mRNA_Ecto-sp13_S_contig1591.4338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1591.4338.1
Unique NamemRNA_Ecto-sp13_S_contig1591.4338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6H5K0T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T1_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 5.630e-45
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGHDIVIL 252
            VNTVVLAVDH DAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSG DIVIL
Sbjct: 1368 VNTVVLAVDHVDAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSG-DIVIL 1450          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: D7FSJ3_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.110e-20
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1
Query:  115 MLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGHDIVIL 252
            ML+GLGFRCYFSTGRQIFEFVVTMASLIDLVM+LSGACSGHDIV+L
Sbjct:    1 MLFGLGFRCYFSTGRQIFEFVVTMASLIDLVMNLSGACSGHDIVVL 46          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6P7ZLK4_9AMPH (Voltage-dependent L-type calcium channel subunit alpha n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7ZLK4_9AMPH)

HSP 1 Score: 62.0 bits (149), Expect = 2.640e-9
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSG 222
            +NTV +A +H + PDW  +AQD  N    ++F  E  L +Y LGF+ YF +    F+  V  + L+++V+ L+G
Sbjct:  445 LNTVTIATEHHNQPDWVTSAQDTANQVLLALFTAEMALKMYALGFQAYFMSLFNRFDCFVVCSGLLEIVLVLTG 518          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: UPI001CF31C8F (voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF31C8F)

HSP 1 Score: 62.0 bits (149), Expect = 2.640e-9
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMD 213
            +NT+VLAV++ + PDW    Q      F +IF VE  L LYGLG   YFS+   IF+F V    +ID++++
Sbjct:  491 LNTIVLAVEYHNQPDWLTEFQYNAEIVFLTIFFVEMLLKLYGLGIHQYFSSSFNIFDFAVVCCGIIDMLIE 561          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A7S1LCP1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LCP1_NEODS)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-8
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDL 204
            +NTVVLA  H + PDW     +  N  F  IFV E  +++ G+GFR +F++G  + +F+V +AS+++L
Sbjct:  516 LNTVVLAAQHHEQPDWMTEWTERANLGFLGIFVFEVVVVMTGVGFRRFFTSGFFVLDFLVVVASIVEL 583          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6P9BSF4_PANGU (Voltage-dependent L-type calcium channel subunit alpha n=15 Tax=Serpentes TaxID=8570 RepID=A0A6P9BSF4_PANGU)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-8
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVM 210
            +NT+ +A +H D PDW   AQD+ N    S+F VE  L +Y LG R YF +    F+ +V    +++L++
Sbjct:  446 LNTISIATEHHDQPDWLTHAQDVANRVLLSLFAVEMILKMYALGLRQYFMSLFNRFDCLVVCTGILELIL 515          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: X6N3J9_RETFI (Voltage-dependent T-type calcium channel subunit alpha-1H n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N3J9_RETFI)

HSP 1 Score: 58.9 bits (141), Expect = 3.020e-8
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGH 237
            +NTVVLA+      D   T  ++FN  F  IFV+E  LML GLG R ++S    IF+ ++ M SL+DL++    + S H
Sbjct:  214 LNTVVLALVWPHMNDTAKTVLEVFNSIFTVIFVIELVLMLIGLGPRLWWSDHSNIFDGIIVMVSLVDLIV---SSASNH 289          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A267GKN3_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GKN3_9PLAT)

HSP 1 Score: 58.9 bits (141), Expect = 3.180e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
            +NTV +A+D  + P W  T        F  +F+ E C+ +YGLGFR YF +   IF+  V +ASL +++
Sbjct:  499 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 567          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A267DH19_9PLAT (EF-hand domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DH19_9PLAT)

HSP 1 Score: 58.9 bits (141), Expect = 3.200e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
            +NTV +A+D  + P W  T        F  +F+ E C+ +YGLGFR YF +   IF+  V +ASL +++
Sbjct:   50 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 118          
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A1I8H725_9PLAT (EF-hand domain-containing protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8H725_9PLAT)

