mRNA_Ecto-sp13_S_contig15868.4309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE) HSP 1 Score: 154 bits (389), Expect = 6.130e-46 Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 216
IRASNTSGECSF+MEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL
Sbjct: 138 IRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 209
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1Y1YLT0_9FUNG (Mitochondrial inner membrane protease ATP23 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YLT0_9FUNG) HSP 1 Score: 72.8 bits (177), Expect = 3.110e-14 Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDK 207
+RA++ SG+CS+ ME+RRGH K+ Q + CVKRRA LS+K+ P +D A + V F+ C+ DT+P+D+
Sbjct: 117 VRAASLSGDCSWLMELRRGHFKFTKQHQACVKRRAILSLKSNPEFADVAEKAVGVVFESCFNDTKPFDE 185
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A485KW03_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW03_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.570e-13 Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNP 213
IRA+ SG+C +++EV RGH Q +ECV+RRAELS+K P C K V F+ CY DT PY + P
Sbjct: 129 IRAAALSGDCDWHLEVFRGHFNVAKQHQECVRRRAELSLKYNPLCEGKETTCVQKVFETCYKDTWPYGEIP 199
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1D5UPY4_WHEAT (Mitochondrial inner membrane protease ATP23 n=7 Tax=Triticinae TaxID=1648030 RepID=A0A1D5UPY4_WHEAT) HSP 1 Score: 70.1 bits (170), Expect = 4.580e-13 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEY-VNSAFKPCYYDTEPYDK 207
IRA++ SG C + E+ +G LK G + ECVKRRA LSVK P CS+KAAE V + CY D P+DK
Sbjct: 133 IRANHLSGNCHYKRELMKGFLKIKGHEPECVKRRALLSVKNNPHCSEKAAEAAVEKVWDMCYNDPRPFDK 202
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: J3LYZ6_ORYBR (Mitochondrial inner membrane protease ATP23 n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LYZ6_ORYBR) HSP 1 Score: 69.7 bits (169), Expect = 6.530e-13 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
IRA++ SG+C + E+ RG +K G ++ECVKRRA +SV+ P CS+ A + V + ++ CY DT P+D+ P
Sbjct: 134 IRANHLSGDCHYKRELLRGFMKMRGHEQECVKRRALISVRNNPFCSETVAKDAVEAVWETCYNDTRPFDRAP 205
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: C5YAU8_SORBI (Mitochondrial inner membrane protease ATP23 n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5YAU8_SORBI) HSP 1 Score: 69.7 bits (169), Expect = 6.750e-13 Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
IRA++ SG+C + E+ RG +K G ++ECVKRRA LS+K+ P CS+ AA + + + + CY DT P+D+ P
Sbjct: 136 IRANHLSGDCHYKRELLRGFMKIRGHEQECVKRRALLSLKSNPYCSEAAAKDAMEAVWDICYNDTRPFDRAP 207
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: B4FRU3_MAIZE (Mitochondrial inner membrane protease ATP23 n=4 Tax=Zea mays TaxID=4577 RepID=B4FRU3_MAIZE) HSP 1 Score: 68.9 bits (167), Expect = 1.210e-12 Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
IRA++ SG+C + E+ RG +K G + ECVKRRA +SVK P CS+ AA + +++ + CY DT P+D+ P
Sbjct: 130 IRANHLSGDCHYKRELLRGFMKIKGHEPECVKRRALMSVKNNPYCSEGAAKDAIDAVWDICYNDTRPFDRAP 201
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A835BKQ9_9POAL (Mitochondrial inner membrane protease ATP23 n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835BKQ9_9POAL) HSP 1 Score: 68.9 bits (167), Expect = 1.330e-12 Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
IRA++ SG+C + E+ RG +K G +++CVKRRA +SVK P CS+ AA + V + + CY DT P+D+ P
Sbjct: 136 IRANHLSGDCHYKRELLRGFMKIRGHEQDCVKRRALMSVKNNPYCSEAAAKDAVEAVWHICYNDTRPFDRAP 207
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1B7N255_9AGAM (Mitochondrial inner membrane protease ATP23 n=1 Tax=Rhizopogon vinicolor AM-OR11-026 TaxID=1314800 RepID=A0A1B7N255_9AGAM) HSP 1 Score: 68.9 bits (167), Expect = 1.590e-12 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA--EYVNSAFKPCYYDTEPYDK 207
IRA++ SG+C F EV RG + + Q + CV+RRA LSV+A P CSD+AA VN ++ C+ DT P+D+
Sbjct: 147 IRANSLSGDCRFMREVGRGFVSFSKQHQACVRRRAILSVRANPMCSDEAAAERAVNEVWESCFNDTRPFDE 217
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A0A9PM08_ARUDO (Mitochondrial inner membrane protease ATP23 n=4 Tax=PACMAD clade TaxID=147370 RepID=A0A0A9PM08_ARUDO) HSP 1 Score: 68.6 bits (166), Expect = 1.750e-12 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
IRA++ SG+C + E+ RG +K G +++CVKRRA +SVK P CS+ AA + + + + CY DT P+D+ P
Sbjct: 132 IRANHLSGDCHYKRELLRGFMKIRGHEQDCVKRRALMSVKNNPYCSEAAAKDAIEAVWDICYNDTRPFDRAP 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15868.4309.1 >prot_Ecto-sp13_S_contig15868.4309.1 ID=prot_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAback to top mRNA from alignment at Ecto-sp13_S_contig15868:753..1266+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15868.4309.1 ID=mRNA_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=514bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15868:753..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15868:753..1266+ >mRNA_Ecto-sp13_S_contig15868.4309.1 ID=mRNA_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15868:753..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |