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Homology
BLAST of mRNA_Ecto-sp13_S_contig15880.4317.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI) HSP 1 Score: 799 bits (2064), Expect = 1.800e-274 Identity = 446/543 (82.14%), Postives = 458/543 (84.35%), Query Frame = 1
Query: 1 NPVDPSESMSSSSRXXXSPLHPVLQVKGVGQVPHMAAGDPGNKNTAGGWIGEKGRGETPLASSRSRASDASSVDMDGLSALXXXXXXXXXXXXXXXXXXXXRTSSTTGGVPRSRKRGGKEGQAGGRSGVFQSISTAERIKAEARREEALLEPLVCPRQQLLKNILESSVNLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTTVSTKGQALALAAKSAKERDANPGAIRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAASVHRPPSLPDKSTNAISSPLPSLNTPPSSLLSPATKVKKTATALTPDSVEVGRCDPSVADEADDRSNARSGVSMQSPGYHDESNGAGAGRPLGVAVGTGESSERVVAXXXXXXXXXXXXXXXXXXXXXGGRKDVSNGGGLPVGTASLLSVHPVVPSGDINSQEERRKDGDRRQRRRHRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQ 1629
NP D SE XXX LHPVLQVKGVGQVPHMAAGDPG+KNTAG WIGEKG GE PLASSRSRASDASSVDMDGLSAL R +S TGGVPRSRKRGGKE QAGGRSG FQS STAERIKAEARR EALLEPLVCPRQQLLKNILE+S LQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTT+STKGQALA+AAKSAKERDANPGA+RGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAAS PPSLPD STNA SSPLPS NTPPSSLLSPATK KKTATALTPDSVE GR DPSVADEADDRSNAR GVS+QSPGYHDES A AGRP + RVVA XXXXXXXXGGR DVSNGG LPVGTAS SVHP++P GDINSQEERRKDGDRRQRRRHRVIRGNVKASFVG NVEGLPVWGALDAIAGSSLLVDCRTPAQWRAET+PPT+Q
Sbjct: 357 NPADSSEXXXXXXXXXXXXLHPVLQVKGVGQVPHMAAGDPGDKNTAGSWIGEKGMGEIPLASSRSRASDASSVDMDGLSALSSLRSRSSVRSKGSESSFNSRATSKTGGVPRSRKRGGKERQAGGRSGAFQSTSTAERIKAEARRGEALLEPLVCPRQQLLKNILETSETLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTTISTKGQALAIAAKSAKERDANPGAVRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAASARPPPSLPDNSTNAFSSPLPSSNTPPSSLLSPATKAKKTATALTPDSVEGGRRDPSVADEADDRSNARRGVSVQSPGYHDESKRAAAGRPHSI---------RVVAAGGERQVGEEKGSXXXXXXXXGGRNDVSNGGRLPVGTASPSSVHPIIPIGDINSQEERRKDGDRRQRRRHRVIRGNVKASFVGQNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETFPPTQQ 890
BLAST of mRNA_Ecto-sp13_S_contig15880.4317.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE) HSP 1 Score: 703 bits (1815), Expect = 3.380e-237 Identity = 408/525 (77.71%), Postives = 419/525 (79.81%), Query Frame = 1
