mRNA_Ecto-sp13_S_contig15939.4360.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15939.4360.1
Unique NamemRNA_Ecto-sp13_S_contig15939.4360.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.440e-74
Identity = 219/256 (85.55%), Postives = 220/256 (85.94%), Query Frame = 1 
Query:    1 MDIYADLPSAKPSADVSVAXXXXXXXXXXXXSKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAASXXXXXXXXXXXXXXXXXXKETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXATIKKIQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGVTPGSPEMP 768
            MDIYADLPSAKPSADV+VA   XXXXXX   SKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAA      XXXXXXXXXXXXX ETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEE        XXXXXXXXXXXX    ATIKKIQEAA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXX LSNLPAWVTKGKG TPGSPEMP
Sbjct:    1 MDIYADLPSAKPSADVAVASAAXXXXXXSPASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSKXXXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIIXXXXXXXXXXXXEERAATIKKIQEAAAKSHEVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEMP 256
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BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.800e-69
Identity = 216/255 (84.71%), Postives = 219/255 (85.88%), Query Frame = 1 
Query:    1 MDIYADLPSAKPSADVSVAXXXXXXXXXXXXSKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAASXXXXXXXXXXXXXXXXXXKETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXATIKKIQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGVTPGSPEM 765
            MDIYADLPSAKPSA+V+VA  XXXXXXXXX SKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPG   AA              XXXXXKET SPAA+RPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEE  XXXXXXXXXXXXXXXXXXXX  ATIKKIQEAA          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKG TPGSPEM
Sbjct:    1 MDIYADLPSAKPSANVAVASPXXXXXXXXXASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGXXXAAGARPNKTISKAESSXXXXXKETTSPAATRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDXXXXXXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGATPGSPEM 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15939.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL75_ECTSI4.440e-7485.55DNA-damage repair protein drt111, putative n=1 Tax... [more]
A0A6H5KK36_9PHAE3.800e-6984.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15939contigEcto-sp13_S_contig15939:394..4011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score248.1
Seed ortholog evalue4.9e-63
Seed eggNOG ortholog2880.D7FL75
Preferred nameRBM17
Model size828
KEGG koko:K12840
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001654,GO:0001745,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009653,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048024,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090596,GO:1901360,GO:1903311
Exons5
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG1996@1,KOG1996@2759
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-19_005230.1
Cds size828
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.4434218-CDS-Ecto-sp13_S_contig15939:393..5521681462842.4434218-CDS-Ecto-sp13_S_contig15939:393..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15939 394..552 +
1681462842.4580402-CDS-Ecto-sp13_S_contig15939:1370..14871681462842.4580402-CDS-Ecto-sp13_S_contig15939:1370..1487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15939 1371..1487 +
