mRNA_Ecto-sp13_S_contig15908.4336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15908.4336.1
Unique NamemRNA_Ecto-sp13_S_contig15908.4336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.850e-21
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:   32 MEGDTGSGAARPDEWGSAVLSGDATKLAELVLLWSGSKPELALSILRDCVSLLENQMALSGPVSSP 229
            MEG  GS +ARPDEWG AV SGDATKLAELVLLWSG KPE ALS++RDCVS+LE ++ALS P SSP
Sbjct:    1 MEGRAGSSSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSP 66
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BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.220e-19
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 2 
Query:   32 MEGDTGSGAARPDEWGSAVLSGDATKLAELVLLWSGSKPELALSILRDCVSLLENQMALSGPVSSPPSSPR 244
            MEGD GSG+ARPD WGSAV SGDAT LAELVLLW G  P  ALSILR CV++LE ++ALS P SSP  SP+
Sbjct:    1 MEGDAGSGSARPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQ 71
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BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.080e-18
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:   11 RSDTKSIMEGDTGSGAARPDEWGSAVLSGDATKLAELVLLWSGSKPELALSILRDCVSLLENQMALSGPVSSPPSSP 241
            R DT ++MEGD GSG+A PD+WG AV +GDATKLAELVL+WSGS+PE ALS+LR+CV LLE + A S P SSP  SP
Sbjct:   49 RIDTYTVMEGDVGSGSASPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSP 125
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BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 4.880e-8
Identity = 45/79 (56.96%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:    2 GLIRSDTKSIMEGDTGSGAARPDEW---GSAVLSGDATKLAELVLLWSGSKPELALSILRDCVSLLENQMALSGPVSSP 229
            GL  SD + +M G    G  +   W   GSAV SG ATKLAELVL+WS SKPE ALSI R CVSLLE + A S   SSP
Sbjct:   45 GLNTSDKQRVMGGRRRFGVRKA--WRRRGSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSP 121
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BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.900e-5
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  101 ATKLAELVLLWSGSKPELALSILRDCVSLLENQMALSGP 217
            AT+LA+LVL+WSGS+PE ALSIL+DCVSLLE + A S P
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAP 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15908.4336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH80_ECTSI1.850e-2175.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA8_ECTSI3.220e-1970.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE1.080e-1867.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI4.880e-856.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI1.900e-571.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15908contigEcto-sp13_S_contig15908:10..4039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2647
Hectar predicted targeting categoryother localisation
Exons3
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.5266454-UTR-Ecto-sp13_S_contig15908:9..401681462840.5266454-UTR-Ecto-sp13_S_contig15908:9..40Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15908 10..40 +
1681462840.5866256-UTR-Ecto-sp13_S_contig15908:1945..40391681462840.5866256-UTR-Ecto-sp13_S_contig15908:1945..4039Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15908 1946..4039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.5369637-CDS-Ecto-sp13_S_contig15908:40..771681462840.5369637-CDS-Ecto-sp13_S_contig15908:40..77Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15908 41..77 +
