG D E  GW++ L   + R+ +V+NRGFSGYNT W   LLP L+ + + PS    + L+ IF GAND V+  + Q+V + +YKENL +M   ++       + E +++LITPPP+ E+ W E    +  EM+RK + T  YA  C E   E+   VV+ ++++         +YL DG+H  + GN+ LF  V   I++S+P++ P+       V    P++ +VDP     S+  G
Sbjct:    7 QIVLFGDSITQYGHDPETNGWVAALQSSYVRKLEVLNRGFSGYNTEWAKILLPQLLPKNYSPSNFPKIILLIIFFGANDAVIESSIQHVNIDKYKENLIYMVNLIKNPTSPYYNPETKILLITPPPMDENSWEETCASKGDEMNRKADITKKYAEVCVETALELNVPVVNLWKIINDHV--TVKDYLSDGLHLNSLGNKTLFISVMDVIKSSWPDIDPEN------VQDLFPNWRDVDPKILESSLKLG 247          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A388LUK5_CHABU (SGNH_hydro domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LUK5_CHABU)

HSP 1 Score: 160 bits (405), Expect = 2.530e-44
Identity = 98/254 (38.58%), Postives = 146/254 (57.48%), Query Frame = 1
Query:   85 RPKVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNT-----------PVKLVTIFLGANDCVLPGNA---QYVPLQEYKENLKFMAAHVRMVHKEARVMLITPPPIHESKWMEH-RQFQAREMD---RKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEI----RASFPELVPDTEEEGGMVSIQAPHFSEVDP 780
            RPK+I FGDSLT++ F  +R GW +LLA  + R+ DVVNRG+SGYNT W L L+D+LF P  +T           P ++VT+F GAND V+   A    +VPL+EY++NL  +  H++ V K   V+LI PPP+     + H R+    ++D   R  E+   YA AC +VG+E+G  V+D +++M  G  D    YL DG+HF+ EGN  +F+ +   +    R+    LV +       + +  P F ++DP
Sbjct:   22 RPKIILFGDSLTEWAF--QRTGWGALLADRYARKADVVNRGYSGYNTCWALHLLDKLF-PKKDTSSPPPPLGPPQPREMVTVFFGANDAVVENGAAAKHHVPLEEYRQNLSTIVQHLQKVSKSTFVVLIAPPPVDSVAHLNHCRRELGTDLDDCGRSNESVGLYAEACVQVGREMGVPVIDLWKMMQEGGGDWK-RYLCDGLHFSEEGNAFVFDALMRVVEEHGRSGEESLVAEE------MPMDYPSFEDIDP 265          
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Match: A0A167JE47_PHYB8 (SGNH_hydro domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167JE47_PHYB8)

HSP 1 Score: 158 bits (400), Expect = 7.360e-44
Identity = 93/249 (37.35%), Postives = 146/249 (58.63%), Query Frame = 1
Query:   91 KVICFGDSLTQYGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLLPLMDRLF--VPSGNTPVK--LVTIFLGANDCVLPGNAQYVPLQEYKENLKFMAAHVRM-----VHKEARVMLITPPPIHESKWMEHRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAY-RLMGSGAEDAAD--EYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHFSEVDPSNPRDSV 801
            K++ FGDS+TQ+ FD    G+ + +A+ ++R+ DV+NRGFSGYNT W +P++ +L   V     P K  L+TIF GAND  LP + Q+VPL++YK+NL+ + + VR       +   R++LITPPPI+E +W    +    ++DRK E T  YA     VGKE    V++ +  ++    E   D  ++L DG+H ++ GN+  +E     I   FPEL PD       + ++ P+F ++DP N  D++
Sbjct:    7 KIVLFGDSITQFSFDPLFQGFGASIANAYQRKIDVMNRGFSGYNTTWAIPILRQLLPTVEQQKQPAKIQLLTIFFGANDGALPISFQHVPLEKYKKNLEELISMVRSPSSPYYNPSLRLVLITPPPINEVQWKVVCEENGIQLDRKFETTRLYAECARNVGKEHKIPVINLWDEILDRAKEQNRDLSQFLSDGLHLSSLGNQTAYELFMEVINTHFPELHPDA------LEMELPYFRDIDPKNYLDAL 249          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15981.4384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM38_ECTSI1.990e-18694.14SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CKV6_9STRA2.180e-5838.49SGNH hydrolase-type esterase domain-containing pro... [more]
K8Z6E0_NANGC2.670e-5140.51Isoamyl acetate-hydrolyzing esterase 1-like protei... [more]
A0A0L0HIV6_SPIPD2.200e-4941.81SGNH_hydro domain-containing protein n=1 Tax=Spize... [more]
UPI001ABE02098.990e-4839.76isoamyl acetate-hydrolyzing esterase 1 homolog n=6... [more]
A0A7S4M5V7_9STRA4.360e-4638.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
Q5KCM4_CRYNJ5.230e-4638.85SGNH_hydro domain-containing protein n=6 Tax=Crypt... [more]
A0A397VC46_9GLOM6.090e-4536.14SGNH hydrolase n=2 Tax=Gigaspora TaxID=4873 RepID=... [more]
A0A388LUK5_CHABU2.530e-4438.58SGNH_hydro domain-containing protein n=1 Tax=Chara... [more]
A0A167JE47_PHYB87.360e-4437.35SGNH_hydro domain-containing protein n=1 Tax=Phyco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15981contigEcto-sp13_S_contig15981:1..3423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score515.4
Seed ortholog evalue1.6e-143
Seed eggNOG ortholog2880.D7FM38
Model size816
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.lipid catabolic process
EggNOG OGsCOG0214@1,KOG3035@2759
Cds size801
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15981.4384.1prot_Ecto-sp13_S_contig15981.4384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15981 16..3423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.4034352-UTR-Ecto-sp13_S_contig15981:0..151681462844.4034352-UTR-Ecto-sp13_S_contig15981:0..15Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15981 1..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.4148138-CDS-Ecto-sp13_S_contig15981:15..661681462844.4148138-CDS-Ecto-sp13_S_contig15981:15..66Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 16..66 +
1681462844.4246337-CDS-Ecto-sp13_S_contig15981:534..5961681462844.4246337-CDS-Ecto-sp13_S_contig15981:534..596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 535..596 +
1681462844.438251-CDS-Ecto-sp13_S_contig15981:982..11971681462844.438251-CDS-Ecto-sp13_S_contig15981:982..1197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 983..1197 +
1681462844.446354-CDS-Ecto-sp13_S_contig15981:1619..17261681462844.446354-CDS-Ecto-sp13_S_contig15981:1619..1726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 1620..1726 +
1681462844.4552455-CDS-Ecto-sp13_S_contig15981:2550..26401681462844.4552455-CDS-Ecto-sp13_S_contig15981:2550..2640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 2551..2640 +
1681462844.46374-CDS-Ecto-sp13_S_contig15981:3147..34231681462844.46374-CDS-Ecto-sp13_S_contig15981:3147..3423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15981 3148..3423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15981.4384.1

