mRNA_Ecto-sp13_S_contig1579.4262.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1579.4262.1
Unique NamemRNA_Ecto-sp13_S_contig1579.4262.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Match: D8LDS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.550e-32
Identity = 100/146 (68.49%), Postives = 105/146 (71.92%), Query Frame = 1 
Query:   55 MKLFFCPKPATALLVCCALVATVSAQPGTPIPTSMDTTVTDGTT-AMMETPAPTSMDGMTMXXXXXXXXXXXXXXXXXXXXXXXXTNTTMDTPTPTM---HGETMGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 480
            MKLFFCPKPATAL+V CALVA VSAQ  TPIPTSMDTTVTDGTT A M+TPAPT++     XXXXXXXX                   T+   T  M   H ETMGPTA  DAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL
Sbjct:    1 MKLFFCPKPATALIVFCALVAIVSAQE-TPIPTSMDTTVTDGTTTATMDTPAPTNVXXXXXXXXXXXXX-------------------TVHVHTDDMDHDHEETMGPTATGDAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Match: A0A6H5K6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.820e-19
Identity = 95/147 (64.63%), Postives = 102/147 (69.39%), Query Frame = 1 
Query:   55 MKLFFCPKPATALLVCCALVATVSAQP---GTPIPTSMDTTVTDGT--TAMMETPAPTSMDGMTMXXXXXXXXXXXXXXXXXXXXXXXXTNTTMDTPTPTMHGETMGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL 480
            MKLFFCPKPAT LLVCCALVA VSAQ    GTP+PT            TA M+TPAP SM+G   XXXXXXXXXXXXXXXXXXXX        MD      H ET+ PT A + E DGA A+GGGAR+TAVVSCALAALAAGA WGL
Sbjct:    1 MKLFFCPKPATTLLVCCALVAIVSAQDNQQGTPMPTXXXXXXXXXXXXTATMDTPAPISMNGDXXXXXXXXXXXXXXXXXXXXXXSVHEHTDDMD------H-ETVSPTEAGE-EADGATAMGGGARVTAVVSCALAALAAGALWGL 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1579.4262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDS1_ECTSI1.550e-3268.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6K8_9PHAE2.820e-1964.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1579contigEcto-sp13_S_contig1579:1539..5844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1891
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003120.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.6638086-UTR-Ecto-sp13_S_contig1579:1538..29461681462834.6638086-UTR-Ecto-sp13_S_contig1579:1538..2946Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1579 1539..2946 -
1681462834.7032733-UTR-Ecto-sp13_S_contig1579:5790..58441681462834.7032733-UTR-Ecto-sp13_S_contig1579:5790..5844Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1579 5791..5844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.6832073-CDS-Ecto-sp13_S_contig1579:2946..33041681462834.6832073-CDS-Ecto-sp13_S_contig1579:2946..3304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1579 2947..3304 -
1681462834.6919315-CDS-Ecto-sp13_S_contig1579:5719..57901681462834.6919315-CDS-Ecto-sp13_S_contig1579:5719..5790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1579 5720..5790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1579.4262.1prot_Ecto-sp13_S_contig1579.4262.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1579 2947..5790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1579.4262.1

