prot_Ecto-sp13_S_contig15939.4360.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15939.4360.1
Unique Nameprot_Ecto-sp13_S_contig15939.4360.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length276
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.440e-74
Identity = 219/256 (85.55%), Postives = 220/256 (85.94%), Query Frame = 0 
Query:    1 MDIYADLPSAKPSADVSVAXXXXXXXXXXXXSKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAASXXXXXXXXXXXXXXXXXXKETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXATIKKIQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGVTPGSPEMP 256
            MDIYADLPSAKPSADV+VA   XXXXXX   SKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAA      XXXXXXXXXXXXX ETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEE        XXXXXXXXXXXX    ATIKKIQEAA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXX LSNLPAWVTKGKG TPGSPEMP
Sbjct:    1 MDIYADLPSAKPSADVAVASAAXXXXXXSPASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSKXXXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIIXXXXXXXXXXXXEERAATIKKIQEAAAKSHEVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEMP 256
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BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.800e-69
Identity = 216/255 (84.71%), Postives = 219/255 (85.88%), Query Frame = 0 
Query:    1 MDIYADLPSAKPSADVSVAXXXXXXXXXXXXSKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAASXXXXXXXXXXXXXXXXXXKETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXATIKKIQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGVTPGSPEM 255
            MDIYADLPSAKPSA+V+VA  XXXXXXXXX SKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPG   AA              XXXXXKET SPAA+RPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEE  XXXXXXXXXXXXXXXXXXXX  ATIKKIQEAA          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKG TPGSPEM
Sbjct:    1 MDIYADLPSAKPSANVAVASPXXXXXXXXXASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGXXXAAGARPNKTISKAESSXXXXXKETTSPAATRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDXXXXXXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGATPGSPEM 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL75_ECTSI4.440e-7485.55DNA-damage repair protein drt111, putative n=1 Tax... [more]
A0A6H5KK36_9PHAE3.800e-6984.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..168
IPR040052Splicing factor 45PANTHERPTHR13288SPLICING FACTOR 45 SPF45coord: 1..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15939contigEcto-sp13_S_contig15939:394..4011 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15939.4360.1mRNA_Ecto-sp13_S_contig15939.4360.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15939 394..4011 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15939.4360.1 ID=prot_Ecto-sp13_S_contig15939.4360.1|Name=mRNA_Ecto-sp13_S_contig15939.4360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MDIYADLPSAKPSADVSVASPATATASASPASKGSWAHSKFQGMIANRRT
AKAATSRMAPPTLKRPGPPSAASARPSKTKSKAESSTPSKSKETPSPAAS
RPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIIMEE
QERERKRQDEERAATIKKIQEAAAKSHGGGGAGPGAAGGGVGIGGGGIGA
PAMAGVGRGRGGGGGPGHDVAAMDASMGRGRGRGLSNLPAWVTKGKGVTP
GSPEMPYPPPPPPPPPPHPPLLTKPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040052RBM17