mRNA_Ecto-sp13_S_contig15719.4216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15719.4216.1
Unique NamemRNA_Ecto-sp13_S_contig15719.4216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 7.640e-79
Identity = 142/234 (60.68%), Postives = 149/234 (63.68%), Query Frame = 2
Query:  200 DYIDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWH-ERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNR 898
            DYIDGVGRSRGRQSIPMEERFWHRVGR+MPSRNFM LFRCM+ TFAALV EL DTLDVRA DGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGV DGWVTS   E +     R  P  +        QDNISAAF+RRTGF                                                   GPPGSAGDA VW+W+RQSKDIAEEQK PEAQR    R R
Sbjct:    5 DYIDGVGRSRGRQSIPMEERFWHRVGREMPSRNFMILFRCMRPTFAALVKELYDTLDVRASDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGFR--------------------------------------------------GPPGSAGDAGVWDWARQSKDIAEEQKLPEAQRRHRRRPR 188          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.920e-51
Identity = 98/237 (41.35%), Postives = 127/237 (53.59%), Query Frame = 2
Query:  323 KSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWHERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRFILGGSAFANSSWLLTPYDNPVTRIQRFFNYKHSQTRFVVEHAFG 1033
            KSTF  LV  L  T  V   +   GP   PCER A+ L+R+GHG+G RATA+ F + +G V +W   V     +            + Q  IS A+++       V  +DGSHI +P PT     AY++YK FYS++LLA+VDN G FRW  SG  GS GD+ V   ++  K    EQ  P  +R        ILG SAFA   W+ TPY  P +R QR+FN+ HS  R  VEHA G
Sbjct:   12 KSTFRRLVHALFGTTYVFRVNN-TGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEKEKSLRKVVGGIDGSHIKIPAPTEHQQLAYYNYKKFYSIILLAIVDNRGLFRWTCSGCAGSCGDSGVLQHTKFYKAAQREQSKPVDERRIFANGACILGDSAFAEGPWMRTPYTMPSSREQRYFNFMHSSMRMRVEHALG 247          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.390e-46
Identity = 91/219 (41.55%), Postives = 121/219 (55.25%), Query Frame = 2
Query:  386 GGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWHERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRFILGGSAFANSSWLLTPYDNPVTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            G RGP F PCER A+ ++RLG  +  R TA  FG+ DG V+     V     +            + Q ++SAA++        + A+DGSHI +  P     ++Y++YK FYS+ LLA+VDN G FRW  SG PG+  D+ V   +   + + E+Q  P + R        ILG SAFA S W+ TP   P  R +RFFNYKHS  RF VEHAFGRLK
Sbjct:    5 GRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWELEKHLRGVIGAIDGSHIKILAPPDSLQTSYYNYKHFYSISLLAIVDNEGMFRWFCSGAPGACADSGVLTDTAFYEMVQEDQAQPVSSRQLFANGACILGDSAFAESPWMRTPIGKPDNRAERFFNYKHSSMRFRVEHAFGRLK 223          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: A0A015JYP1_RHIIW (DDE Tnp4 domain-containing protein n=4 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JYP1_RHIIW)

HSP 1 Score: 116 bits (291), Expect = 1.040e-25
Identity = 94/304 (30.92%), Postives = 144/304 (47.37%), Query Frame = 2
Query:  140 SAREQDLLAYLGLFDRHDVQDYIDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWHERVHHE-GVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRFILGGSAFANSSWLLTPY-DNP-VTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            S    DLL Y    D  +  + +  V R   R        +++ +     +  F   FR  K+TF  L +E+   L  R    G  P     ++ ++ L+ L  G   R    LF + +  +      V +        + +    +     NI+  F+R+ G   A+ A+DGSHIP+  P    M  Y++ KGFYS+VL A+VD+ G F  +  G PGS  D+R+++ S     ++          S I  N +ILG + +   +WLLTPY DN  +T+IQ ++N KHSQTR  VE AFG+LK
Sbjct:   29 SDENNDLLFYYECIDVIERNNSLRAVHRQARRARSFC---WFNNICSSWENMEFKRHFRITKTTFEWLCTEIAPILLQRNNSRG-APRLPIKQKVSVTLWFLATGQSYRTLGQLFALGETTICFIIRSVLYAIKCHFLSSKIRFPNNYTEFSNIAKKFKRKAGIPYAIGAIDGSHIPIKAPKEYPMD-YYNRKGFYSIVLQAVVDSYGRFIDIFVGYPGSTHDSRIFHNSPLYYMLSSSS-------SVIPSNSYILGDAGYPCQNWLLTPYRDNGRLTQIQTYYNTKHSQTRISVEQAFGKLK 320          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: UPI0014255786 (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255786)

HSP 1 Score: 115 bits (288), Expect = 3.260e-25
Identity = 101/310 (32.58%), Postives = 142/310 (45.81%), Query Frame = 2
Query:  134 LESAREQDLLAYLGLFDRHDVQDYIDGVGRS-RGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWV-TSWHERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKF-PEAQRSRICRN--RFILGGSAFANSSWLLTPYDNPVT--RIQRFFNYKHSQTRFVVEHAFGRLK 1042
            L  A EQ  L  + +F  H  QD      R  R ++S+     +W  +      ++F+  FR  K TF  +V EL   ++    +   GP F    R AM LYRL  G     TA  FG       T +HE          P  +      + + NI   F+ + GF   V A+DG+HI +  P  +    Y++ K +YS+VL  +VD  G F     G PGS  DARV++ S   + I + + F P  + +    N    ILG  A+   + L+ P+ N     R Q  FNYK SQ R +VEHAFGRLK
Sbjct:   59 LRYAEEQRELGQI-MFVLHTSQDATTARRRLWRKKKSV----HWWETIVPLYSDKDFIENFRLNKETFKYVVDELRPFIE--KSENNNGPTFSTEWRVAMTLYRLSSGIPFNRTANQFGSAKSTACTIYHEVCEAIEAVLMPKFITFPTGQELKKNIEK-FKMKGGFPQVVGAIDGTHIAIIAPRDQPQD-YYNRKEYYSIVLQGVVDANGMFIDTFCGMPGSVNDARVFHISNFGEAIKDGKIFKPYIEETLNGTNIPPLILGDGAYPLLTNLMRPFPNRPNKPREQTRFNYKLSQCRVIVEHAFGRLK 359          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: A0A2Z6RQ57_9GLOM (DDE Tnp4 domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RQ57_9GLOM)

HSP 1 Score: 110 bits (275), Expect = 9.500e-24
Identity = 89/275 (32.36%), Postives = 133/275 (48.36%), Query Frame = 2
Query:  233 RQSIPMEERFW-HRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGG--RGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWHERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRFILGGSAFANSSWLLTPY-DNP-VTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            RQ+      +W + +  +  +  F   FR  K+TF  L +EL   L  R    G  R P  H   + ++ L+ L  G   R    LF + +  +      V +           ++ H     +    F+R+ G   AV A+DGSHIP+  P    M  Y++ KGFYS+VL A++D+ G F  +  G PG   D+RV++ S     +           S I  N +ILG + +   +W+LTPY DN  +T+IQ ++N KHSQTR  VE AFG+LK
Sbjct:   49 RQTRRARSAYWFNNICNRWENVEFRCHFRITKTTFEWLCTELAPLLLQRNNSRGAPRTPIKH---KVSLTLWFLATGQSYRILGQLFALGESTICYIIRSVLYA----------IKCHFL---SSKIQFKRKAGIPYAVGAIDGSHIPIKAPKQYSMD-YYNRKGFYSIVLQAVIDSYGKFIDIFVGYPGFTYDSRVFHNSPLYHMLNSSSS------SVIPTNAYILGNAGYPCYNWILTPYRDNGRLTQIQTYYNIKHSQTRVGVEQAFGKLK 300          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: A0A6J2UM55_CHACN (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UM55_CHACN)

HSP 1 Score: 108 bits (269), Expect = 2.880e-23
Identity = 84/220 (38.18%), Postives = 119/220 (54.09%), Query Frame = 2
Query:  416 ERTAMVLYRLGHGAGARATAALFGV-----CDGWVTSWHERVHHEGVREAPT*VPVQA-HTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEE-QKFPEAQRSRICRN--RFILGGSAFANSSWLLTPY-DNP-VTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            +R A+ L++L   A  R  + LFGV     CD    S         V E      +Q  +T++   ++  F+ R G    V A+DGSHIP+  P     + YF+ KG+YS+VL A+VD  G F  V +G PGS  DARV   S    D+AE  Q F +  RS   ++   +ILG +A+  +SWL+ P+ DN  +T+ Q  FN+K S+ R VVE+ FGRLK
Sbjct:   32 KRVAVALWKLATNAEYRTVSHLFGVGISTACDCVKESC------SSVEEILLPETIQMPNTEKLKEMALYFEHRWGLPQCVGAIDGSHIPLVAPQEYH-TEYFNRKGWYSIVLQAVVDGRGLFWNVYTGQPGSLHDARVLRLSALW-DLAERGQLFSQQLRSIGGQDIGHYILGDAAYPLASWLMKPFPDNGHLTQQQEVFNHKTSKARVVVENTFGRLK 243          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: UPI0008115D3B (uncharacterized protein LOC108360410 n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008115D3B)

HSP 1 Score: 107 bits (266), Expect = 1.360e-22
Identity = 99/314 (31.53%), Postives = 145/314 (46.18%), Query Frame = 2
Query:  128 LLLESAREQDLLAYLGLFDRHDVQDYIDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTS--WH--ERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRF---ILGGSAFANSSWLLTPY--DNPVTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            ++L+  R Q LL Y GL  R+  Q  +  + R         +  FW           F T FR  +++F  L   L    ++   D     A    +R A+ L+ LG     R  + LFGV    V +  W   E V      +    +P    T +  +    F R  GF   + A+DG HI V  P P D + Y +YKG+YS+VLLA+VD    F +V  G PG   D++++N S   K + EE +  +  +  I   +    I+G SAF  S+ L+ PY     +T  Q+ +NYK S+ R VVE+AFG LK
Sbjct:   13 IILQHLRRQQLLLY-GLLQRNATQRSLWKLNR---------QSSFWEVNCNCNDDHFFKTHFRMNRTSFETLCGFL---KNLHKADTNWRNAIPLQKRVAIALFTLGSSGEYRVVSELFGVGISTVCTILWEFCEEVWQALSAQYIKKLPPTPQTLK--DCVDGFDR-LGFPQCLGAIDGCHIEVR-PNPADATDYHNYKGWYSIVLLAVVDYRYRFLYVNIGAPGRCNDSQIYNASLM-KRVMEENELLKVSKKEIGGVQMPICIIGDSAFRFSTSLMKPYAFSMALTETQKLYNYKLSKCRRVVENAFGHLK 308          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: UPI00189627A2 (uncharacterized protein LOC119384138 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189627A2)

HSP 1 Score: 106 bits (265), Expect = 3.490e-22
Identity = 89/264 (33.71%), Postives = 127/264 (48.11%), Query Frame = 2
Query:  296 NFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGV------------CDGWVTSWHERVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKF--PEAQRSRICRNRFILGGSAFANSSWLLTPY-DNPVTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            NF   FR  ++TF  LV     T++ +  +     A    +R A+ LY+L   A  R  A LF +            C+  V S  ER     VR  PT   ++ H K        FQ   GF   V A+DG H PV  P     S Y++YKG+YSV+LLALVD+   FR++  G PG   DA V++ S  S+ + E   F  P+     +     +L   AF  +  L+ P+     +  Q+ FNY+ S++R +VE+AFGRLK