>prot_Ecto-sp13_S_contig1579.4262.1 ID=prot_Ecto-sp13_S_contig1579.4262.1|Name=mRNA_Ecto-sp13_S_contig1579.4262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MKLFFCPKPATALLVCCALVATVSAQPGTPIPTSMDTTVTDGTTAMMETP
APTSMDGMTMDTPAPTSMDGMTMDTPAPTSMDGMTNTTMDTPTPTMHGET
MGPTAAADAEGDGAAAIGGGARMTAVVSCALAALAAGAAWGL*
back to top

mRNA from alignment at Ecto-sp13_S_contig1579:1539..5844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1579.4262.1 ID=mRNA_Ecto-sp13_S_contig1579.4262.1|Name=mRNA_Ecto-sp13_S_contig1579.4262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1579:1539..5844- (Ectocarpus species13 EcNAP12_S_4_19m)
TATCCATCCTCACACCTGGCAGCCTTCTCTTCAATCCCCTCTCCATCCAC
CACCATGAAGCTGTTCTTTTGCCCCAAGCCCGCCACCGCTCTCCTGGTGT
GCTGCGCCCTTGTGGCAACCGTGAGGTGAGAGTTTCGCTTCTCTTCTCTC
CGCGCCTCGTTATTTTTTTTTGGTCGTCCGCGCGCCGGGGGTGGCCTTGT
GTCCATCCGCGAACTGGTGTTCTGTTTTTGCAGCGCGCGATGTCCGCTTA
CGCGAGTTGTCGCAGGACCGTGCTTGCGGCATCTAAACAAGGGTAGCTGG
CATTGGGTAGGCGTGGTGCTCTTGTGTCAGGAGGAGAGGCCACATCCTCT
CTCCGATATGTTTCGTGTCCGAACCTCTCTGCTGTTCCTGCGGTTCTTTT
TCTTTGGCAACAAAGCAAGTTGTTCGAGAAGAAAGCTGCGCGCCTTTTCT
TGTGTTTCGAACAAGCGGCTGTAATCTGTTACCGTTGGATGTCACATCTG
TAGTACCACGACGCCTCGACACAGCGCGACATGATCTTCCCGGGTGCGCC
TCCGTTGTTATCTTTATTTCCTGCGATGGAGTATTATCCCCAAAACCCAG
ACCACGTTTCGCCACCCCAGCTGGTTCGTAGATAGCGTGACGTGTTTTTT
TCAACAGATTTCTCGCGTACTGCCTGCGCTCTTGGATTCCCCACAAAAAA
GAAGTGAAAAAAGTGACGAAAAGCTTCGTGAAGGTCTCCATCCGTCTGTG
TGGTAAGCAGTAGGTAGCTAACCTCTCATCTTCTCCCTCTCGTCAAGCGC
CGAGCTCTGAAGTTGCGTGACATGGAATGACAGCATTTAGCGTAGACAAA
TCAACCCCTCCTCTCCAATAACCGTTGGCCGTGCTCGTGATCACCCTGTG
GTTCCAATCGAGGGCAGCAGCATTCGATTTTTCGAAATCAGCCGATCGAT
CGATGTGATAACTCGACCAAACGCCCCACGATGCGTAGAATTTTACGCGC
TGCAGCAGCAGCCGATTATTTGTAACGTCGTAAGCATGAGAGGCAGGCTT
TCCCGCTACCCAACGCCAGCAGTTGTCTTGTCTCCACAACCTTTCCTCTG
AGCGCGACCGGCTTCCAAGAAGACGATGGTCTACTAGGTGGTATTTAGTA
GACTATTTGTAGATTGGCCTTTCTTCACGAAGACCAGCTTCCAAGAGGAA
ATAGTGGACCCTCGGCCCCATTCCTCTCAAAATTGCTCGATGGTTCGCGT
CAACATGTGTCTTTTTTCCAGACGCGCAAGGACAGCAGTACGGATGTCGT
CAGCACCCCTCCGCGATAAACCCATTTTATCCACATTGGCTAATGCACAC
ATGTATGCATTCGAGCCCCGGTGTACAGAGAGATTCGGTATCATTCATCA
CAGCGATAGTTCGCAGTCTTCCACCAGCCAGTACATGGCTGAAATTGAGA
CGGACTTCTGCCTTGTGTATGGCACCAGGGGGGCCGACATGTAGTGCCTG
CTGCACCTGCGTCGTGCATAGGTCGGCGGCAGCGGCTAATACCGCTTTGC
CTTGATACGCGCGTGTATTTGCTCAAGGCAGTTGGTATGACATGGGTATG
TGAGTATGTTGTTCGAAGCTTCATCAAGTCGTTTACTTGACGTGAGCCCG
ATGCTGCTGTGCGAGCAAGTGATAAAATATCAACCTCACGAGCTAATTAT
TGTAGCAGTCGCGCGTCACGTAGCAACTCCTCCGTAGGCATCTGTTGTCT
GTCTTATCCGGGAAACACCCACCTACAGCAGTGTGTGGTACATGTTAACG
TTTTTTTCTTCTACGTTATCGATGTGTATTACCCAAGAAATCCATCTATC
CACAAATCAGATTCCAGGATAGATTTGTAAGAAGCAGTAACGAACTCATC
GCGTTCCAGGAGCACATTCATGCCACTGCTGTTTCTTGTTTGAAAAACAT
GCATGTTATCCCGAAAAGACGACCATTTCGAGGTTATTACATCACCCCGC
AGCATCAGTTGAAAGTTGAAAGGAATGTGTCGCTGCAGCAGTCGTTTCAG
TGATTCGGGAAGAAAACCTCCCGGAAATATACTGCGCCTTACTTACTCGC
CAATGTATAATGCTCATGTCTTGTTGCTCCAACCCTATAAACACCAGTTT
CTGATTGATTGCCCCCTAGGAGGATTCATCAAAAAACGTACTTATCGTCT
GTTTGAGGCTGTGCACCACGGGAATCGACCACGTTCAAGTACTACGCTAG
TACGAACAGAAGAAGGCACTGGGTCGAGAGAGGAACTTTTTTTTTTGGTG
AAGACAGCTACATGCAAGGCTTCCCCTGGAGTGGGACCACGCCCTTGAAA
AATACAGAATCGAAGGCAAGCGCCGCAGTAGAGATGCGAGGGGGAAATGC
TGTGAGAACTGATGATCGAGTCAAAAAAAAAGAGATCCTCTGCTTGTAGT
ATTTAGTAGGTCTCTGCTTAGGCTGATTCTTGCACCTACCCCCCCCGCTG
TCGTGTACCCCAATTTTTCCGCGGGTCCACCCGCCTTCAGCGCCCAACCA
GGAACTCCCATCCCCACCTCCATGGACACCACCGTCACCGACGGCACCAC
CGCGATGATGGAGACCCCAGCGCCCACCAGCATGGACGGCATGACGATGG
ATACCCCGGCGCCCACCAGCATGGACGGCATGACGATGGATACCCCGGCG
CCCACCAGCATGGACGGCATGACGAACACGACAATGGACACCCCGACGCC
CACCATGCACGGAGAGACGATGGGCCCCACCGCGGCAGCGGACGCAGAGG
GTGACGGCGCGGCTGCGATCGGCGGCGGCGCCAGGATGACCGCCGTCGTT
TCATGCGCGTTGGCCGCCTTGGCGGCTGGTGCCGCGTGGGGCCTGTGAGG
CGGTCATTTTATGTTGGTCGGGCGGCGGATGGAAATCGCAACGGCCGTTC
TCTTGCGCGCGTCGGTTCGTAGGGGCGGGGGAGGCAAGTGATGGCGGCGG
CTTGACGGTTTCGAACGAGCCTTGTTGCCGCCTTTTTTGAAGAGAGTGCG
GTAGGCCGGCCTGGCCGTCTGCATGAAACGCAGGCACCATCGTGACAGGT
GCTCCTGATCCAGGAGCGCGTTTGCCTCCGCAAAAGCGGAGGCTGCTCCC
CGCCGCCCGGACGGCAAGCGTTGTTGTTCTGCGTATGGTTGAGTCGCACA
GGTGCCTCGTGTGTTCGTTATTTTTGGTCTGCGCACGAATTTTCGTCGAG
TTCCTGCGGAGGAATGTATTTCCTGCTGTAATTTTCCCTTGTGGGGCAAG
ATTCTCTTTTCTTCTTCGGGGGGGTATTGTTTTTCGCCGCCGCAGGGAAA
CGAACATCTTCACCCCACTATCAGTAGTCTAGACGCGTGCCTCGTTTTTG
GTGTTGTTGGAACCCTTCTTGTTTGTCACGATGCTTGGAAGTAGATACCC
CTTGGGAGTAAGCTACACAGAAAGAAAGACGTGACTGCCACAGCAAGTTT
TTGAGCGTCCGCTCGATATAAATGTGACATATGGTACATACGTGCTATGT
TGCCCTCTCGAGTGCGCAGCCCGTACGCAGTGATTGCCCACGTTAGTTTT
CGGTTAGCCCGCCTGCCTTGTCCAGGAGGTCAGGGCCTGATTAGTGCGGC
ATGAATATCGTGTTCGGTGGGGGAGAGGTACCTTGTGTGAGATTACGGGG
TACAATATCTGACTGCTCCAGAGAGGTGTTTTTCAATTTGTACTAGTTTT
GGAAAAGGATGGCCCATGCACGTGTGCTTTTGCGTACACGCACGGTACGT
TTTGAGGTGAATTCATTTTCTTTCTTGATGGCGCGCGTCTCTGATCATGA
GGGCACGTGCGTCCTCCAAGAGGGGGGCGCTTATTCACGATGTCAGCACG
TCCCCCAGCAACTCAATGTTGATTCTTCTACCCTAAGTTCGTTGTGTCGT
TCTGCCATGTTGTCTTTCGTTGCTTGTTTTCTCCTGTTGGTCTCGAAGAA
CTTGTCTGGCTTGTCCGGCCTAAACTCACCCGGCAAACAACCTGGTGATG
CTCCAACGTTCCAACGATGTAGGGAGGGGAACAAGAACAGTCTCACTCAC
TAATGTACTAAGGAGCTACGGCAGGCACCGCGTGAAGCAATGTTTTATCA
AGGGCTTCTCTGGCTTTTTATTTTGCGGTTGGATGAGCCGGTATGGTACA
CAGTGCTTGAGCATCAACAGCAAGCCCCCACAAGTTGGTGTGTGTGCGCG
TCCAAAACCTGTATTTTTTTCCTTTCCGCGTTATCCAAGGATCGCAGGTT
TCTCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1579:1539..5844-

>mRNA_Ecto-sp13_S_contig1579.4262.1 ID=mRNA_Ecto-sp13_S_contig1579.4262.1|Name=mRNA_Ecto-sp13_S_contig1579.4262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1579:1539..5844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGTTCTTTTGCCCCAAGCCCGCCACCGCTCTCCTGGTGTGCTG
CGCCCTTGTGGCAACCGTGAGCGCCCAACCAGGAACTCCCATCCCCACCT
CCATGGACACCACCGTCACCGACGGCACCACCGCGATGATGGAGACCCCA
GCGCCCACCAGCATGGACGGCATGACGATGGATACCCCGGCGCCCACCAG
CATGGACGGCATGACGATGGATACCCCGGCGCCCACCAGCATGGACGGCA
TGACGAACACGACAATGGACACCCCGACGCCCACCATGCACGGAGAGACG
ATGGGCCCCACCGCGGCAGCGGACGCAGAGGGTGACGGCGCGGCTGCGAT
CGGCGGCGGCGCCAGGATGACCGCCGTCGTTTCATGCGCGTTGGCCGCCT
TGGCGGCTGGTGCCGCGTGGGGCCTGTGA
back to top