Query: 73 QVKGVGQVPHMAAGDPGNKNTAGGWIGEKGRGETPLASSRSRASDASSVDMDGLSALXXXXXXXXXXXXXXXXXXXXRTSSTTGGVPRSRKRGGKEGQAGGRSGVFQSISTAERIKAEARREEALLEPLVCPRQQLLKNILESSVNLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTTVSTKGQALALAAKSAKERDANPGAIRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAASVHRPPSLPDKSTNAISSPLPSLNTPPSSLLSPATKVKKTATALTPDSVEVGRCDPSVADEADDRSNARSGVSMQSPGYHDESNGAGAGRPLGVAVGTGESSERVVAXXXXXXXXXXXXXXXXXXXXXGGRKDVSNGGGLPVGTASLLSVHPVVPSGDINSQEERRKDGDRRQRRRHRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQVMLGVA 1647
QVKGVGQVPHMAAGDPG+KNT GGWIGE GRGE PLASSRSRAS ASSVDMDGLSAL R +S TGGVPRSRKRGGKE QAGGRSGVFQS STAERIKAEAR YQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTTV TKGQALALAAKSAKERDANPGA+RGPKPP MTQLTML+THISILVVSDAFTGLSHADRLALVFTTLHNELAAS H PPSLPD TNA SSPLP NTPPSSLL ATK KKT TAL PD+VE GR D SVAD D R NAR GVS+QSPG+HDESN AGAGRP GVAVGTGE SERVVA XXXXXXXXXXXXXXXX GGR DVSNG GLPVGTASL SVHPV+P+G INSQEER KDGD+RQRRRHRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQ + G A
Sbjct: 464 QVKGVGQVPHMAAGDPGDKNTPGGWIGEMGRGEIPLASSRSRASGASSVDMDGLSALSSLRSRSSARSKGSESSFNSRATSKTGGVPRSRKRGGKERQAGGRSGVFQSTSTAERIKAEAR----------------------------------------YQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKSVGTTVLTKGQALALAAKSAKERDANPGAVRGPKPPMMTQLTMLETHISILVVSDAFTGLSHADRLALVFTTLHNELAASAHPPPSLPDVRTNAFSSPLPFSNTPPSSLLPQATKAKKTPTALAPDAVEEGRGDHSVADGTDGRPNARRGVSVQSPGHHDESNRAGAGRPHGVAVGTGEKSERVVAAGXXXXXXXXXXXXXXXXIEEGGRNDVSNGRGLPVGTASLSSVHPVIPTGGINSQEERGKDGDQRQRRRHRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQELWGAA 948
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 805.1 |
| Seed ortholog evalue | 2.1e-230 |
| Seed eggNOG ortholog | 2880.D7FMH0 |
| Model size | 1653 |
| KEGG ko | ko:K16743 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG free text desc. | Short calmodulin-binding motif containing conserved Ile and Gln residues. |
| EggNOG OGs | 29C0P@1,2RJ48@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-23_000260.1 |
| Cds size | 1629 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462838.9068327-CDS-Ecto-sp13_S_contig15880:730..1520 | 1681462838.9068327-CDS-Ecto-sp13_S_contig15880:730..1520 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15880 731..1520 - |
| 1681462838.916977-CDS-Ecto-sp13_S_contig15880:1977..2105 | 1681462838.916977-CDS-Ecto-sp13_S_contig15880:1977..2105 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15880 1978..2105 - |
| 1681462838.925928-CDS-Ecto-sp13_S_contig15880:2435..2619 | 1681462838.925928-CDS-Ecto-sp13_S_contig15880:2435..2619 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15880 2436..2619 - |