1681462842.4732137-CDS-Ecto-sp13_S_contig15939:2211..23971681462842.4732137-CDS-Ecto-sp13_S_contig15939:2211..2397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15939 2212..2397 +
1681462842.483487-CDS-Ecto-sp13_S_contig15939:2767..30731681462842.483487-CDS-Ecto-sp13_S_contig15939:2767..3073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15939 2768..3073 +
1681462842.4936137-CDS-Ecto-sp13_S_contig15939:3951..40111681462842.4936137-CDS-Ecto-sp13_S_contig15939:3951..4011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15939 3952..4011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15939.4360.1prot_Ecto-sp13_S_contig15939.4360.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15939 394..4011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15939.4360.1

>prot_Ecto-sp13_S_contig15939.4360.1 ID=prot_Ecto-sp13_S_contig15939.4360.1|Name=mRNA_Ecto-sp13_S_contig15939.4360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MDIYADLPSAKPSADVSVASPATATASASPASKGSWAHSKFQGMIANRRT
AKAATSRMAPPTLKRPGPPSAASARPSKTKSKAESSTPSKSKETPSPAAS
RPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIIMEE
QERERKRQDEERAATIKKIQEAAAKSHGGGGAGPGAAGGGVGIGGGGIGA
PAMAGVGRGRGGGGGPGHDVAAMDASMGRGRGRGLSNLPAWVTKGKGVTP
GSPEMPYPPPPPPPPPPHPPLLTKPP
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mRNA from alignment at Ecto-sp13_S_contig15939:394..4011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15939.4360.1 ID=mRNA_Ecto-sp13_S_contig15939.4360.1|Name=mRNA_Ecto-sp13_S_contig15939.4360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15939:394..4011+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATATATACGCTGACCTTCCGTCGGCGAAGCCTTCCGCGGATGTCTC
CGTCGCCTCTCCGGCCACCGCTACTGCTTCGGCGTCCCCGGCCTCGAAAG
GATCATGGGCCCACTCCAAGTTCCAAGGGATGATCGCCAACCGGAGGACG
GCCAAGGCCGTGAGTGTGCTTTGTTGCTTTGTTATGTGCTGTTTGTCTGT
GGGACACACCGAGTGTGTACTGCTTTAACCGCTGTGCAGTGGTGTGCTGC
AACACCTGAGAAAATTGCCCCGTGTGGAATGGCGATGGCGACGTGTAGAG
TGCGGTTCAAATCTCTCATAACAATACGTACCAGTCTTGCTCTCGAGAAA
GTGGTTGACACGACACAAGATACCACACCCCCCTGGACCGATGTTTCACA
GCTCCATTACTTGACGTCGAAGAGGATGGATACACATGAAACGATACTGT
TTCGGAAAGCTCTCAACGAGACAGCTTCAGAACCACCGTTTTTGGCGCTG
CCACTCTTTTTGCTGTGGAGAAAACGAGCTTTGAAACTCGGTGCAGGGGG
TATGACATCTTACGTTATACCCGGCAAACATCTTTTCGAGATCAATCCGT
GTGAGGCACAAGCCACCAGCTCGGTGCAGTGAAGTAGACTACAAGACTGA
CTGCAGAGTTGAAGAACACTTTAGGCATCGAGGGTTGCGGTGGAATTCGA
AGAATCACGTCAGGAGATAACTCCGAGGCGCTAGTCACGCAATTTTGTAT
CGAAGATCCGACCGGCTGTGTACCTACCCTGTCAACCACGGACACGCTTG
CTGTTGCAAGCACATGCCGTCTCCGCGCATGATTGTTTGGGGATGCACGT
GGCAGATGGTGAACAGAAAACCATACTCTGGAGCGCGCAACATCTGTATC
GCATGCAACTGCTGCTGCTGTTTCGCGTGTGTAGGTTCCTGACCCCCCCT
CCCGCCCTCCCCCCTGGTGTGCGAAAGGCAACTTCGAGGATGGCACCGCC
TACCTTGAAACGCCCAGGACCCCCTTCCGCCGCCAGCGCTCGCCCCAGCA
AGACCAAATCCAAGGCGGAGAGCTCTACCCCCTCAAAGTCAAAGGTAACA
TTGAGCTATGCATGCGTCGATCAATATACTCTGGGGTCGTGCGGACTACT
TTGTGCTGTCTGCGTGCCCCCGAGATTAGTCAATTTGTGTCTGCAGTAAT
CTTCGCGAGGACATGCAGCTTGGTTTTTGTAGGGAGCACGGGGCAGGGTT
AGGATAGGGGTACGAGCCCGCCCCCTCGATTTCAAAACGTCCTCGCGGAG
GCGGTCCTGTGTGTGGCAGTGGATCGACTGGGCAGGGGGGCGGTAGAGGA
ACGATGTACCAGTGGAGGAAGACTTAACTAACAGGTTCAGCAGGGATGCA
CTGGGGGAACGGTTCCAGAACCCGAAAGGTCAAGGTTTGCAGGTTTGCGA
CGCCTCGGCCATCCCGCGCCCGTTTAGCAACCTACATCAAACCGTTCCAC
ACAGTCAACGCTGACTGGTCTAAAGTGGGCTTTTCGGGCCGCCCAAGTCA
AACCGTCTTAGACCAGTCGGCGCTAACTGGTCTGAAGGGATTTTGAGCAG