>prot_Ecto-sp13_S_contig15981.4384.1 ID=prot_Ecto-sp13_S_contig15981.4384.1|Name=mRNA_Ecto-sp13_S_contig15981.4384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MALSAVLRSKYTASKTGQQREAVRPKVICFGDSLTQYGFDAERLGWLSLL
AHWWERRFDVVNRGFSGYNTRWLLPLMDRLFVPSGNTPVKLVTIFLGAND
CVLPGNAQYVPLQEYKENLKFMAAHVRMVHKEARVMLITPPPIHESKWME
HRQFQAREMDRKQEATMSYAMACAEVGKEIGAKVVDAYRLMGSGAEDAAD
EYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGMVSIQAPHF
SEVDPSNPRDSVLRGL*
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mRNA from alignment at Ecto-sp13_S_contig15981:1..3423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15981.4384.1 ID=mRNA_Ecto-sp13_S_contig15981.4384.1|Name=mRNA_Ecto-sp13_S_contig15981.4384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15981:1..3423+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACCGCCTTCGGCATGGCACTGTCGGCCGTATTGCGAAGTAAATACAC CGCGTCCAAAACGGGAGTGAAGAAGGCGAGGAATGCTGCTGCTGGTAGCT GTGTGGGCTAGACCCGTAGCTAGTCTATGCCTCTGTCGCTGTTTGTTGGA AGGGTTAGTCGTGTTCAATATTGCTGGGGCGTTGGAGGTAAGCAGTGGAC CAACTATGTAGCACCCTGTTGGCACCCATCGTTCATGTAGAATTTCGCTG TACAGTACATTTCTTTCGTGGACTGGAGTAAATCGCACACGTCTTGATGA CACGATCTTCCTTTTCCACGACTCGCAACCCGACTTCAACATTCTGCAGC TACAACATAGAGTACTGGGTCTATTCGGACTGCGGCTGGCAATAACAACC ATGGACTGCGATAGTCCCTGACTCGCGTTGCCTGTTCACGTTCGGCGAGG TTTTGTGTCTACCGTGTTTCACAGCAAGACTAGCTCACTGTGTGTGCCCA ATCCTCTATCCCCCCCCCCCCGCCAACCTTGCAGCAGCAACGCGAGGCTG TTCGGCCGAAGGTGATTTGCTTCGGGGACAGCCTGACGCAGTACGGGTGA GGCCTTAAATCATATGATGAAGAGCTGACTGTAGAGATTTGCTTTGGATA TCAGTTTCGAGTGCCCCAAGGCGCGAGGCCTTCGTACGATTAACTGCTGT CGCTGGTTGCCTGTACCCCTGGCTTGCAGGATGGAAGCCGTTGGTGAGTT TAGTTCCACAGAAAATGCTGCAATTCATCTTTCTGAGTCGTGTGGTTTCA ACAACTATCGGTGGGTTCTGCGCATGCGTAAGGCCTTCATGTCGGCACGT TCCCCACCTGTGGGGAATCAAGAGCTGCTGTGAAGAGTAAAAGAAGGACG GTGAACGGGTGTGTGGAACACATTTTCCCTCTTGCTTAGTCGTGCATTGT CAAACAACAAACACGTAACCTCGCCACGAAAGGTTTGATGCCGAGAGGTT GGGTTGGTTGTCGCTGCTGGCGCACTGGTGGGAGCGCCGGTTCGACGTGG TCAACCGCGGCTTCAGCGGTTACAACACCCGATGGCTCCTGCCGCTCATG GACCGACTCTTCGTGCCCAGCGGTAACACCCCAGTCAAGCTGGTCACCAT CTTCCTCGGCGCCAACGACTGCGTCCTCCCCGGCAACGCTCAGTACGGTG CGTGTGTGTGTGTCGTGCAGGCGCGTCCGCGTGCTGGAGCGAGCAACCTT GATTGCCACCCCAGGATGAACAAGCGTGGCGACCACTCACTTCGGCAAGC CCACACCCACGCTCACGTTCACCAGGGACACTTTCAGCACCGGACGCGCT CACTCTCCGGCCAAGAGCGTTTTGATTCAGCTTTCGCATTGTACTTGGCG ATCTCCTATCGCCACCTGTGGTCTTGTACGTTGGGGACGTATTTGAAGTC AGTGCCACGAAGAAAAACAACTGCGAGGAGCGGGCGTGTCACCAGAAAGT GAATCCCGTCCATGGGCAAAGCTGTTGACGAAGCAGGTGGTTTATTGGTG CCTGCATGATCCCCACATGTCCCCTGCGTGGCCCCTTTTTGTTCCCTTTC CGCGCACCCCGGGCAACAGTGCCCCTTCAGGAATACAAGGAAAACCTTAA GTTCATGGCGGCGCACGTCCGCATGGTACACAAAGAAGCAAGAGTGATGC TCATCACGCCCCCTCCCATCCACGAGGTGCAATCATCGTTGTTGCAGAAT CATCGTTGTTACTGTGTAGTCGGTGGTGGTGGTGGTGGTGGAGGTGGAGG CGGTTGTTGTTCTGTTGCGCGTTGTTGTAGCTGTGCTGTTGTCGCTGTCG