| 1681462838.934629-CDS-Ecto-sp13_S_contig15880:2939..3059 | 1681462838.934629-CDS-Ecto-sp13_S_contig15880:2939..3059 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15880 2940..3059 - |
| 1681462838.9436367-CDS-Ecto-sp13_S_contig15880:3610..4017 | 1681462838.9436367-CDS-Ecto-sp13_S_contig15880:3610..4017 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15880 3611..4017 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462838.9528813-UTR-Ecto-sp13_S_contig15880:4017..4041 | 1681462838.9528813-UTR-Ecto-sp13_S_contig15880:4017..4041 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig15880 4018..4041 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15880.4317.1 >prot_Ecto-sp13_S_contig15880.4317.1 ID=prot_Ecto-sp13_S_contig15880.4317.1|Name=mRNA_Ecto-sp13_S_contig15880.4317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=543bp
MSSSSRSSRSPLHPVLQVKGVGQVPHMAAGDPGNKNTAGGWIGEKGRGET PLASSRSRASDASSVDMDGLSALSSLRSRSSARSKGSESSFNSRTSSTTG GVPRSRKRGGKEGQAGGRSGVFQSISTAERIKAEARREEALLEPLVCPRQ QLLKNILESSVNLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTK RWEASVYMLGDRPSDGKLVPILTPIKSVGTTVSTKGQALALAAKSAKERD ANPGAIRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLH NELAASVHRPPSLPDKSTNAISSPLPSLNTPPSSLLSPATKVKKTATALT PDSVEVGRCDPSVADEADDRSNARSGVSMQSPGYHDESNGAGAGRPLGVA VGTGESSERVVAAGGKRQAEKEEGSSGGGGIEEGGRKDVSNGGGLPVGTA SLLSVHPVVPSGDINSQEERRKDGDRRQRRRHRVIRGNVKASFVGPNVEG LPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQVMLGVAA* back to topmRNA from alignment at Ecto-sp13_S_contig15880:731..4041- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig15880.4317.1 ID=mRNA_Ecto-sp13_S_contig15880.4317.1|Name=mRNA_Ecto-sp13_S_contig15880.4317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15880:731..4041- (Ectocarpus species13 EcNAP12_S_4_19m) AATCCGGTAGATCCTTCTGAATCCATGTCATCGTCGTCCCGTTCAAGCAG
GTCACCCCTTCATCCAGTGCTCCAAGTCAAAGGGGTGGGTCAAGTCCCCC
ACATGGCGGCCGGTGACCCCGGCAACAAGAACACGGCAGGGGGTTGGATT
GGGGAAAAGGGTAGGGGCGAAACACCACTCGCTTCGTCGCGATCGAGAGC
TTCAGACGCGAGCTCCGTGGACATGGACGGGTTGTCGGCTTTGTCATCCC
TACGATCGAGAAGCTCGGCTAGGTCGAAAGGATCGGAATCCAGTTTTAAT
AGTCGAACGTCCAGTACAACAGGTGGAGTACCGCGGAGCAGAAAGCGCGG
CGGGAAGGAGGGGCAGGCGGGAGGCAGAAGCGGCGTGTTTCAGTCGATAT
CTACAGCAGAGCGCATCAAGGCAGAGGCAAGGTAAAACAGCTGGCAACAA
CTCAATGGACGTCTTCGAACATACCTCTCCGCACTACCGTGGAGTAGGCA
CAGCGTTGCGCCGCAAAGGCAGGACCGACTTTGCAAGACTTGTCCGGGCG
CTGCATTGCAGCAAAGAACCGCGATTCGGGTACCGACAAGCGGTGGAAAT
