prot_Ecto-sp13_S_contig1579.4262.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1579.4262.1
Unique Nameprot_Ecto-sp13_S_contig1579.4262.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length143
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Match: D8LDS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.640e-37
Identity = 100/146 (68.49%), Postives = 105/146 (71.92%), Query Frame = 0 
Query:    1 MKLFFCPKPATALLVCCALVATVSAQPGTPIPTSMDTTVTDGTT-AMMETPAPTSMDGMTMXXXXXXXXXXXXXXXXXXXXXXXXTNTTMDTPTPTM---HGETMGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 142
            MKLFFCPKPATAL+V CALVA VSAQ  TPIPTSMDTTVTDGTT A M+TPAPT++     XXXXXXXX                   T+   T  M   H ETMGPTA  DAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL
Sbjct:    1 MKLFFCPKPATALIVFCALVAIVSAQE-TPIPTSMDTTVTDGTTTATMDTPAPTNVXXXXXXXXXXXXX-------------------TVHVHTDDMDHDHEETMGPTATGDAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Match: A0A6H5K6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.290e-22
Identity = 95/147 (64.63%), Postives = 102/147 (69.39%), Query Frame = 0 
Query:    1 MKLFFCPKPATALLVCCALVATVSAQP---GTPIPTSMDTTVTDGT--TAMMETPAPTSMDGMTMXXXXXXXXXXXXXXXXXXXXXXXXTNTTMDTPTPTMHGETMGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 142
            MKLFFCPKPAT LLVCCALVA VSAQ    GTP+PT            TA M+TPAP SM+G   XXXXXXXXXXXXXXXXXXXX        MD      H ET+ PT A + E DGA A+GGGAR+TAVVSCALAALAAGA WGL
Sbjct:    1 MKLFFCPKPATTLLVCCALVAIVSAQDNQQGTPMPTXXXXXXXXXXXXTATMDTPAPISMNGDXXXXXXXXXXXXXXXXXXXXXXSVHEHTDDMD------H-ETVSPTEAGE-EADGATAMGGGARVTAVVSCALAALAAGALWGL 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDS1_ECTSI2.640e-3768.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6K8_9PHAE1.290e-2264.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.892

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1579contigEcto-sp13_S_contig1579:2947..5790 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1579.4262.1mRNA_Ecto-sp13_S_contig1579.4262.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1579 1539..5844 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1579.4262.1 ID=prot_Ecto-sp13_S_contig1579.4262.1|Name=mRNA_Ecto-sp13_S_contig1579.4262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MKLFFCPKPATALLVCCALVATVSAQPGTPIPTSMDTTVTDGTTAMMETP
APTSMDGMTMDTPAPTSMDGMTMDTPAPTSMDGMTNTTMDTPTPTMHGET
MGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL*
back to top