mRNA_Ecto-sp13_S_contig10441.421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10441.421.1
Unique NamemRNA_Ecto-sp13_S_contig10441.421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.350e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1
Query:    1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV
Sbjct:  494 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 528          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.660e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            MR SLSFDELAAWYT EGYKVAPWLELLDLNKWAV
Sbjct:  497 MRASLSFDELAAWYTHEGYKVAPWLELLDLNKWAV 531          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A6U1MRH8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRH8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.780e-8
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    4 RDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            ++ +SF+ELAAWYT  GY  APWLELLDL KW V
Sbjct:  211 KNKISFEELAAWYTNGGYWFAPWLELLDLKKWLV 244          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 5.320e-8
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    4 RDSLSFDELAAWYTQEGYKVAPWLELLDLNKW 99
            ++ + F+ELAAWYT+ GY+++PWLELLDL KW
Sbjct:  178 KNKIDFEELAAWYTEGGYRLSPWLELLDLKKW 209          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S3QCH9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCH9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.050e-7
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 DSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            D ++FDE   WY + G++VAPWLELLDLNKW +
Sbjct: 1074 DRINFDEFGDWYNEGGFEVAPWLELLDLNKWVL 1106          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A1E7FRD1_9STRA (EF-hand domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRD1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.050e-7
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            +RD++SFD+ A WYT+ G+   PW+ELLDLNKW +
Sbjct: 1447 IRDTISFDDFADWYTRVGHSNIPWVELLDLNKWII 1481          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A8J2WXS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXS2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.900e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 DSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            D ++FD+ A WYT  GYKVA WLELLDL+KW +
Sbjct:  428 DLVAFDDFADWYTDGGYKVASWLELLDLSKWVL 460          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7S2D6K2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6K2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.080e-6
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   19 FDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            FD+ A WYT  GY+VAPWLELLDL+KW +
Sbjct:  312 FDDFAQWYTDGGYEVAPWLELLDLSKWVL 340          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A7R9U0Z9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0Z9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-6
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1
Query:   16 SFDELAAWYTQEGYKVAPWLELLDLNKW 99
            +F+++A WY +EG++VAPWLELLDL KW
Sbjct:   85 TFNDIATWYGEEGHRVAPWLELLDLRKW 112          
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Match: A0A448ZBU9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBU9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.460e-6
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    1 MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV 105
            +RD +SFD+ A WYT+ G+    W+ELLDLNKWAV
Sbjct: 1445 LRDDISFDDFAEWYTRIGHGNIGWVELLDLNKWAV 1479          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10441.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FUX5_ECTSI6.350e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX4_9PHAE3.660e-1494.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U1MRH8_9STRA4.780e-867.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XMH2_HETAK5.320e-862.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3QCH9_9STRA3.050e-760.61Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1E7FRD1_9STRA3.050e-757.14EF-hand domain-containing protein n=1 Tax=Fragilar... [more]
A0A8J2WXS2_9STRA7.900e-763.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D6K2_9STRA1.080e-668.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9U0Z9_9STRA1.120e-664.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A448ZBU9_9STRA1.460e-660.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10441contigEcto-sp13_S_contig10441:5395..5499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score79.0
Seed ortholog evalue5e-13
Seed eggNOG ortholog2880.D7FUX5
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CU92@1,2RK0N@2759
Cds size105
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.9937527-CDS-Ecto-sp13_S_contig10441:5394..54991681462530.9937527-CDS-Ecto-sp13_S_contig10441:5394..5499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10441 5395..5499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10441.421.1prot_Ecto-sp13_S_contig10441.421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10441 5395..5499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10441.421.1

>prot_Ecto-sp13_S_contig10441.421.1 ID=prot_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MRDSLSFDELAAWYTQEGYKVAPWLELLDLNKWAV
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mRNA from alignment at Ecto-sp13_S_contig10441:5395..5499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10441.421.1 ID=mRNA_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10441:5395..5499+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGACTCTCTGTCGTTCGACGAACTGGCGGCGTGGTATACCCAGGA GGGGTACAAGGTGGCCCCGTGGTTGGAGCTGCTGGACCTCAACAAGTGGG CTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10441:5395..5499+

>mRNA_Ecto-sp13_S_contig10441.421.1 ID=mRNA_Ecto-sp13_S_contig10441.421.1|Name=mRNA_Ecto-sp13_S_contig10441.421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10441:5395..5499+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGACTCTCTGTCGTTCGACGAACTGGCGGCGTGGTATACCCAGGA
GGGGTACAAGGTGGCCCCGTGGTTGGAGCTGCTGGACCTCAACAAGTGGG
CTGTC
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