TTTGTTAGAATCGGGCTAGTGCTCCTCCTGCTGCTGGTTGCGACGGTAGC
TGCCAGTAGATACAGTCGTGTTGAAGCCCAACAAAGTACTTCGAAAGGTA
CTTCGGTCACCGAACAGGGTGTGATTCTGGCAGACCCTATCGCAGTGCAA
CGACGACTTTGTCTCCGAACAAACTAACGTAATGTCAAAATTTCCCGGCA
TCCACGGTATCATGGAGGGCGACATTTTGTCCAGATATTCAACGGCCGTA
CACGCGCTCCACACATTGTACCCTAACCGCCTTACCCTTTCACCCCTGTT
CCTTTAGCACCGTCGCCCCATTGCCATAATGGTTGCTTGATGGTAATTCC
CCCTGTTTCCCGCTACCGCCACCTACCTTCAGACGCGAGGAGGCCTTGCT
CGAGCCGCTAGTTTGTCCTCGACAGCAGCTTCTCAAGAACATTTTGGAGT
CGAGTGTGAACTTACAACCGTTGGCCGTACGGCTGACAAACCTCAGCTAT
TGGTGAGAAAAAGCGCAGTTTCTTGCAGCTAACATAAATCGTGGCGACGT
TTAGCTAGTGTCGCGCTCACAACGTGGGCAACTGTTTCAGCGACCGACCA
AGTGTTCGCACATCACCCTCTCGGTTGGATGTGTATCTTGTACTGCCGAA
TTGTCTCTTTTCTCAGGTCTTTTTTAACACCCTGTTTCTGCTCTTCGCCC
ACCTCCACCTTAGCCCCGTCGCCTACGTATGCATGTCGCCCACCGCAGAA
TTTCCCATGAGAACGCAAAAATTGCCAAGCGCAACCGCCCATGCCTCGGA
ACGGTTCCGCCGCTGCTTCCAGGTACCAACAGCGACGACTTCTCGGGGGT
GCGCGACATATGCACCGGGGAGCCGTGTTCGACCCTCGCACCAAGCGTTG
GGAGGCGTCCGTATACATGCTCGGAGACAGGCCTTCCGACGGAAAGCTGG
TGCCGATCCTTACGCCCATCAAGTCCGTCGGGACAACGGTTTCAACGAAG
GGTCAGGTGAGACGCCCCCGTTGCTCTTCGGAGAAAATTGCTTTGGCATG
GTGTACTTGTGAGCTTGGTCCGCGTTTTCAATCGGATCGGCACGATTCTG
AACAAGTCAACACCTCGTCTTGGATGACTTGCGTTACACCTGTTGGTAGC
TCTGGTTCCGCTCCTGACTGGGAAGCTAACGTTTCGCAATACTTGTAGCA
CCGAAAACAATGTTATCACCACTCGACACCAACACCTCAAGCACACGTGT
TCTCGAGACTTTGCTGTTTGTGATAACATTTTCTGCCCAATACCAACAAC
CAACCCGTGTGCGGCAACGCTTCCCGTGATCCACAGGCACTCGCCCTCGC
AGCCAAATCGGCGAAAGAGAGGGACGCGAACCCTGGCGCCATAAGAGGAC
CGAAACCTCCGGGGATGACGCAACTCACGATGCTGCAGACCCACATATCG
ATCTTGGTTGTCAGGTGACCACAGCGATGCCCAATTAGTACTCCCAGCGC
TCTACTTGGCAAGAGCGTGTGTTCCGTAGACCACGCTTGAGTGCTTGAGG
GCTTTGCAAACGCCTGTCAGCATCTCGGCGGCACCTTGTGTCCTACTTTC
TAGCTAGTCGTGGGTAACCAAAATTTTCCCGGCGCTGTCCACAACTCCTT
CTACTTCATGACCCCCCGGCCACCGCTCATCGCATTGTTAACTCGTGACT
CTATCCCTGATCTGTTTGTTTGGGGAAACAGTTACGCCACCGGCAGGGTT
CGGTGCGTACTGACTCCCTTCCTCTCGTTCTTGAACGCACATATCAGAAG
CATAGCCTCTACATCTTTTTTCTGAGTAGCACCCGAGTCTGAACCCCCTC
TCTTCCCCTCGCCCCACCGCCTCGTACCGCCGCCACGTACCGCCACCGCC
GCTTGTCTCTTTTCTTCGCAGCGATGCGTTCACGGGGCTGTCGCATGCTG
ACCGCCTCGCTCTCGTCTTCACGACTCTTCACAACGAGCTCGCCGCCTCC
GTCCACCGACCGCCTTCTCTTCCTGACAAAAGTACCAACGCAATCTCCTC
CCCACTTCCTTCTTTAAACACACCACCCTCATCACTCCTGTCCCCAGCAA
CCAAAGTCAAGAAAACAGCAACAGCGCTGACGCCCGATTCGGTGGAGGTG
GGCAGGTGCGACCCCAGCGTTGCTGACGAAGCAGATGACCGCTCGAATGC
AAGAAGCGGTGTGTCCATGCAGAGCCCAGGATACCATGATGAAAGCAATG
GGGCGGGCGCAGGTCGACCCCTCGGCGTAGCGGTAGGCACGGGGGAAAGT
AGCGAGAGAGTAGTGGCGGCGGGCGGGAAGAGACAAGCTGAAAAGGAAGA