Sbjct:   82 NFRQSFRVSQTTFKYLVDVCRPTMERQTTN--MREAIPVNKRVAVALYKLCSSAEDRTIANLFDMGRSTVNIIYREFCEAVVDSLEER----WVR-MPTPSEMEDHIKE-------FQLTLGFPQGVGALDGCHFPVS-PPKEYASDYYNYKGWYSVILLALVDHNYMFRFINVGSPGRCHDAHVYHQSSLSR-LIEGPTFRTPKTTLGNVAVPPLVLCDQAFPLTPNLMKPFASTSCSEEQKHFNYQLSKSRRIVENAFGRLK 329          
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: UPI001ED86C66 (putative nuclease HARBI1 n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86C66)

HSP 1 Score: 105 bits (263), Expect = 4.600e-22
Identity = 82/268 (30.60%), Postives = 124/268 (46.27%), Query Frame = 2
Query:  260 FWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL*DTLDVRAPDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVCDGWVTSWHE-------RVHHEGVREAPT*VPVQAHTKRQDNISAAFQRRTGFSDAVLAMDGSHIPVPCPTPRDMSAYFSYKGFYSVVLLALVDNAGFFRWVISGPPGSAGDARVWNWSRQSKDIAEEQKFPEAQRSRICRNRFILGGSAFANSSWLLTPYDNPVTRIQRFFNYKHSQTRFVVEHAFGRLK 1042
            FW R     P   F   FR  + TF+ +  +L +TL     D     A    ++ A+ LY L  G+        FGV    V++  E       R +H  +R   T   ++A T  Q      F+ R  F   + A+DG HIP+  P+  +   Y++YKG++S++LLA+VD+A  F +V  G PG   DA V   S   + +   +         I  +  ++G  AF     +L P+  P    +  FNY+ S+ R VVE+AFGRLK
Sbjct:   57 FWERDVPAWPEDVFQKTFRLCRETFSIICRDLGETL--ARQDTQMREAIPVRKKVAIALYFLKSGSDYGVVGMTFGVGRSTVSAIVEEFCAAVRRQYHPRIRFPATEEDMRA-TANQ------FEYRWDFPGVIGAVDGCHIPIKTPS-HEGGDYYNYKGWHSIILLAVVDSAYRFTYVNVGYPGRVNDAGVLRASALWRKLTSGE---------IPNHYHLVGDGAFPLGQHMLKPFQQPRRPCEELFNYRLSRARMVVENAFGRLK 305          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI7.640e-7960.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA50_9PHAE3.920e-5141.35DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JSG7_9PHAE2.390e-4641.55DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A015JYP1_RHIIW1.040e-2530.92DDE Tnp4 domain-containing protein n=4 Tax=Rhizoph... [more]
UPI00142557863.260e-2532.58protein ALP1-like n=1 Tax=Anneissia japonica TaxID... [more]
A0A2Z6RQ57_9GLOM9.500e-2432.36DDE Tnp4 domain-containing protein n=1 Tax=Rhizoph... [more]
A0A6J2UM55_CHACN2.880e-2338.18protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]
UPI0008115D3B1.360e-2231.53uncharacterized protein LOC108360410 n=1 Tax=Rhago... [more]
UPI00189627A23.490e-2233.71uncharacterized protein LOC119384138 n=1 Tax=Rhipi... [more]
UPI001ED86C664.600e-2230.60putative nuclease HARBI1 n=3 Tax=Ischnura elegans ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15719contigEcto-sp13_S_contig15719:367..3907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1042
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.1989815-UTR-Ecto-sp13_S_contig15719:366..4211681462831.1989815-UTR-Ecto-sp13_S_contig15719:366..421Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15719 367..421 +
1681462831.2279081-UTR-Ecto-sp13_S_contig15719:1712..19841681462831.2279081-UTR-Ecto-sp13_S_contig15719:1712..1984Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15719 1713..1984 +
1681462831.2361062-UTR-Ecto-sp13_S_contig15719:3495..39071681462831.2361062-UTR-Ecto-sp13_S_contig15719:3495..3907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15719 3496..3907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.2092733-CDS-Ecto-sp13_S_contig15719:421..6871681462831.2092733-CDS-Ecto-sp13_S_contig15719:421..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15719 422..687 +
1681462831.2184253-CDS-Ecto-sp13_S_contig15719:1675..17121681462831.2184253-CDS-Ecto-sp13_S_contig15719:1675..1712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15719 1676..1712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15719.4216.1prot_Ecto-sp13_S_contig15719.4216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15719 422..1712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15719.4216.1

>prot_Ecto-sp13_S_contig15719.4216.1 ID=prot_Ecto-sp13_S_contig15719.4216.1|Name=mRNA_Ecto-sp13_S_contig15719.4216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MDHGEMLAVLMSAVLAGMEQIHLILLLESAREQDLLAYLGLFDRHDVQDY
IDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL
*
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mRNA from alignment at Ecto-sp13_S_contig15719:367..3907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15719.4216.1 ID=mRNA_Ecto-sp13_S_contig15719.4216.1|Name=mRNA_Ecto-sp13_S_contig15719.4216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3541bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15719:367..3907+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAGATACGTACACGCGTTCCCAACAAAGAGACCCTACCCGCGAGCT ACCCCATGGACCATGGAGAGATGCTGGCCGTCCTGATGTCGGCCGTCCTA GCCGGCATGGAGCAAATACACCTTATTCTGTTGCTCGAGTCAGCTCGGGA ACAAGATCTCCTCGCCTACCTCGGCTTGTTCGACCGCCACGACGTACAGG ACTACATAGACGGGGTAGGGAGGTCGAGGGGCCGACAGAGCATCCCTATG GAAGAGCGTTTCTGGCATCGCGTGGGCCGTCAAATGCCGTCGAGGAACTT CATGACCCTCTTCCGCTGCATGTGAGTGTCGATCAGGATAACGAAGGACT GGGTGTTGAGCACAACATGTGTGCGATCGATGCAGCCGACGGGCGTGTGC ATGAAGTTGAAGTTTCTACATGTATGCATGGACACAGCAGTCTCGGCCGT CCGGTTCAACGCTCATTTACTCGAGGAACCCAGAGGAGCGTGTGTGGCGT TTTCGCTTCTTGGCGCATGAATGTTTGTCGATGAACGCCGTACATGTACC TGCATATTGCCGGAGGTCGATAGAGTTCGGTTCAGCGGTATCATAGTCCA ACTCTTTGGGGTGACCAGTGGCAAACCGGTTATGCGTACGATAGACGAAT CCTCTCGGCTATGGCATGTTGAGCTGTAGGTCCTCAGCTATTTGGGTATT CGGCCGCAGTAGTACTAGGCAGTCGGAGAACCGCCCAACCTCCTCTTAAT TGTGGGGCTTGCCACGCGAACGCAGTGTTCTCGGCACACCGCCGTGCTGT ACATCACGACGCCTGGTTTATGGTGCCTCTCATGACGAAGGGATCCTTGT AGGTGACCCTAAATTTTCTTTCCTACAATACATACATGTAGGAATCAAAA ACGCGTTTCGTTGGCGGCGTGATTAATGCAGCCAGGGGTGAAGACTACAA CCAACTACAACCAGCACGTTTAGTTCAAGTACAATAAACCCTACGGATTG TGTAGGTTACGCTTGATGTACAAATACTATTGCAGTGTCCACCTAGTGCG GGTAGCGGCGGTGGTGTAGGGGTCGCATGGTGCGCTTCTGATGGCGGAAG TCGGGAGTTCCAGTCCCGATCCGATCCGAAAAGTGGAATACTGCTGAAGA AGAAATGAAACAGGAAACAATACTTCTCAATCCGGCACATCTTATCCTCG AGCGCCGCGCTCCAGGCGACGGTCATCCACCAAACCTCGACCCCCACTCC CCCACACCCGTACACTTGGCTGCCTGTCTCCTTATGTCCTGACTTTCTAT CATGTGCAGGAAATCGACCTTCGCTGCTCTCGTCTCGGAGCTGTAGGACA CCCTCGACGTTCGAGCACCCGACGGCGGGCGCGGCCCGGCTTTCCATCCG TGCGAACGAACGGCTATGGTATTGTACAGGTTGGGACACGGGGCCGGAGC ACGGGCGACGGCGGCGCTCTTCGGTGTTTGTGATGGATGGGTCACATCAT GGCACGAGCGAGTTCATCACGAAGGTGTCCGCGAGGCTCCTACCTAGGTT CCTGTCCAGGCCCACACGAAACGACAAGACAACATATCCGCGGCTTTCCA GCGCCGTACGGGATTCAGGTGCGTTCTATTTGCTGTGACACCGCCAAAAC AATTGTCTGTATGCTTAGCGCAGAGCGACTTGACCCAAACTCGTGGGTGC GAGTATCCCCCAACGGCAGGCGGCCCGGGAGTTGCGTATAGTATCTTAGA CGGGGCACACTCTCGGCGTTGTATTTTTCTGGGGGTGTTGAATGTAGTGA AGGCGCGACCGAAATAAGTATTGATTCCTTACGTTTTTCCGAACCCCTTG GGCGACCCAACTTACGTAGAATCGCTTCTTAGACTGTCTGTTTGCTCTGT TTTTCCTAGCGAAGCGAAATTTCTAATCTGGGCTGCCGGCCCCTCAAGTT GGAAGGACTCCCTGAAACCCAAAAAAAGATCTTCCCAGTCTGTAAGTGCT TTATCTGGGTTTTACATTATGGACCACGTTACTTGCTTTTGGGTGGAGGT CAGCAGACCCCCTTCTTATTTTTTTGGAGGACACAGCGTTATGCAGCAGA TAGCACACGCGCCGAGGTCGACACCACTCAATAGACAACACACGCACAGT AGACAGCGTTAGCATAAAAGACGACACACACGCACAGCGGTTAACAGTAT CTGGGCTCGATGCCGCTGGACTCTCTGTGGTGTGATAAGGCAATGTGTTG ATGCTGTCGCGCACAGCGTTTTTTTTTTTTACCGCCGCGTTCAACTGCCA TCAATGTCAGCAAAGCACCACATTAGTTGTCGAAACTTTTGACGCCGATC GCCATCGCACCACTTCGAGCGTGTGAACCATTTTGGTGTATCTGGGCGTT AGAGTTGTGTTGGCCATGGGTGCTATATGTGGCGAGAGCATCGTGGCGAT GTGAAATCCGGCTTCGCTTTTTCGCCTGGCGATGCGGCCCGATTGCCCGG GCCAAACAATACGATTTGGATTCCACACCGCCACGAAGGTCTTCCCACAC ACAGCACCCATGCATAACACAACCGTCACACTCAGAGATACCGCAATAGG GCACACGCTCGAAGTGGTGCCATGACGATTGGCGCGCTAGGTGACAACTG TCTTGTGTCCTGCTGTGTCGCTGGCAGTTGGAAGGACACCGCCCAACGAA AAAGAGGGAACAGGAGGTTCAGCAGTAGCATGCGGGGGGTATGTATGACC ACAATAACGGGATGTGGACGGGGGGGGGGGGGTGACCGGTAGGTGATAGT TCATGTTACCACAGACCTCCGACACCAGCTCTAAGCAGGTGTAGTATCAT GTGTGTGGTTTTTGCACTCTGTTCCCGCCCGTGGACGCACATGTCTGACG AGAGTAACATCTATCAGCTGTCGCTCGTTGTAGTGACAGCTAGTAACATA TTATTTAGATCGGACACTAAAACGCCCTCCGGCGTGGGCACACGTGCAAC ATTTTCATCCCAGGCTTGGACGGACCTGCCACATCATCACGAATTCAAGC CCCGCGCACTGTTTTGAGTCGGCTAACTTGGGTGACCCTAGCACCCCTTC GTGCCTGTTCGTGCGTTGTTAACCATCAGCGATGCTGTCTTGGCTATGGA TGGTTCCCACATCCCCGTCCCCTGCCCTACCCCGCGTGATATGTCGGCAT ACTTCAGCTACAAAGGATTCTACTCCGTCGTCCTTCTCGCGTTGGTGGAC AACGCCGGCTTCTTCCGGTGGGTCATCAGCGGACCTCCGGGCTCAGCGGG CGATGCCCGTGTTTGGAACTGGTCAAGACAGAGTAAGGACATCGCGGAGG AACAGAAGTTCCCGGAGGCGCAACGCAGCCGTATCTGTCGCAACCGCTTC ATCCTGGGAGGCTCTGCGTTCGCGAACAGCTCTTGGCTGCTAACGCCATA CGACAATCCCGTCACAAGGATCCAACGTTTCTTCAACTACAAGCACTCGC AGACGCGGTTCGTCGTCGAGCATGCTTTCGGGCGCCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15719:367..3907+

>mRNA_Ecto-sp13_S_contig15719.4216.1 ID=mRNA_Ecto-sp13_S_contig15719.4216.1|Name=mRNA_Ecto-sp13_S_contig15719.4216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15719:367..3907+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCATGGAGAGATGCTGGCCGTCCTGATGTCGGCCGTCCTAGCCGG
CATGGAGCAAATACACCTTATTCTGTTGCTCGAGTCAGCTCGGGAACAAG
ATCTCCTCGCCTACCTCGGCTTGTTCGACCGCCACGACGTACAGGACTAC
ATAGACGGGGTAGGGAGGTCGAGGGGCCGACAGAGCATCCCTATGGAAGA
GCGTTTCTGGCATCGCGTGGGCCGTCAAATGCCGTCGAGGAACTTCATGA
CCCTCTTCCGCTGCATGAAATCGACCTTCGCTGCTCTCGTCTCGGAGCTG
TAG
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