mRNA_Ecto-sp13_S_contig15868.4309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15868.4309.1
Unique NamemRNA_Ecto-sp13_S_contig15868.4309.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 6.130e-46
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 216
            IRASNTSGECSF+MEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL
Sbjct:  138 IRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 209          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1Y1YLT0_9FUNG (Mitochondrial inner membrane protease ATP23 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YLT0_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 3.110e-14
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDK 207
            +RA++ SG+CS+ ME+RRGH K+  Q + CVKRRA LS+K+ P  +D A + V   F+ C+ DT+P+D+
Sbjct:  117 VRAASLSGDCSWLMELRRGHFKFTKQHQACVKRRAILSLKSNPEFADVAEKAVGVVFESCFNDTKPFDE 185          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A485KW03_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW03_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.570e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNP 213
            IRA+  SG+C +++EV RGH     Q +ECV+RRAELS+K  P C  K    V   F+ CY DT PY + P
Sbjct:  129 IRAAALSGDCDWHLEVFRGHFNVAKQHQECVRRRAELSLKYNPLCEGKETTCVQKVFETCYKDTWPYGEIP 199          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1D5UPY4_WHEAT (Mitochondrial inner membrane protease ATP23 n=7 Tax=Triticinae TaxID=1648030 RepID=A0A1D5UPY4_WHEAT)

HSP 1 Score: 70.1 bits (170), Expect = 4.580e-13
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEY-VNSAFKPCYYDTEPYDK 207
            IRA++ SG C +  E+ +G LK  G + ECVKRRA LSVK  P CS+KAAE  V   +  CY D  P+DK
Sbjct:  133 IRANHLSGNCHYKRELMKGFLKIKGHEPECVKRRALLSVKNNPHCSEKAAEAAVEKVWDMCYNDPRPFDK 202          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: J3LYZ6_ORYBR (Mitochondrial inner membrane protease ATP23 n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LYZ6_ORYBR)

HSP 1 Score: 69.7 bits (169), Expect = 6.530e-13
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
            IRA++ SG+C +  E+ RG +K  G ++ECVKRRA +SV+  P CS+  A + V + ++ CY DT P+D+ P
Sbjct:  134 IRANHLSGDCHYKRELLRGFMKMRGHEQECVKRRALISVRNNPFCSETVAKDAVEAVWETCYNDTRPFDRAP 205          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: C5YAU8_SORBI (Mitochondrial inner membrane protease ATP23 n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5YAU8_SORBI)

HSP 1 Score: 69.7 bits (169), Expect = 6.750e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
            IRA++ SG+C +  E+ RG +K  G ++ECVKRRA LS+K+ P CS+ AA + + + +  CY DT P+D+ P
Sbjct:  136 IRANHLSGDCHYKRELLRGFMKIRGHEQECVKRRALLSLKSNPYCSEAAAKDAMEAVWDICYNDTRPFDRAP 207          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: B4FRU3_MAIZE (Mitochondrial inner membrane protease ATP23 n=4 Tax=Zea mays TaxID=4577 RepID=B4FRU3_MAIZE)

HSP 1 Score: 68.9 bits (167), Expect = 1.210e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
            IRA++ SG+C +  E+ RG +K  G + ECVKRRA +SVK  P CS+ AA + +++ +  CY DT P+D+ P
Sbjct:  130 IRANHLSGDCHYKRELLRGFMKIKGHEPECVKRRALMSVKNNPYCSEGAAKDAIDAVWDICYNDTRPFDRAP 201          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A835BKQ9_9POAL (Mitochondrial inner membrane protease ATP23 n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835BKQ9_9POAL)

HSP 1 Score: 68.9 bits (167), Expect = 1.330e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
            IRA++ SG+C +  E+ RG +K  G +++CVKRRA +SVK  P CS+ AA + V + +  CY DT P+D+ P
Sbjct:  136 IRANHLSGDCHYKRELLRGFMKIRGHEQDCVKRRALMSVKNNPYCSEAAAKDAVEAVWHICYNDTRPFDRAP 207          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A1B7N255_9AGAM (Mitochondrial inner membrane protease ATP23 n=1 Tax=Rhizopogon vinicolor AM-OR11-026 TaxID=1314800 RepID=A0A1B7N255_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 1.590e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA--EYVNSAFKPCYYDTEPYDK 207
            IRA++ SG+C F  EV RG + +  Q + CV+RRA LSV+A P CSD+AA    VN  ++ C+ DT P+D+
Sbjct:  147 IRANSLSGDCRFMREVGRGFVSFSKQHQACVRRRAILSVRANPMCSDEAAAERAVNEVWESCFNDTRPFDE 217          
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Match: A0A0A9PM08_ARUDO (Mitochondrial inner membrane protease ATP23 n=4 Tax=PACMAD clade TaxID=147370 RepID=A0A0A9PM08_ARUDO)