AGGATCGAGTGGTGGTGGAGGAATAGAAGAGGGGGGACGAAAGGATGTAT
CGAACGGCGGCGGGCTCCCCGTTGGAACAGCATCGCTCTTGAGTGTTCAT
CCCGTCGTCCCCAGCGGCGACATCAACAGTCAGGAAGAGCGCCGAAAGGA
CGGCGATCGACGGCAGCGGCGGCGTCATCGAGTCATCCGAGGAAACGTGA
AGGCCAGCTTCGTGGGGCCAAACGTAGAAGGGTTGCCCGTGTGGGGAGCG
CTAGACGCGATAGCTGGTTCTTCGCTGCTGGTAGACTGCAGAACTCCGGC
GCAGTGGCGAGCCGAAACTTATCCGCCAACAGAGCAGGTGATGCTTGGTG
TGGCAGCGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig15880:731..4041- >mRNA_Ecto-sp13_S_contig15880.4317.1 ID=mRNA_Ecto-sp13_S_contig15880.4317.1|Name=mRNA_Ecto-sp13_S_contig15880.4317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15880:731..4041- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCATCGTCGTCCCGTTCAAGCAGGTCACCCCTTCATCCAGTGCTCCA AGTCAAAGGGGTGGGTCAAGTCCCCCACATGGCGGCCGGTGACCCCGGCA ACAAGAACACGGCAGGGGGTTGGATTGGGGAAAAGGGTAGGGGCGAAACA CCACTCGCTTCGTCGCGATCGAGAGCTTCAGACGCGAGCTCCGTGGACAT GGACGGGTTGTCGGCTTTGTCATCCCTACGATCGAGAAGCTCGGCTAGGT CGAAAGGATCGGAATCCAGTTTTAATAGTCGAACGTCCAGTACAACAGGT GGAGTACCGCGGAGCAGAAAGCGCGGCGGGAAGGAGGGGCAGGCGGGAGG CAGAAGCGGCGTGTTTCAGTCGATATCTACAGCAGAGCGCATCAAGGCAG AGGCAAGACGCGAGGAGGCCTTGCTCGAGCCGCTAGTTTGTCCTCGACAG CAGCTTCTCAAGAACATTTTGGAGTCGAGTGTGAACTTACAACCGTTGGC CGTACGGCTGACAAACCTCAGCTATTGGTACCAACAGCGACGACTTCTCG GGGGTGCGCGACATATGCACCGGGGAGCCGTGTTCGACCCTCGCACCAAG CGTTGGGAGGCGTCCGTATACATGCTCGGAGACAGGCCTTCCGACGGAAA GCTGGTGCCGATCCTTACGCCCATCAAGTCCGTCGGGACAACGGTTTCAA CGAAGGGTCAGGCACTCGCCCTCGCAGCCAAATCGGCGAAAGAGAGGGAC GCGAACCCTGGCGCCATAAGAGGACCGAAACCTCCGGGGATGACGCAACT CACGATGCTGCAGACCCACATATCGATCTTGGTTGTCAGCGATGCGTTCA CGGGGCTGTCGCATGCTGACCGCCTCGCTCTCGTCTTCACGACTCTTCAC AACGAGCTCGCCGCCTCCGTCCACCGACCGCCTTCTCTTCCTGACAAAAG TACCAACGCAATCTCCTCCCCACTTCCTTCTTTAAACACACCACCCTCAT CACTCCTGTCCCCAGCAACCAAAGTCAAGAAAACAGCAACAGCGCTGACG CCCGATTCGGTGGAGGTGGGCAGGTGCGACCCCAGCGTTGCTGACGAAGC AGATGACCGCTCGAATGCAAGAAGCGGTGTGTCCATGCAGAGCCCAGGAT ACCATGATGAAAGCAATGGGGCGGGCGCAGGTCGACCCCTCGGCGTAGCG GTAGGCACGGGGGAAAGTAGCGAGAGAGTAGTGGCGGCGGGCGGGAAGAG ACAAGCTGAAAAGGAAGAAGGATCGAGTGGTGGTGGAGGAATAGAAGAGG GGGGACGAAAGGATGTATCGAACGGCGGCGGGCTCCCCGTTGGAACAGCA TCGCTCTTGAGTGTTCATCCCGTCGTCCCCAGCGGCGACATCAACAGTCA GGAAGAGCGCCGAAAGGACGGCGATCGACGGCAGCGGCGGCGTCATCGAG TCATCCGAGGAAACGTGAAGGCCAGCTTCGTGGGGCCAAACGTAGAAGGG TTGCCCGTGTGGGGAGCGCTAGACGCGATAGCTGGTTCTTCGCTGCTGGT AGACTGCAGAACTCCGGCGCAGTGGCGAGCCGAAACTTATCCGCCAACAG AGCAGGTGATGCTTGGTGTGGCAGCGTGA back to top
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