mRNA_Ecto-sp13_S_contig15723.4223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI) HSP 1 Score: 209 bits (531), Expect = 2.080e-60 Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 1
Query: 1 LNSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
LNSVAKARFDDASYYYWRSSTEAFAAAEK+KTK SEKD RK QRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ
Sbjct: 932 LNSVAKARFDDASYYYWRSSTEAFAAAEKDKTKTSEKDIRKAQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 1041
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A7S4D6V4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6V4_HETAK) HSP 1 Score: 102 bits (253), Expect = 9.260e-24 Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAE----KEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V + RF DA+YYY+ E AAE + ++SE +K + +++LA+LY A+ H++SFTTDPFT+LQPE+L QVSR+++N +G + P GISR +TLYTLAKQ
Sbjct: 91 NAVMEGRFKDAAYYYYLLGAECLRAAEVLGEAKGGELSEAARKKALAEYDNYNKLANLYFAYQHIYSFTTDPFTNLQPEMLFQVSRYVLNLMGAEDAPYGISRVNTLYTLAKQ 203
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A7S3XTQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTQ6_HETAK) HSP 1 Score: 102 bits (253), Expect = 2.020e-23 Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAE----KEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V + RF DA+YYY+ E AAE + ++SE +K + +++LA+LY A+ H++SFTTDPFT+LQPE+L QVSR+++N +G + P GISR +TLYTLAKQ
Sbjct: 153 NAVMEGRFKDAAYYYYLLGAECLRAAEVLGEAKGGELSEAARKKALAEYDNYNKLANLYFAYQHIYSFTTDPFTNLQPEMLFQVSRYVLNLMGAEDAPYGISRVNTLYTLAKQ 265
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A7R9U7I4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7I4_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.130e-17 Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 151 RLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
R ADLY+AF + SFT+DPFT L PEVL QV+R+++N LG + P GISR HTLYTLAKQ
Sbjct: 1 RHADLYYAFQRIRSFTSDPFTSLLPEVLFQVARYIINCLGSSPAPYGISRVHTLYTLAKQ 60
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A812QAW2_SYMMI (Ift122 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QAW2_SYMMI) HSP 1 Score: 85.5 bits (210), Expect = 3.550e-17 Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 1 LNSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEP-PRGISRAHTLYTLAKQ 330
LN+V + RF DASYYYW + + + T ++ EH+ ADLY+A+ + S+ TDPFT PE+L QVSRF++NSLG + P GIS+A TLYTLA+Q
Sbjct: 135 LNAVVETRFKDASYYYWLLAKDI------------REGTDSNYQLECEHN--ADLYYAYSSIQSYVTDPFTSQSPELLFQVSRFIINSLGSSGSIPYGISKAATLYTLARQ 231
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A8C2J6U0_CYPCA (Intraflagellar transport protein 122 homolog n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2J6U0_CYPCA) HSP 1 Score: 84.3 bits (207), Expect = 1.010e-16 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V ++RF+DASYYYW S + A ++K +M +K LA+LYH +H VH + ++PF+ PE+L +SRFL ++L + P GIS+ TLY LAKQ
Sbjct: 867 NAVVESRFNDASYYYWMLSMQCLDIAREKKEEMLKK--------FHSFQHLAELYHVYHSVHRYMSEPFSSNMPEILFNISRFLFHNLTR-DAPMGISKVDTLYALAKQ 966
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A8C2J8G4_CYPCA (Intraflagellar transport protein 122 homolog n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2J8G4_CYPCA) HSP 1 Score: 84.3 bits (207), Expect = 1.010e-16 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V ++RF+DASYYYW S + A ++K +M +K LA+LYH +H VH + ++PF+ PE+L +SRFL ++L + P GIS+ TLY LAKQ
Sbjct: 874 NAVVESRFNDASYYYWMLSMQCLDIAREKKEEMLKK--------FHSFQHLAELYHVYHSVHRYMSEPFSSNMPEILFNISRFLFHNLTR-DAPMGISKVDTLYALAKQ 973
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A8C1K7E3_CYPCA (Intraflagellar transport protein 122 homolog n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1K7E3_CYPCA) HSP 1 Score: 84.3 bits (207), Expect = 1.010e-16 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V ++RF+DASYYYW S + A ++K +M +K LA+LYH +H VH + ++PF+ PE+L +SRFL ++L + P GIS+ TLY LAKQ
Sbjct: 884 NAVVESRFNDASYYYWMLSMQCLDIAREKKEEMLKK--------FHSFQHLAELYHVYHSVHRYMSEPFSSNMPEILFNISRFLFHNLTR-DAPMGISKVDTLYALAKQ 983
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: UPI0019555BAA (intraflagellar transport protein 122 homolog isoform X1 n=2 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019555BAA) HSP 1 Score: 82.8 bits (203), Expect = 3.510e-16 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHS--RLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V ++RF DASYYYW S + A ++ K K + + + HS LA+LYH +H VH + ++PF+ PE+L +SRFL ++L + P GIS+ TLY LAKQ
Sbjct: 851 NAVVESRFSDASYYYWMLSMQCLDIAREDSEK-------KEEMLKKFHSFQHLAELYHVYHSVHRYMSEPFSSNMPEILFNISRFLFHNLTR-DVPMGISKVDTLYALAKQ 953
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Match: A0A8C2J8X8_CYPCA (Intraflagellar transport protein 122 homolog n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2J8X8_CYPCA) HSP 1 Score: 82.4 bits (202), Expect = 4.750e-16 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 4 NSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQ 330
N+V ++RF+DASYYYW S + A ++ T+ E+ +K LA+LYH +H VH + ++PF+ PE+L +SRFL ++L + P GIS+ TLY LAKQ
Sbjct: 795 NAVVESRFNDASYYYWMLSMQCLDIA-RDNTEKKEEMLKKFHSF----QHLAELYHVYHSVHRYMSEPFSSNMPEILFNISRFLFHNLTR-DAPMGISKVDTLYALAKQ 897 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15723.4223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15723.4223.1 >prot_Ecto-sp13_S_contig15723.4223.1 ID=prot_Ecto-sp13_S_contig15723.4223.1|Name=mRNA_Ecto-sp13_S_contig15723.4223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp LNSVAKARFDDASYYYWRSSTEAFAAAEKEKTKMSEKDTRKTQRIAEEHSback to top mRNA from alignment at Ecto-sp13_S_contig15723:2669..4088+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15723.4223.1 ID=mRNA_Ecto-sp13_S_contig15723.4223.1|Name=mRNA_Ecto-sp13_S_contig15723.4223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15723:2669..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15723:2669..4088+ >mRNA_Ecto-sp13_S_contig15723.4223.1 ID=mRNA_Ecto-sp13_S_contig15723.4223.1|Name=mRNA_Ecto-sp13_S_contig15723.4223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15723:2669..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |