mRNA_Ecto-sp13_S_contig10441.421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 6.350e-16 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1
Query: 1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV
Sbjct: 494 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 528
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 3.660e-14 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1
Query: 1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
MR SLSFDELAAWYT EGYKVAPWLELLDLNKWAV
Sbjct: 497 MRASLSFDELAAWYTHEGYKVAPWLELLDLNKWAV 531
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A6U1MRH8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRH8_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 4.780e-8 Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query: 4 RDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
++ +SF+ELAAWYT GY APWLELLDL KW V
Sbjct: 211 KNKISFEELAAWYTNGGYWFAPWLELLDLKKWLV 244
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK) HSP 1 Score: 55.1 bits (131), Expect = 5.320e-8 Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1
Query: 4 RDSLSFDELAAWYTQEGYKVAPWLELLDLNKW 99
++ + F+ELAAWYT+ GY+++PWLELLDL KW
Sbjct: 178 KNKIDFEELAAWYTEGGYRLSPWLELLDLKKW 209
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S3QCH9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCH9_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 3.050e-7 Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query: 7 DSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
D ++FDE WY + G++VAPWLELLDLNKW +
Sbjct: 1074 DRINFDEFGDWYNEGGFEVAPWLELLDLNKWVL 1106
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A1E7FRD1_9STRA (EF-hand domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRD1_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 3.050e-7 Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
+RD++SFD+ A WYT+ G+ PW+ELLDLNKW +
Sbjct: 1447 IRDTISFDDFADWYTRVGHSNIPWVELLDLNKWII 1481
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A8J2WXS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXS2_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 7.900e-7 Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query: 7 DSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
D ++FD+ A WYT GYKVA WLELLDL+KW +
Sbjct: 428 DLVAFDDFADWYTDGGYKVASWLELLDLSKWVL 460
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S2D6K2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6K2_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.080e-6 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1
Query: 19 FDELAAWYTQEGYKVAPWLELLDLNKWAV 105
FD+ A WYT GY+VAPWLELLDL+KW +
Sbjct: 312 FDDFAQWYTDGGYEVAPWLELLDLSKWVL 340
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7R9U0Z9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0Z9_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 1.120e-6 Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1
Query: 16 SFDELAAWYTQEGYKVAPWLELLDLNKW 99
+F+++A WY +EG++VAPWLELLDL KW
Sbjct: 85 TFNDIATWYGEEGHRVAPWLELLDLRKW 112
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A448ZBU9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBU9_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 1.460e-6 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query: 1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
+RD +SFD+ A WYT+ G+ W+ELLDLNKWAV
Sbjct: 1445 LRDDISFDDFAEWYTRIGHGNIGWVELLDLNKWAV 1479 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10441.421.1 >prot_Ecto-sp13_S_contig10441.421.1 ID=prot_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAVback to top mRNA from alignment at Ecto-sp13_S_contig10441:5395..5499+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10441.421.1 ID=mRNA_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10441:5395..5499+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10441:5395..5499+ >mRNA_Ecto-sp13_S_contig10441.421.1 ID=mRNA_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10441:5395..5499+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |