mRNA_Ecto-sp13_S_contig15951.4368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15951.4368.1
Unique NamemRNA_Ecto-sp13_S_contig15951.4368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Match: Q8QKY3_ESV1K (EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKY3_ESV1K)

HSP 1 Score: 431 bits (1109), Expect = 9.250e-151
Identity = 222/280 (79.29%), Postives = 247/280 (88.21%), Query Frame = 1 
Query:    1 TMDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFMKAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMYMV-QRRNRNLD------EVVDQPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFCVPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDPLKASEVARDIASRQIYDTLRNQ 819
            +MDFLSNIVSSNFGN LLQAGTAMASGKSAGDVAKH VTR QTRRLEEYFM+AAEAYSSGYSTFF+ S  +FGVA IVAL  WTTMY+V Q+RNRNL+           PSKATA+AGSAAFF+AFFSVL+FDVVRRQRTLS FTGTN+F+QYTMFFCVP+GLF+ GL LASPLDLQQSVAAAAV        AKK++FV++ENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKP+LDQ+NY++PDPL A+EVARDIASRQ++DTLRNQ
Sbjct:    8 SMDFLSNIVSSNFGNGLLQAGTAMASGKSAGDVAKHVVTRNQTRRLEEYFMQAAEAYSSGYSTFFAFSAARFGVAAIVALVAWTTMYLVVQKRNRNLNLXXXXXXXXXXPSKATAIAGSAAFFSAFFSVLVFDVVRRQRTLSNFTGTNMFMQYTMFFCVPMGLFSAGLTLASPLDLQQSVAAAAVXXXXXXXVAKKLYFVFMENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINYIIPDPLNAAEVARDIASRQVFDTLRNQ 287
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BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Match: D8LPB6_ECTSI (EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB6_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 6.680e-148
Identity = 220/276 (79.71%), Postives = 245/276 (88.77%), Query Frame = 1 
Query:    4 MDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFMKAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMY-MVQRRNRNLD--EVVDQPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFCVPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDPLKASEVARDIASRQIYDTLRNQV 822
            MDFLSN+V+S FGN LLQAGTA+A+GKSAGDVAKHA+ R QTRRLEEYFMKAAEAYSSGYSTF +L+T KFG A IVAL  WTT Y M QRRNRN D  EVVDQPS ATAVAGSAAFFAAF +VL+FDVVRRQRTLS FTGTN+F+QY MFFCVPLGLF+ GLKLASPLDLQ SVAAAAVI     V AKK++FV++ENDLER+VFT+IANALDACPGPGKAGCNHKHAGYLDAFANMVKP+LDQ+N++LP+ L A+EVARDIASRQ +DTLRNQV
Sbjct:    1 MDFLSNVVTSTFGNGLLQAGTAVATGKSAGDVAKHAMARNQTRRLEEYFMKAAEAYSSGYSTFLALNTAKFGAAAIVALVAWTTTYLMAQRRNRNRDLGEVVDQPSNATAVAGSAAFFAAFVAVLVFDVVRRQRTLSNFTGTNMFMQYAMFFCVPLGLFSAGLKLASPLDLQTSVAAAAVIXXXXXVVAKKLYFVFMENDLERKVFTEIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINFILPNTLDAAEVARDIASRQKFDTLRNQV 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15951.4368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKY3_ESV1K9.250e-15179.29EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPB6_ECTSI6.680e-14879.71EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15951contigEcto-sp13_S_contig15951:388..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-85
Ec32 orthologEc-06_005960.1
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.0968735-UTR-Ecto-sp13_S_contig15951:387..3901681462843.0968735-UTR-Ecto-sp13_S_contig15951:387..390Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15951 388..390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.107729-CDS-Ecto-sp13_S_contig15951:390..12121681462843.107729-CDS-Ecto-sp13_S_contig15951:390..1212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15951 391..1212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15951.4368.1prot_Ecto-sp13_S_contig15951.4368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15951 391..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15951.4368.1