HSP 1 Score: 58.9 bits (141), Expect = 3.210e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
            +NTV +A+D  + P W  T        F  +F+ E C+ +YGLGFR YF +   IF+  V +ASL +++
Sbjct:  802 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 870          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0T1_9PHAE5.630e-4597.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ3_ECTSI6.110e-2093.48Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6P7ZLK4_9AMPH2.640e-936.49Voltage-dependent L-type calcium channel subunit a... [more]
UPI001CF31C8F2.640e-942.25voltage-dependent L-type calcium channel subunit a... [more]
A0A7S1LCP1_NEODS1.240e-839.71Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A6P9BSF4_PANGU1.260e-837.14Voltage-dependent L-type calcium channel subunit a... [more]
X6N3J9_RETFI3.020e-840.51Voltage-dependent T-type calcium channel subunit a... [more]
A0A267GKN3_9PLAT3.180e-837.68Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A267DH19_9PLAT3.200e-837.68EF-hand domain-containing protein n=2 Tax=Macrosto... [more]
A0A1I8H725_9PLAT3.210e-837.68EF-hand domain-containing protein n=3 Tax=Macrosto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1591contigEcto-sp13_S_contig1591:382..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.5
Seed ortholog evalue4e-16
Seed eggNOG ortholog2880.D7FSJ3
Preferred nameCATSPER3
Model size254
KEGG koko:K04851,ko:K04855,ko:K16891,ko:K16892,ko:K21862
KEGG TC1.A.1.10.13,1.A.1.11.1,1.A.1.11.20,1.A.1.11.21,1.A.1.11.5,1.A.1.19.1,1.A.1.19.3
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001508,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005575,GO:0005623,GO:0005886,GO:0005891,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007338,GO:0008037,GO:0008150,GO:0008324,GO:0009566,GO:0009987,GO:0009988,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0019953,GO:0022414,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035036,GO:0036128,GO:0042391,GO:0044425,GO:0044459,GO:0044464,GO:0044703,GO:0051179,GO:0051234,GO:0051704,GO:0051899,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0071944,GO:0072511,GO:0086010,GO:0098655,GO:0098796,GO:0098797,GO:1902495,GO:1990351
Exons3
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
Cds size252
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.6825507-CDS-Ecto-sp13_S_contig1591:381..4061681462840.6825507-CDS-Ecto-sp13_S_contig1591:381..406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1591 382..406 +
1681462840.6983445-CDS-Ecto-sp13_S_contig1591:706..9141681462840.6983445-CDS-Ecto-sp13_S_contig1591:706..914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1591 707..914 +
1681462840.7082572-CDS-Ecto-sp13_S_contig1591:1482..15011681462840.7082572-CDS-Ecto-sp13_S_contig1591:1482..1501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1591 1483..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1591.4338.1prot_Ecto-sp13_S_contig1591.4338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1591 382..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1591.4338.1

>prot_Ecto-sp13_S_contig1591.4338.1 ID=prot_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFS
TGRQIFEFVVTMASLIDLVMDLSGACSGHDIVIL
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mRNA from alignment at Ecto-sp13_S_contig1591:382..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1591.4338.1 ID=mRNA_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:382..1503+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACACCGTCGTCCTCGCCGTCGGTGAGGGGAGAAAAAAATTGATGTT GTGCAGTCTCAAGTGTGCGAATGCCGCATGTGAGTGGCCGTTGTACATCG TACGTCCAACACACGACGTGGACTGCGGTGGAAATACCGACGGTAGACCA CGTTGCGGTACTATTCTGTGGCGATAGTTCTCCACCAGTTTTTCACACTT CCACTGGCTCCCTTTGCAGAAAACTTACCAAGGGCGAGGTGAGCGCGGAC GGGGTCGGTATTGTAGAACAGGAGGGGGCTTTTAACTGAGGAAAATCGAA CCGTAACACAAACGCCCACGAGCAGATCATGCGGACGCGCCGGACTGGCA ACTGACTGCCCAAGACATCTTCAACCACACCTTCGCCTCGATCTTCGTGG TGGAAACGTGTCTGATGCTGTACGGCCTCGGATTCCGGTGCTACTTCTCC ACGGGACGACAGATATTCGAATTCGTCGTTACCATGGCCTCCCTGATCGA CCTCGTTATGGACCTCAGCGGTGCCTGTTCGGGGTGAGTTTATTCCCCGC GATGACGGGGCTGCTGGTGGTAAAAGTCACACATCGTGACCCGAGTATTT GTCGGCTCTTTGACTGGACTCTTGTTGTGGAACCTGGTGGCCGCGGTTTT GCGGGGGTTGTTTCCCCTGTCGGCGGCTTGCGAGTGACGCTCGTCATTCG CCTGGTGGCTTCCACAGCCACGCCAAAAATGATACATTCTTTGGTGTGTT AACGGCTTTTGTGCGAAGGAACTGGCCCTTCGTGACTCATGCATTGGTCA TTGCTTTTGTTAGACTAGTTGGTTGTGTTGCGGTGAAAGCAGTGCCACGC CAAGACACCCCGTACCTTCTCCGACATCATTTGTACCGGCGGATCGCGTC GCGGGCCTGGCCAGTCGCACCCCAGGCTCCGACGACACCTTCCAGCAGAA TAAAAGCTGTCGCCATCCAAGAGCTGTCCGCCACCCCGTCATTCTCCTTC CTTCTTTTTGCCGAGAGCACCAGTATCTATATGTTCACATACTGACAGAG GCCCTTTCGTGGTGCCGTGTCTCTCTTGTCGTTGTGCTTGAAACGAAAAA GTCATGACATCGTCATCCTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1591:382..1503+

>mRNA_Ecto-sp13_S_contig1591.4338.1 ID=mRNA_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:382..1503+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACACCGTCGTCCTCGCCGTCGATCATGCGGACGCGCCGGACTGGCA
ACTGACTGCCCAAGACATCTTCAACCACACCTTCGCCTCGATCTTCGTGG
TGGAAACGTGTCTGATGCTGTACGGCCTCGGATTCCGGTGCTACTTCTCC
ACGGGACGACAGATATTCGAATTCGTCGTTACCATGGCCTCCCTGATCGA
CCTCGTTATGGACCTCAGCGGTGCCTGTTCGGGTCATGACATCGTCATCC
TC
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