prot_Ecto-sp13_S_contig15951.4368.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15951.4368.1
Unique Nameprot_Ecto-sp13_S_contig15951.4368.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length274
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Match: Q8QKY3_ESV1K (EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKY3_ESV1K)

HSP 1 Score: 431 bits (1109), Expect = 8.890e-151
Identity = 222/279 (79.57%), Postives = 246/279 (88.17%), Query Frame = 0 
Query:    1 MDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFMKAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMYMV-QRRNRNLD------EVVDQPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFCVPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDPLKASEVARDIASRQIYDTLRNQ 272
            MDFLSNIVSSNFGN LLQAGTAMASGKSAGDVAKH VTR QTRRLEEYFM+AAEAYSSGYSTFF+ S  +FGVA IVAL  WTTMY+V Q+RNRNL+           PSKATA+AGSAAFF+AFFSVL+FDVVRRQRTLS FTGTN+F+QYTMFFCVP+GLF+ GL LASPLDLQQSVAAAAV        AKK++FV++ENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKP+LDQ+NY++PDPL A+EVARDIASRQ++DTLRNQ
Sbjct:    9 MDFLSNIVSSNFGNGLLQAGTAMASGKSAGDVAKHVVTRNQTRRLEEYFMQAAEAYSSGYSTFFAFSAARFGVAAIVALVAWTTMYLVVQKRNRNLNLXXXXXXXXXXPSKATAIAGSAAFFSAFFSVLVFDVVRRQRTLSNFTGTNMFMQYTMFFCVPMGLFSAGLTLASPLDLQQSVAAAAVXXXXXXXVAKKLYFVFMENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINYIIPDPLNAAEVARDIASRQVFDTLRNQ 287
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Match: D8LPB6_ECTSI (EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB6_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 4.520e-148
Identity = 220/276 (79.71%), Postives = 245/276 (88.77%), Query Frame = 0 
Query:    1 MDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFMKAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMY-MVQRRNRNLD--EVVDQPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFCVPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDPLKASEVARDIASRQIYDTLRNQV 273
            MDFLSN+V+S FGN LLQAGTA+A+GKSAGDVAKHA+ R QTRRLEEYFMKAAEAYSSGYSTF +L+T KFG A IVAL  WTT Y M QRRNRN D  EVVDQPS ATAVAGSAAFFAAF +VL+FDVVRRQRTLS FTGTN+F+QY MFFCVPLGLF+ GLKLASPLDLQ SVAAAAVI     V AKK++FV++ENDLER+VFT+IANALDACPGPGKAGCNHKHAGYLDAFANMVKP+LDQ+N++LP+ L A+EVARDIASRQ +DTLRNQV
Sbjct:    1 MDFLSNVVTSTFGNGLLQAGTAVATGKSAGDVAKHAMARNQTRRLEEYFMKAAEAYSSGYSTFLALNTAKFGAAAIVALVAWTTTYLMAQRRNRNRDLGEVVDQPSNATAVAGSAAFFAAFVAVLVFDVVRRQRTLSNFTGTNMFMQYAMFFCVPLGLFSAGLKLASPLDLQTSVAAAAVIXXXXXVVAKKLYFVFMENDLERKVFTEIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINFILPNTLDAAEVARDIASRQKFDTLRNQV 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKY3_ESV1K8.890e-15179.57EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPB6_ECTSI4.520e-14879.71EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 161..171
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 195..273
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..194
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..160
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 128..138
NoneNo IPR availableTMHMMTMhelixcoord: 105..127
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 140..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15951contigEcto-sp13_S_contig15951:391..1212 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15951.4368.1mRNA_Ecto-sp13_S_contig15951.4368.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15951 388..1212 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15951.4368.1 ID=prot_Ecto-sp13_S_contig15951.4368.1|Name=mRNA_Ecto-sp13_S_contig15951.4368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFM
KAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMYMVQRRNRNLDEVVD
QPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFC
VPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLER
EVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDP
LKASEVARDIASRQIYDTLRNQV*
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