mRNA_Ecto-sp13_S_contig15962.4377.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15962.4377.1
Unique NamemRNA_Ecto-sp13_S_contig15962.4377.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: D8LH90_ECTSI (Folate-binding protein YgfZ n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH90_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 6.100e-39
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKV 264
            +GCYIGQESISRVNAYNAVSKALYGVSFEDS SP++GTELFVQET K        AGVVTSMLDRDATSHPFGLAYIRTKAGGVGLK+
Sbjct:  384 KGCYIGQESISRVNAYNAVSKALYGVSFEDSTSPEQGTELFVQETGKS-------AGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKL 464          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: A0A6H5JC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC00_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.480e-16
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    5 AATSDKSPSPELMPTTPSVKPSTGCPSRTRRRPKRGQSFSCRRPQRGE 148
            AATSDKSPSPEL PTTPS KPSTGCPSRTR RPKRGQSFSCR+P+RG+
Sbjct:  383 AATSDKSPSPELTPTTPSAKPSTGCPSRTRPRPKRGQSFSCRKPERGD 430          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: A0A352ADM4_9CYAN (Folate-binding protein YgfZ n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352ADM4_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 2.720e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  + + L+GV  E SA P  GT + V          G   G +TS  + +  S PFGLAYIRTKAGG+GLKV+
Sbjct:  243 KGCYIGQETIARLNTYKGIKQKLWGVRLEASAQP--GTAITVD---------GDKVGKLTSFTETE--SSPFGLAYIRTKAGGIGLKVQ 318          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: L8MD78_9CYAN (Folate-binding protein YgfZ n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8MD78_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 1.740e-12
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDS---ASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKV 264
            +GCYIGQE+I+R+N YN V + L+GV F DS   A  ++   +    T + + V     GV+TS     A   PF LAY+RTKAGGVGL V
Sbjct:  221 KGCYIGQETIARLNTYNGVKQKLWGVKFADSDLQAMTEDSLAMGTPITLEDKKV-----GVLTSFA--IANQKPFALAYVRTKAGGVGLSV 304          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: A0A6P0UYW0_9CYAN (Folate-binding protein YgfZ n=3 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0UYW0_9CYAN)

HSP 1 Score: 69.7 bits (169), Expect = 4.870e-12
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  V + L+GV+   SA P  GT +  +         G   G +TS  + D  +  FGL YIRTKAGGVGLKV+
Sbjct:  251 KGCYIGQETIARLNTYKGVKQRLWGVNLNGSAQP--GTVVTSE---------GTKVGTLTSFTNTDQGA--FGLVYIRTKAGGVGLKVQ 326          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: A0A352X9I6_9CYAN (Folate-binding protein YgfZ n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352X9I6_9CYAN)

HSP 1 Score: 69.7 bits (169), Expect = 5.030e-12
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  V + L+G+  +  A P  GT + V +            G +TS+ + D  S  FGLAYIRTKAGG+GLKV+
Sbjct:  258 KGCYIGQETIARLNTYKGVKQRLWGIRLQAPAQP--GTIITVDDDK---------VGKLTSVTETD--SGIFGLAYIRTKAGGIGLKVK 333          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: A0A2W1JWK9_9CYAN (Aminomethyltransferase n=2 Tax=Acaryochloris TaxID=155977 RepID=A0A2W1JWK9_9CYAN)

HSP 1 Score: 69.7 bits (169), Expect = 5.190e-12
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N YN V + L+G+  E+SA P  G  L +++   R+V      G++TS +         GL YI+TKAGG GLKV+
Sbjct:  265 KGCYIGQETIARLNTYNGVKQQLWGIQLEESAEP--GASLLLED---RKV------GILTSQV--QTADGYLGLGYIKTKAGGAGLKVQ 340          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: UPI001ACD07F5 (Folate-binding protein n=1 Tax=Phormidium pseudopriestleyi FRX01 TaxID=1759528 RepID=UPI001ACD07F5)

HSP 1 Score: 67.4 bits (163), Expect = 5.590e-12
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  V   L+GV     ASP  GT + + E            G +TS    D    PFGLAYIRTKAGG GL+V+
Sbjct:   79 KGCYIGQETIARLNTYKGVKVQLWGVKLTAPASP--GTVVTMGEEK---------VGTLTSYT--DTPQGPFGLAYIRTKAGGAGLQVQ 154          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: UPI0019F8076E (Folate-binding protein YgfZ n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019F8076E)

HSP 1 Score: 68.9 bits (167), Expect = 9.010e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  V + L+GV     ASP  GT + V E            G +TS+ + +  +  FGLAYIR+KAGGVGLKVR
Sbjct:  246 KGCYIGQETIARLNTYKGVKQHLWGVRLNAPASP--GTIITVGEEK---------VGTLTSITETE--NGLFGLAYIRSKAGGVGLKVR 321          
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Match: UPI00034A8CA6 (folate-binding protein YgfZ n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034A8CA6)

HSP 1 Score: 68.9 bits (167), Expect = 9.050e-12
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRVVLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVR 267
            +GCYIGQE+I+R+N Y  V + L+GV     ASP  GT + V E            G +TS  + +    PFGLAYIRTKAGG GL+VR
Sbjct:  246 KGCYIGQETIARLNTYKGVKQHLWGVRLSAPASP--GTVVTVGEEK---------VGKLTSYTETER--GPFGLAYIRTKAGGAGLQVR 321          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15962.4377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH90_ECTSI6.100e-3984.09Folate-binding protein YgfZ n=1 Tax=Ectocarpus sil... [more]
A0A6H5JC00_9PHAE1.480e-1687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A352ADM4_9CYAN2.720e-1448.31Folate-binding protein YgfZ n=1 Tax=Cyanobacteria ... [more]
L8MD78_9CYAN1.740e-1246.15Folate-binding protein YgfZ n=1 Tax=Xenococcus sp.... [more]
A0A6P0UYW0_9CYAN4.870e-1246.07Folate-binding protein YgfZ n=3 Tax=Oscillatoriale... [more]
A0A352X9I6_9CYAN5.030e-1244.94Folate-binding protein YgfZ n=1 Tax=Cyanobacteria ... [more]
A0A2W1JWK9_9CYAN5.190e-1243.82Aminomethyltransferase n=2 Tax=Acaryochloris TaxID... [more]
UPI001ACD07F55.590e-1246.07Folate-binding protein n=1 Tax=Phormidium pseudopr... [more]
UPI0019F8076E9.010e-1247.19Folate-binding protein YgfZ n=1 Tax=Oscillatoriace... [more]
UPI00034A8CA69.050e-1247.19folate-binding protein YgfZ n=1 Tax=Oscillatoria s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15962contigEcto-sp13_S_contig15962:3387..3985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.4
Seed ortholog evalue6.6e-33
Seed eggNOG ortholog2880.D8LH90
Model size270
KEGG rclassRC00022,RC00069,RC00183,RC02834
KEGG koko:K00605
KEGG ReactionR01221,R02300,R04125
KEGG Pathwayko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0055114,GO:0071840
Exons2
EggNOG free text desc.aminomethyltransferase activity
EggNOG OGsCOG0404@1,KOG2770@2759
Ec32 ortholog descriptionGlycine cleavage T-protein, C-terminal barrel domain
Ec32 orthologEc-24_001010.1
EC2.1.2.10
Cds size270
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.7592466-CDS-Ecto-sp13_S_contig15962:3386..34921681462843.7592466-CDS-Ecto-sp13_S_contig15962:3386..3492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15962 3387..3492 -
1681462843.7720215-CDS-Ecto-sp13_S_contig15962:3821..39851681462843.7720215-CDS-Ecto-sp13_S_contig15962:3821..3985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15962 3822..3985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15962.4377.1prot_Ecto-sp13_S_contig15962.4377.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15962 3387..3985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15962.4377.1

>prot_Ecto-sp13_S_contig15962.4377.1 ID=prot_Ecto-sp13_S_contig15962.4377.1|Name=mRNA_Ecto-sp13_S_contig15962.4377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
QGCYIGQESISRVNAYNAVSKALYGVSFEDSASPQEGTELFVQETAKRRV
VLGIVAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKVRF
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mRNA from alignment at Ecto-sp13_S_contig15962:3387..3985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15962.4377.1 ID=mRNA_Ecto-sp13_S_contig15962.4377.1|Name=mRNA_Ecto-sp13_S_contig15962.4377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15962:3387..3985- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCTGCTACATCGGACAAGAGTCCATCTCCCGAGTTAATGCCTACAA CGCCGTCAGTAAAGCCCTCTACGGGGTGTCCTTCGAGGACTCGGCGTCGC CCCAAGAGGGGACAGAGCTTTTCGTGCAGGAGACCGCAAAGAGGCGAGTT GTTTTGGGAATCGTGTTGTTCCAGTCACTGCGGTGTTGTTGATTTTTGGC ATCCCAAGACACTATCTGCTTGAGACGCGCGCCCGCGATACTGGATGTTG GGAGTTGTCGTTGTGCAGCGGTTCTCAGCGTGGCGATGAGGTATCTGGGC GGGAATGAGCTCTGGTGATGTATATGTATATATGCCGTTGACCTCGTCTT GTACGCGGCGGGGGCATCCCTAATACCTCTTGTTCGATCCCCATTGGAGT TTGCTCTTGGTCTGAAGGTTCCATGACGCCTGCGTCGGTTGCGACTGACT GTCTTGCTGGCCACATTTTCTGTTTTTCTTTTGTTTGCCTCAGTGCCGGG GTAGTGACCTCCATGTTGGACCGGGACGCAACTTCGCACCCGTTCGGCTT GGCGTACATCAGGACCAAGGCTGGCGGGGTGGGATTGAAGGTACGGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15962:3387..3985-

>mRNA_Ecto-sp13_S_contig15962.4377.1 ID=mRNA_Ecto-sp13_S_contig15962.4377.1|Name=mRNA_Ecto-sp13_S_contig15962.4377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15962:3387..3985- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCTGCTACATCGGACAAGAGTCCATCTCCCGAGTTAATGCCTACAA
CGCCGTCAGTAAAGCCCTCTACGGGGTGTCCTTCGAGGACTCGGCGTCGC
CCCAAGAGGGGACAGAGCTTTTCGTGCAGGAGACCGCAAAGAGGCGAGTT
GTTTTGGGAATCGTTGCCGGGGTAGTGACCTCCATGTTGGACCGGGACGC
AACTTCGCACCCGTTCGGCTTGGCGTACATCAGGACCAAGGCTGGCGGGG
TGGGATTGAAGGTACGGTTT
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