1681462840.5498943-CDS-Ecto-sp13_S_contig15908:1026..12151681462840.5498943-CDS-Ecto-sp13_S_contig15908:1026..1215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15908 1027..1215 +
1681462840.5711493-CDS-Ecto-sp13_S_contig15908:1649..19451681462840.5711493-CDS-Ecto-sp13_S_contig15908:1649..1945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15908 1650..1945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15908.4336.1prot_Ecto-sp13_S_contig15908.4336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15908 41..1945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15908.4336.1

>prot_Ecto-sp13_S_contig15908.4336.1 ID=prot_Ecto-sp13_S_contig15908.4336.1|Name=mRNA_Ecto-sp13_S_contig15908.4336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MEGDTGSGAARPDEWGSAVLSGDATKLAELVLLWSGSKPELALSILRDCV
SLLENQMALSGPVSSPPSSPRLHSHGEWGLAVTSRDTTKLPELVLVWSDS
EPERALSFLRSCVSLMEKEVALSPLPSPPITPGELFVDVWSKLSTSTPIE
LKRCRKSCLAVGWKVFLVQYRPS*
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mRNA from alignment at Ecto-sp13_S_contig15908:10..4039+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15908.4336.1 ID=mRNA_Ecto-sp13_S_contig15908.4336.1|Name=mRNA_Ecto-sp13_S_contig15908.4336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15908:10..4039+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCTGATTAGGAGTGATACAAAAAGCATCATGGAAGGAGATACCGGTT
CGGGTGCCGCAAGGCCTGGTGAGTACAGAGCGTTGTTGGTGCAGAAGTCG
TGCTTCGCTCTTTTTCCTCTCACGTACGCAGAAAGAATGCGAGCCTCAGA
AATGCCGTAGCTGTGTGAAGTTTTTGTCACATTTTCTTCCTGTTGATCTT
TGTGCGTTTCTGATTTGGTAAACAGTGACGGTTGCAGGTGAACCATCGCG
GGGTGATAGCGTATACAAAAGCTGGACTATTTTATTGCCGTCTCGGGCTA
TGCTGGTCCATCTGTAGATGTTGTGGTGTGCAATTTCGCCCCTGACTCCC
CCAATCCGAATGTGATTTTCTAGACAGCTCCAGATATCCGCAAGGCCTTT
CCATGGAAAAGCTCTTTGTGCACCTGGGGCTACTTTGATTTTCTCATGGC
CAAATTGCTCGCATTCTTCGCATGGTTCGACAGCGGTCTGACTAGGCTAC
CTTTGAACGTGTTTTTGCTCCCTCAAAACGCTGGACGCAACTACTGGTGC
GTCCTTGTTTGTCCAGCTACAACAGTGGTTGATACGGAGCAAAGCAGTTC
AAGTGCTTCGTTGGTGCTGTGACGCACCCTCTTGAGTTTTGATGCATTGA
GGGATGCGTTGGGCTTTTTTGTCTTGGGTGGTACACTGCAGCTGACGCTC
TACAACCAGCAATATGGGATGTTTTTGTGAATGGGAACATAAGCCATGAG
AATGACGGCGATTTTCTCCGAAAGTTGAGCAGCGCATGCACACCGTGACA
TTGATTTGTGGTAGTTTTTTACCTCTGACATGTGCGACAAATGTCTGAAC
GTCTGACTCCTAGAGAAATATCTTATGTTTGTGCCATTCTCTTTCGAATG
AAATCGCTGTATTCGGAAGCGAGGAGAAAGGTTAATGGCCAACCTGTATC
TCAGTCTGCGGCCCATACTAACCCAACAATTTCGTTTGACAACGCCGTCG
AATTGACGATTTCGCAGATGAATGGGGTTCAGCCGTTCTGAGTGGCGACG
CGACCAAGCTCGCTGAGCTGGTGCTGCTTTGGTCCGGTTCGAAGCCCGAG
CTGGCTCTGTCGATTCTTAGAGACTGCGTCTCTTTGCTGGAGAACCAGAT
GGCCCTTTCAGGTCCGGTTTCCTCTCCCCCTTCTTCGCCCCGACTTCATT
CACATGGTGGGCTCCTTTTCGTCGTTTTGAGTTCTTGGATTTCCCTGCGC
TGTCACCGACTTGAGGAGACGCCACTGGTGTTGCCTGGGGGCTAAGGACC
GGTTCACATGCTATACTGGCAGTGAAGCGTGCAAGGTTGGTAGAGCGTAG
CGCCAGTCTTCGATCCAGACGGCACCTTGTCATTGATTGCTTTCGCCATT
TAGTCCCAAGGTGGGCTGGCGACCCGTCTCACGTACCACCTGCATCGTTG
GATAACGGAGCTGAGCCCTATCTACATGATGCATTACGAGGGACCAGGTG
TGTTTGAGAATCACCTTCGAGGGACATTACGGTATTCGCAAGTAGTTGGC
CGGGTTCATGTCCATCCCTGATCTCAAGCTGCGACCGATCCGAAACCAGC
AAGTGTCTTTGACAACACCAGCCGATTGATGATTCCTCAGGTGAATGGGG
TTTGGCCGTGACAAGCCGCGATACAACCAAGCTACCGGAGCTGGTCCTGG