HSP 1 Score: 68.6 bits (166), Expect = 1.750e-12
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA-EYVNSAFKPCYYDTEPYDKNP 213
            IRA++ SG+C +  E+ RG +K  G +++CVKRRA +SVK  P CS+ AA + + + +  CY DT P+D+ P
Sbjct:  132 IRANHLSGDCHYKRELLRGFMKIRGHEQDCVKRRALMSVKNNPYCSEAAAKDAIEAVWDICYNDTRPFDRAP 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15868.4309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KCH1_9PHAE6.130e-4698.61Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A1Y1YLT0_9FUNG3.110e-1447.83Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A485KW03_9STRA1.570e-1347.89Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A1D5UPY4_WHEAT4.580e-1351.43Mitochondrial inner membrane protease ATP23 n=7 Ta... [more]
J3LYZ6_ORYBR6.530e-1344.44Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
C5YAU8_SORBI6.750e-1345.83Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
B4FRU3_MAIZE1.210e-1245.83Mitochondrial inner membrane protease ATP23 n=4 Ta... [more]
A0A835BKQ9_9POAL1.330e-1245.83Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A1B7N255_9AGAM1.590e-1247.89Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A0A9PM08_ARUDO1.750e-1244.44Mitochondrial inner membrane protease ATP23 n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15868contigEcto-sp13_S_contig15868:753..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score158.3
Seed ortholog evalue1.4e-36
Seed eggNOG ortholog2880.D8LT69
Model size219
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons2
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsKOG3314@1,KOG3314@2759
Ec32 ortholog descriptionPeptidase M76, ATP23
Ec32 orthologEc-12_005480.1
Cds size219
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.3969388-CDS-Ecto-sp13_S_contig15868:752..8961681462838.3969388-CDS-Ecto-sp13_S_contig15868:752..896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15868 753..896 +
1681462838.4145188-CDS-Ecto-sp13_S_contig15868:1191..12661681462838.4145188-CDS-Ecto-sp13_S_contig15868:1191..1266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15868 1192..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15868.4309.1prot_Ecto-sp13_S_contig15868.4309.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15868 753..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15868.4309.1

>prot_Ecto-sp13_S_contig15868.4309.1 ID=prot_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
IRASNTSGECSFNMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAA
EYVNSAFKPCYYDTEPYDKNPL*
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mRNA from alignment at Ecto-sp13_S_contig15868:753..1266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15868.4309.1 ID=mRNA_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=514bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15868:753..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCGTGCTTCCAACACTAGCGGGGAGTGTTCCTTTAACATGGAGGTACG ACGGGGCCACCTCAAGTGGGGGGGGCAGCAGAAAGAGTGCGTTAAGCGGA GAGCGGAGTTGTCAGTGAAGGCAACACCCGGGTGTTCGGATAAGGTGAGT CAGTCGGTGAAGCGAAGCTCGCGTTGGAAGTGGGAGTGGGGAAGGGGGGG TCACAACGAGCTGCCGTCTCAAACAGGTGGTTGTAATCGACAGCAGACAG CAGCAGTGAATAGCACGTTCACGTGCTTGTTCAATGATTTGGGCAATGGC GCCAAGTGGTGGCGGCATTCCGTAAAGCTCCCGCCTCTTTCATGTTCGTG TGGACACCGCTGATGGTACCTTCTCTACCTCCCCCTCTTGCCTCCTCGTC GATTTGCTTTTTCCTCACATCCGACGACGACGACGACAGGCAGCGGAGTA CGTGAACTCTGCCTTCAAGCCATGTTACTACGACACCGAGCCATACGACA AGAATCCGTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15868:753..1266+

>mRNA_Ecto-sp13_S_contig15868.4309.1 ID=mRNA_Ecto-sp13_S_contig15868.4309.1|Name=mRNA_Ecto-sp13_S_contig15868.4309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15868:753..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCGTGCTTCCAACACTAGCGGGGAGTGTTCCTTTAACATGGAGGTACG
ACGGGGCCACCTCAAGTGGGGGGGGCAGCAGAAAGAGTGCGTTAAGCGGA
GAGCGGAGTTGTCAGTGAAGGCAACACCCGGGTGTTCGGATAAGGCAGCG
GAGTACGTGAACTCTGCCTTCAAGCCATGTTACTACGACACCGAGCCATA
CGACAAGAATCCGTTGTAA
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