CCGATTACATAAGACCGGTCAGCGCTGGCTAGTCTTATGGCTTGGGTTTG
CTTGCTCTAGCCGACCTTAGGTGTTCGGGAGCGAGCGCAGTCGCAGCTGC
CGACCAACTCTGCTCGTCCTGCCCCCCCCTCCCCCCTTCCTGCCATTTTG
TTTCTTCCACCTCCTAAGCAAATGCCCTTGCACCGTCCTAACCCCTTGTT
ACATGCCTCACCCTCCAGGAAACTCCTTCTCCAGCCGCGAGTAGGCCTCA
GTCGTGGGATATGGGGTTCGGAGACGTAGATGACGACTACGACCCGGCTC
GCCCCAACGACTACATGGAGTACTGCCGAGAGAGGATCGACAAGAAGAAG
CAGGAGGAGCGGGATAGGGAGCTCAAGATTATCATGGAGGAGCAGGAGCG
AGAGGTGTGTGAATGCTCCCTGTTTTTTTTCGTGGTAATTTTTTGTCTGC
GGCTGTCGTGGTAACTAACCGTGACTTTTTGTGCCGCTAGGGTAGGCTGG
ATTGTTTGGCGTTTCCGGACGGAAGAACGGGGAGAGAGTAAGCAGTCCCC
CTCCTCTCGCTATTGGGGATGGATCTGATGTGAAATGGGGGAACATAATA
GCTGTACAGCCCGCTCGGCGCGCTCATACGCTGCAGCGAAGGCCACATGG
ACGGCGGAGACAAGCTTCTTGCTTTGTCTTTCACACAAAAGCACGAAGAC
ACATGCAATTTTTTTTCCAATTTTGACGGCCGCCGTCCACCGCCGACGCA
CAAACACTTGCAACGTTTTTCTAGCGGAAACGCCAAGACGAAGAACGAGC
CGCCACGATCAAGAAGATCCAAGAAGCGGCCGCTAAGTCGCACGGGGGGG
GAGGGGCGGGTCCAGGGGCGGCGGGGGGGGGCGTTGGGATCGGAGGCGGA
GGAATCGGCGCTCCAGCAATGGCAGGCGTGGGTAGAGGGCGGGGTGGCGG
CGGTGGCCCCGGGCACGACGTGGCGGCCATGGACGCGAGCATGGGCCGCG
GGCGAGGTCGCGGGCTTTCCAACCTTCCGGCGTGGGTCACCAAGGGGAAG
GGGGTCACGCCGGGTTCTCCGGAGATGCCGGTAAGGGGAAGGGAATATTT
TTTTAGGCAAACCAAAATTTGGGTTTTGATGGTGGAAGACCAAGTAAATA
TCTTTCCTGGGGTTCGGCAGAGCATGTTGATTTCCTTTGAAAATCATGTC
CTGGTGAGGGTTGTATCCGTTCTCCTTCCCTTTAACCATCATGTTTTTTT
TCGCCCAACAAAGCCAGTTTTTGTTTTGTATGTGTGGTTATGATAGTTCA
AACATGGTTACCAGCTTGGGCTGAAATCCCTACACTCACGTTGGATGATC
TCTTCGTCACGTTCTCTGATTACTTTCTGCGGCTGGACACCGTCACGTTG
GTGCGATTTTTTGAGTCAAAAGGGCTCTACTTCTTGAAAACACTACGCAA
GGGTGACATTGCGACAACATTTCCTTGTCACCCCCCCCCCGCCCCCTCTT
GCCCCTCGGTGTTTGCCATCGCGGTTGGGCTTTCGTCGCTTGGCAACCAC
GTTGTAAAACAAGCCGCCCCCCCCGGTGTTGAATGGTGGTCGAGTAGAAT
ATGCTGTGCGGGGTCAAGAACCCTCACTCCGCGCAAAGGGGATAATCGCA
CGTTGTGGAAAACTGGTCAAGCACCCTCGAGGCTGTTACACAGCACTTAC
AACTGCCTCTGGAAGCGAAAGCACCAGAAAAAAAATCAAGTCATACGAAC
CTGTCATCCGCACGGAAGGAAGTAAGCACGAGATTCCGAACACCCTTAGC
AGGATGTAGCGCACCCTTCATGCGACGCCGAATACCTTACGGCACTTCGT
GCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAGCCCGGCGTGCTCCGTCC
CGGCTTTGTAGGGATGCGAGGACAATGGTCTAACGACTACGGCATGCACG
ACCATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCACCA
CTACTTACCAAACCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15939:394..4011+

>mRNA_Ecto-sp13_S_contig15939.4360.1 ID=mRNA_Ecto-sp13_S_contig15939.4360.1|Name=mRNA_Ecto-sp13_S_contig15939.4360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15939:394..4011+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATATATACGCTGACCTTCCGTCGGCGAAGCCTTCCGCGGATGTCTC
CGTCGCCTCTCCGGCCACCGCTACTGCTTCGGCGTCCCCGGCCTCGAAAG
GATCATGGGCCCACTCCAAGTTCCAAGGGATGATCGCCAACCGGAGGACG
GCCAAGGCCGCAACTTCGAGGATGGCACCGCCTACCTTGAAACGCCCAGG
ACCCCCTTCCGCCGCCAGCGCTCGCCCCAGCAAGACCAAATCCAAGGCGG
AGAGCTCTACCCCCTCAAAGTCAAAGGAAACTCCTTCTCCAGCCGCGAGT
AGGCCTCAGTCGTGGGATATGGGGTTCGGAGACGTAGATGACGACTACGA
CCCGGCTCGCCCCAACGACTACATGGAGTACTGCCGAGAGAGGATCGACA
AGAAGAAGCAGGAGGAGCGGGATAGGGAGCTCAAGATTATCATGGAGGAG
CAGGAGCGAGAGCGGAAACGCCAAGACGAAGAACGAGCCGCCACGATCAA
GAAGATCCAAGAAGCGGCCGCTAAGTCGCACGGGGGGGGAGGGGCGGGTC
CAGGGGCGGCGGGGGGGGGCGTTGGGATCGGAGGCGGAGGAATCGGCGCT
CCAGCAATGGCAGGCGTGGGTAGAGGGCGGGGTGGCGGCGGTGGCCCCGG
GCACGACGTGGCGGCCATGGACGCGAGCATGGGCCGCGGGCGAGGTCGCG
GGCTTTCCAACCTTCCGGCGTGGGTCACCAAGGGGAAGGGGGTCACGCCG
GGTTCTCCGGAGATGCCGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCACCCACCACTACTTACCAAACCACCC
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