TTTGATGCTTGTTTGTTTTGGTCGCTGGGGATTGTTACTGATGTTGCTGT TGCTGTTGCTGTTGATATCTTCACATTGGAAGTGTTCTGCCCTCTACAGC CGTACAGCGGTACCTCTCCGCACGAAGCCGAACCGATCAGAAAGACGAAA CCCGAGTCCGGTGGTCTATTAGCCCAATACGGCCAAGAAGTACAAGCGCC AAAGGCTCCAACCACGCGCGGGAGATGGCAACAACAGATCAAATCGCCCT CCATCCCTGTAGGGGCTATTTTGAATGTACCCTTCACGAACGACGTTGCC GCAGGAAACCTCGCAAGACGCTTGCCCACGGCGGTAGGGGAAATCCCACA CGCGAGCCACAACTACTTCCGTACACACCCTGTTTTGTGTCCTGTCTGGA AGTTGTTGTTGCTGCTGTTATCGGATCTGTGCTGCTGTTGATTGTGAACG TTTTGTTCAGCAGCTGTGTTGAGCTGTACTGTTGCGGGGGTGTGTGTCCC AAACTACACCATTCTTGGTAGTTTTTTCTGCTTCACCTTGTGATCATGTT TGCATGTTTTGCCCGCTTCGAGTGGTTGCGGCGGCGCACCTCACCTCCTG GCACGTGTTTATTCGACGACCAAGCGATAACGTCCCATCTGTTGCGGAAA CGTGCGGGTTTGTGTGTTTTTGTCGTCCCGCCGCGGCTTGGTTGTCGCAG AGCAAGTGGATGGAGCACAGGCAGTTTCAGGCGAGAGAAATGGACCGCAA GCAGGAGGCCACCATGTCCTACGCTATGGCGTGCGCAGAGGTGTGTATGC TTCTCTCTTTAGTTAGCATCGACCGCACTATTCGACTTCAGCCAGCCATA TGTATGTATTTGGTTGTCCTAAGCATGGTGAGCCTCAAGACGTTTACATC CTCGTGTATGTTCGTCTGTGTCTGGTGTGGTTTGCGTTATTGTGACGCAC CTCACACGCTGGGAGATGCGAACGGGCTCTGTTTTCCCCTTGTGTTGGGG ACTAAAACGAGCGAGGCCAACCGAAGAGCAACAACCCATGAGCCACCATG GCTTGAACACCTAACTCACGAGCAAACACACCACGAGCGAGCAAACGTAA CAGAACACCACCACAGACTCCCCTTCCCCACAAAAATGGTCCGAATGCAA ACCATGAGTACCCCCCCACACACCAAAAAACAACGGGAAACAAGTGGGTA CCACGAACGAGTCAAAAGAGCTGTGGGCACTCATGAGCGTACGCGCGAAC ACACTCACACACACGGCCGCCGCCGCCGCCTCTATAAACAAATTAAGGTG GGCAAGGAGATCGGCGCCAAGGTGGTGGACGCGTACAGACTCATGGGCTC GGGGGCCGAGGACGCCGCGGACGAGTACCTCCACGACGGTGTCCACTTCA CCGCCGAGGGTAACCGCAGGCTCTTCGAGGGGGTCAAGGCGGAGATCCGC GCGTCGTTCCCGGAACTGGTCCCGGACACGGAGGAGGAGGGGGGGATGGT CTCTATTCAGGCCCCCCATTTCTCGGAGGTCGACCCAAGTAACCCGAGAG ACAGCGTGCTTAGGGGTCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15981:1..3423+

>mRNA_Ecto-sp13_S_contig15981.4384.1 ID=mRNA_Ecto-sp13_S_contig15981.4384.1|Name=mRNA_Ecto-sp13_S_contig15981.4384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15981:1..3423+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACTGTCGGCCGTATTGCGAAGTAAATACACCGCGTCCAAAACGGG
ACAGCAACGCGAGGCTGTTCGGCCGAAGGTGATTTGCTTCGGGGACAGCC
TGACGCAGTACGGGTTTGATGCCGAGAGGTTGGGTTGGTTGTCGCTGCTG
GCGCACTGGTGGGAGCGCCGGTTCGACGTGGTCAACCGCGGCTTCAGCGG
TTACAACACCCGATGGCTCCTGCCGCTCATGGACCGACTCTTCGTGCCCA
GCGGTAACACCCCAGTCAAGCTGGTCACCATCTTCCTCGGCGCCAACGAC
TGCGTCCTCCCCGGCAACGCTCAGTACGTGCCCCTTCAGGAATACAAGGA
AAACCTTAAGTTCATGGCGGCGCACGTCCGCATGGTACACAAAGAAGCAA
GAGTGATGCTCATCACGCCCCCTCCCATCCACGAGAGCAAGTGGATGGAG
CACAGGCAGTTTCAGGCGAGAGAAATGGACCGCAAGCAGGAGGCCACCAT
GTCCTACGCTATGGCGTGCGCAGAGGTGGGCAAGGAGATCGGCGCCAAGG
TGGTGGACGCGTACAGACTCATGGGCTCGGGGGCCGAGGACGCCGCGGAC
GAGTACCTCCACGACGGTGTCCACTTCACCGCCGAGGGTAACCGCAGGCT
CTTCGAGGGGGTCAAGGCGGAGATCCGCGCGTCGTTCCCGGAACTGGTCC
CGGACACGGAGGAGGAGGGGGGGATGGTCTCTATTCAGGCCCCCCATTTC
TCGGAGGTCGACCCAAGTAACCCGAGAGACAGCGTGCTTAGGGGTCTGTG
A
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