>prot_Ecto-sp13_S_contig15951.4368.1 ID=prot_Ecto-sp13_S_contig15951.4368.1|Name=mRNA_Ecto-sp13_S_contig15951.4368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MDFLSNIVSSNFGNSLLQAGTAMASGKSAGDVAKHAVTRYQTRRLEEYFM
KAAEAYSSGYSTFFSLSTTKFGVAGIVALAVWTTMYMVQRRNRNLDEVVD
QPSKATAVAGSAAFFAAFFSVLLFDVVRRQRTLSKFTGTNIFVQYTMFFC
VPLGLFATGLKLASPLDLQQSVAAAAVIAVAVVVTAKKIFFVYVENDLER
EVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPHLDQMNYVLPDP
LKASEVARDIASRQIYDTLRNQV*
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mRNA from alignment at Ecto-sp13_S_contig15951:388..1212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15951.4368.1 ID=mRNA_Ecto-sp13_S_contig15951.4368.1|Name=mRNA_Ecto-sp13_S_contig15951.4368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15951:388..1212+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTATGGATTTTTTGTCAAACATCGTCAGTTCAAATTTCGGGAACAGCTT
GTTGCAAGCGGGGACAGCCATGGCTTCCGGGAAATCCGCTGGCGATGTAG
CGAAACACGCGGTGACTCGATATCAGACACGGCGTTTGGAAGAGTATTTC
ATGAAAGCTGCCGAAGCTTACTCGTCAGGATACAGCACATTTTTCTCACT
CAGCACAACAAAGTTTGGGGTGGCAGGAATCGTTGCTTTGGCGGTGTGGA
CAACCATGTACATGGTGCAGAGAAGAAATCGAAATCTCGACGAGGTGGTA
GACCAGCCGTCGAAGGCTACCGCTGTCGCGGGAAGCGCCGCTTTCTTCGC
GGCATTTTTTTCGGTGTTGCTGTTTGACGTCGTCCGCAGACAGCGAACCC
TCTCGAAATTTACCGGCACCAATATCTTTGTGCAGTACACGATGTTCTTC
TGTGTTCCCCTGGGGCTCTTCGCTACCGGACTCAAGTTGGCTTCACCATT
AGATTTGCAACAGAGCGTCGCTGCGGCAGCCGTAATCGCGGTCGCCGTTG
TTGTGACGGCCAAAAAAATATTTTTCGTGTATGTGGAGAACGATCTCGAG
AGAGAAGTTTTTACTCAGATTGCAAACGCCTTGGACGCGTGCCCGGGTCC
GGGCAAGGCCGGCTGCAACCACAAACACGCCGGATACTTGGATGCTTTCG
CGAACATGGTGAAGCCTCACCTCGACCAAATGAATTACGTTCTCCCCGAC
CCGCTCAAAGCATCGGAAGTTGCTCGAGATATCGCTTCCCGCCAGATCTA
TGACACGCTCCGCAATCAAGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15951:388..1212+

>mRNA_Ecto-sp13_S_contig15951.4368.1 ID=mRNA_Ecto-sp13_S_contig15951.4368.1|Name=mRNA_Ecto-sp13_S_contig15951.4368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15951:388..1212+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTTTTGTCAAACATCGTCAGTTCAAATTTCGGGAACAGCTTGTT
GCAAGCGGGGACAGCCATGGCTTCCGGGAAATCCGCTGGCGATGTAGCGA
AACACGCGGTGACTCGATATCAGACACGGCGTTTGGAAGAGTATTTCATG
AAAGCTGCCGAAGCTTACTCGTCAGGATACAGCACATTTTTCTCACTCAG
CACAACAAAGTTTGGGGTGGCAGGAATCGTTGCTTTGGCGGTGTGGACAA
CCATGTACATGGTGCAGAGAAGAAATCGAAATCTCGACGAGGTGGTAGAC
CAGCCGTCGAAGGCTACCGCTGTCGCGGGAAGCGCCGCTTTCTTCGCGGC
ATTTTTTTCGGTGTTGCTGTTTGACGTCGTCCGCAGACAGCGAACCCTCT
CGAAATTTACCGGCACCAATATCTTTGTGCAGTACACGATGTTCTTCTGT
GTTCCCCTGGGGCTCTTCGCTACCGGACTCAAGTTGGCTTCACCATTAGA
TTTGCAACAGAGCGTCGCTGCGGCAGCCGTAATCGCGGTCGCCGTTGTTG
TGACGGCCAAAAAAATATTTTTCGTGTATGTGGAGAACGATCTCGAGAGA
GAAGTTTTTACTCAGATTGCAAACGCCTTGGACGCGTGCCCGGGTCCGGG
CAAGGCCGGCTGCAACCACAAACACGCCGGATACTTGGATGCTTTCGCGA
ACATGGTGAAGCCTCACCTCGACCAAATGAATTACGTTCTCCCCGACCCG
CTCAAAGCATCGGAAGTTGCTCGAGATATCGCTTCCCGCCAGATCTATGA
CACGCTCCGCAATCAAGTGTAG
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