mRNA_Ecto-sp13_S_contig15932.4355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15932.4355.1
Unique NamemRNA_Ecto-sp13_S_contig15932.4355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15932.4355.1 vs. uniprot
Match: Q8QNA8_ESV1K (EsV-1-179 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA8_ESV1K)

HSP 1 Score: 414 bits (1064), Expect = 7.000e-146
Identity = 189/214 (88.32%), Postives = 200/214 (93.46%), Query Frame = 1 
Query:    4 HSLWLAMAFHKPCKFPITRYEGEYRATWTQRWTRIGGESGSWQFFSHARDITPDNDGEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACGCVSLKENDLRFFIHAGITVGAHQKNRGIDNLCMTPAVYCIPGTGGKFNLALVTTNKTIGETLVEVYFLCGRGTGEVRSQLPGMHKFYRGARIKKCFANIANLFGGACGD 645
            HSLWLAMA HKPCKFPITRYEGEYR TWTQRWTRIGGESGSWQFFSHARDITPD+DGEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACG VSLK+NDL FFI AGITVGA++K+ GIDNLCMTPAV+CIPG GGKF+L LVTTNK+IG+TLVEVYFLCGR T EVRS+LPGMHKFYR ARIKKCFA  A +FGGACGD
Sbjct:   14 HSLWLAMARHKPCKFPITRYEGEYRPTWTQRWTRIGGESGSWQFFSHARDITPDDDGEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACGWVSLKKNDLMFFIRAGITVGAYRKDHGIDNLCMTPAVFCIPGAGGKFDLTLVTTNKSIGKTLVEVYFLCGRETAEVRSRLPGMHKFYRAARIKKCFAYTAKIFGGACGD 227
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BLAST of mRNA_Ecto-sp13_S_contig15932.4355.1 vs. uniprot
Match: D8LPJ8_ECTSI (EsV-1-179 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ8_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 3.040e-141
Identity = 182/215 (84.65%), Postives = 197/215 (91.63%), Query Frame = 1 
Query:    1 THSLWLAMAFHKPCKFPITRYEGEYRATWTQRWTRIGGESGSWQFFSHARDITPDNDGEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACGCVSLKENDLRFFIHAGITVGAHQKNRGIDNLCMTPAVYCIPGTGGKFNLALVTTNKTIGETLVEVYFLCGRGTGEVRSQLPGMHKFYRGARIKKCFANIANLFGGACGD 645
            T S WL+MAFHKPCKFPITRYEGEYR TWT+RWT IGG++GSWQFFSHAR I PDN+GE YTWEGE+GW+NL+RPMLAGPSNDWGAFDLAGLLQINQ GELIKACGCVSLK NDLR+FI AGITVGAH  +RGIDNLCMTPAV+CIPGTGGKF+L LVTTNKTIG+TLVEVYFLCGR T EVRS+LPGMHKFYR AR+KKCFAN  NLFGGACGD
Sbjct:   27 TRSRWLSMAFHKPCKFPITRYEGEYRPTWTRRWTTIGGKNGSWQFFSHARAILPDNNGESYTWEGEYGWFNLMRPMLAGPSNDWGAFDLAGLLQINQSGELIKACGCVSLKANDLRYFIRAGITVGAHCIDRGIDNLCMTPAVFCIPGTGGKFDLTLVTTNKTIGKTLVEVYFLCGRETAEVRSRLPGMHKFYRRARLKKCFANFVNLFGGACGD 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15932.4355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNA8_ESV1K7.000e-14688.32EsV-1-179 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ8_ECTSI3.040e-14184.65EsV-1-179 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15932contigEcto-sp13_S_contig15932:268..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons1
Cds size627
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.2136276-UTR-Ecto-sp13_S_contig15932:267..2881681462842.2136276-UTR-Ecto-sp13_S_contig15932:267..288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15932 268..288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.2237694-CDS-Ecto-sp13_S_contig15932:288..9151681462842.2237694-CDS-Ecto-sp13_S_contig15932:288..915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15932 289..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15932.4355.1prot_Ecto-sp13_S_contig15932.4355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15932 289..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15932.4355.1

>prot_Ecto-sp13_S_contig15932.4355.1 ID=prot_Ecto-sp13_S_contig15932.4355.1|Name=mRNA_Ecto-sp13_S_contig15932.4355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MAFHKPCKFPITRYEGEYRATWTQRWTRIGGESGSWQFFSHARDITPDND
GEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACGC
VSLKENDLRFFIHAGITVGAHQKNRGIDNLCMTPAVYCIPGTGGKFNLAL
VTTNKTIGETLVEVYFLCGRGTGEVRSQLPGMHKFYRGARIKKCFANIAN
LFGGACGD*
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mRNA from alignment at Ecto-sp13_S_contig15932:268..915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15932.4355.1 ID=mRNA_Ecto-sp13_S_contig15932.4355.1|Name=mRNA_Ecto-sp13_S_contig15932.4355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15932:268..915+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCACAGTCTCTGGCTAGCCATGGCTTTCCACAAGCCCTGTAAATTTCC
AATCACGAGGTACGAAGGCGAGTATCGGGCGACTTGGACTCAGCGCTGGA
CAAGGATAGGTGGCGAAAGTGGCTCCTGGCAATTCTTCAGCCACGCCCGT
GACATAACACCCGATAACGACGGCGAACCATACACGTGGGAGGGCGAATT
CGGCTGGTACAACCTTATACGTCCAATGCTGGCCGGGCCGAGCAACGACT
GGGGGGCGTTTGACTTGGCGGGACTCTTGCAAATCAATCAGCGCGGCGAA
TTAATCAAAGCCTGTGGCTGCGTCTCGCTCAAAGAAAACGATCTGAGGTT
TTTCATACACGCCGGAATAACAGTCGGCGCACATCAGAAGAATCGCGGAA
TCGACAACTTGTGTATGACGCCGGCTGTTTATTGCATCCCCGGAACGGGT
GGAAAATTCAACCTGGCGCTCGTGACCACGAATAAGACCATTGGCGAGAC
CCTTGTCGAGGTCTACTTCCTGTGCGGACGCGGGACGGGAGAAGTTCGGA
GCCAACTCCCTGGCATGCACAAGTTTTACCGGGGGGCGCGCATCAAAAAA
TGTTTTGCCAATATTGCAAACCTTTTCGGTGGCGCGTGTGGAGATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15932:268..915+

>mRNA_Ecto-sp13_S_contig15932.4355.1 ID=mRNA_Ecto-sp13_S_contig15932.4355.1|Name=mRNA_Ecto-sp13_S_contig15932.4355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15932:268..915+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTTCCACAAGCCCTGTAAATTTCCAATCACGAGGTACGAAGGCGA
GTATCGGGCGACTTGGACTCAGCGCTGGACAAGGATAGGTGGCGAAAGTG
GCTCCTGGCAATTCTTCAGCCACGCCCGTGACATAACACCCGATAACGAC
GGCGAACCATACACGTGGGAGGGCGAATTCGGCTGGTACAACCTTATACG
TCCAATGCTGGCCGGGCCGAGCAACGACTGGGGGGCGTTTGACTTGGCGG
GACTCTTGCAAATCAATCAGCGCGGCGAATTAATCAAAGCCTGTGGCTGC
GTCTCGCTCAAAGAAAACGATCTGAGGTTTTTCATACACGCCGGAATAAC
AGTCGGCGCACATCAGAAGAATCGCGGAATCGACAACTTGTGTATGACGC
CGGCTGTTTATTGCATCCCCGGAACGGGTGGAAAATTCAACCTGGCGCTC
GTGACCACGAATAAGACCATTGGCGAGACCCTTGTCGAGGTCTACTTCCT
GTGCGGACGCGGGACGGGAGAAGTTCGGAGCCAACTCCCTGGCATGCACA
AGTTTTACCGGGGGGCGCGCATCAAAAAATGTTTTGCCAATATTGCAAAC
CTTTTCGGTGGCGCGTGTGGAGATTAG
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