TTTGGAGCGATTCCGAACCCGAGCGGGCTCTGTCATTTCTTAGGAGCTGC
GTATCTTTGATGGAGAAGGAGGTTGCGCTTTCACCCCTTCCATCGCCCCC
GATTACGCCTGGTGAGTTATTCGTTGACGTCTGGAGTAAATTGTCAACCA
GCACTCCTATCGAGTTGAAGAGATGCCGCAAATCTTGCTTGGCTGTTGGC
TGGAAAGTATTTCTTGTGCAATATCGCCCATCTTGAACCGGAAAAGAATG
TAGTGAATCGAACATTGACATTTTGAAAGCACATTGAACCGGCTTTCCGC
CCTGTTGCAATTTTTTTTTTTACCACTCGTTCTGGGGAAAACGGTTGTTT
TTCCCCCTTGAACGTAACGGTGACGCCAGAATCTCGCCGTTCCCTGTGTC
CCCGGGGCTCCGTGATGGTGTTTCCCCCCCCAAGTGTGCTCTGTAGTGCT
CGGCTTTCTTTTCGAACGGCCTGTTTCAGACCACACCATGTGTGGCGGCC
CCACTACGAAGCTTTACACACCACACATGACATGACGACAGCTCTCTGTA
CCTCCATGCGTTTCCGCAAAGATCAGCCCCACGGAGCGCAGTAAGTGGGG
TCATCAAAATAATGCGATGTGTTCGGCTGAGCGATTAAGGCAGGACTAGT
AAAGTGTCATTTAACGACAGGATGGGGCGTGAACTGCACGACAGTATCCG
TTTTGTTACCAATGTAATTTCGGAGGTTACACCAACTGAATATCCTGATA
TCTCTCTACTTGCCGATGATACGAGATACTACATCAAACATGGACTCGGG
TCGACATTGATCATCACGAACAATCTAACTCCAAGATCCAAACGCCAACG
ACACTGCAAACCGACTAGGTTTTTTGACCTGTTCAAACCGGTCGATGTTC
CGCCCATGGTTGTATACATCTCGGTATTCTTGGCCAATCAGCGTGTGGTC
TCGCGGCTAGGTCCCGAGCCAATTCATTGTGCACCTTATTGTGTCGCTCA
ACTCCCCGCGTACACCGTTGTCGGCGTTTGTTTTTTGAAGCACAACAACG
TGTCGAAAGCTGCTCTGCCCAGCAGCAACATGCTATGGTGCAATTGAATT
TGCTTGCTACAGGCCCCTTCCCGCCCTCGCGTTTCTACTAAGTTCTTGTG
CCCTCTCCGGCACACTCAGGAGGTTGTATGTGTTCGGCATTGACGCATAA
AGTCCCGCGAGGTGTCAGAAGTCGTGCGCCGATGCGTAATTCCTAGTTGC
AAGAACCTGATGACGACTGCAATGGTGAGTTTTGTCCGTTTTTTCAAGGC
AATTGAACTTAGCGCGATACCAACATTTTAATCATCTCCAGTTTTGTGGT
CCTCAGAAGAGGCGATAAACACCGAGGTAGCAGTTTTTTTTGTAGGGTTA
GGCACACACACTGTGGTTTTCGGCCCAGCGCATTGCTCCGACGGGCCACA
CCAAGTTGGTACTTGGCATGTCTTGGACAAGATCTGACGCAATGCTTGGT
TTTCTGCAGAAAGAAACCACGATCTTTCTAGGCAATTATTGGCAAGTATC
ACGGAATGACCCCAGGATTTTGTCTCTCGAAAGCCGGTGCATCAACTCTT
CCACGATAGAGCCCCTCCCCAACGATAGACTGTTTCTGTTCAAGACGCTT
GTTCGGTCTCGTCAGTGCTGTGTGTGTCATTGTTGTGTGCCCAATTCTGG
GCTCCATTGGCAGGAGGTCGTTAGCAGGGCATTGTGGCATTTGCTGGTCG
GTGCACTGCCTCTTCTCACCGTCAGCCCCACCATGATACCATGTCTCTCA
CAGTCATGATACAAGACTCCGTCTCTCGAAGGTTTCGTCGCTCAACAGTC
AGGGTGTTGGGGATACAGCGCCCGCAACGGAACCGGTGCAGTCCAATCCT
CGAGGTCTCATTTGAAGGCAACAAGCCAAACTATTCTACGCACTGTTCGC
GCCTCAGCTCGATTATGGCGTACCTGGCAATTGTTTTGTAGGTGAAGCCC
TTGAGGCTTGATTGGCTTTCTGTGGGTAGACAAACGACGCACAAGGCCAT
AGCTTGATTCCTTCATCGACAGTTTTTTAATGCCCAGCTCCTCACTGTTT
TTGATTGTGTGGGCCCTGAAGCGTCCTCTGTTTCGGTTGCCAAGGCCTTG
GAACTTATACAGTTTCTCCACCACAATGTAGAAGCTTTTGAAGCTCGTCA
TTTTTTATCAACCCTGTCCATTCGCCCTTGCGCCGGTTAATGTTCCGCAG
CGCTCACGCGTAACTCTTGCTTGGACGCCCTCATCGTTGCTTTGAACGAG
ACGTGCGATGCGGGGAGTTGGTACACGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15908:10..4039+

>mRNA_Ecto-sp13_S_contig15908.4336.1 ID=mRNA_Ecto-sp13_S_contig15908.4336.1|Name=mRNA_Ecto-sp13_S_contig15908.4336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15908:10..4039+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGAGATACCGGTTCGGGTGCCGCAAGGCCTGATGAATGGGGTTC
AGCCGTTCTGAGTGGCGACGCGACCAAGCTCGCTGAGCTGGTGCTGCTTT
GGTCCGGTTCGAAGCCCGAGCTGGCTCTGTCGATTCTTAGAGACTGCGTC
TCTTTGCTGGAGAACCAGATGGCCCTTTCAGGTCCGGTTTCCTCTCCCCC
TTCTTCGCCCCGACTTCATTCACATGGTGAATGGGGTTTGGCCGTGACAA
GCCGCGATACAACCAAGCTACCGGAGCTGGTCCTGGTTTGGAGCGATTCC
GAACCCGAGCGGGCTCTGTCATTTCTTAGGAGCTGCGTATCTTTGATGGA
GAAGGAGGTTGCGCTTTCACCCCTTCCATCGCCCCCGATTACGCCTGGTG
AGTTATTCGTTGACGTCTGGAGTAAATTGTCAACCAGCACTCCTATCGAG
TTGAAGAGATGCCGCAAATCTTGCTTGGCTGTTGGCTGGAAAGTATTTCT
TGTGCAATATCGCCCATCTTGA
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