mRNA_Ecto-sp13_S_contig1570.4207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1570.4207.1
Unique NamemRNA_Ecto-sp13_S_contig1570.4207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1570.4207.1 vs. uniprot
Match: D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.910e-137
Identity = 226/271 (83.39%), Postives = 232/271 (85.61%), Query Frame = 1 
Query:  256 MPLAVLAGHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAASAGGRLGNGDGGGKLDAGLEGVRYEEHQRLEAYFVELARRRRAVAVLADEDHIRIFGTPLVASRDTGYTPAAATAASALAISAKTNDVKALVAELHASVEQGDAEAVRKVLFSRCQQHPGEEVEDAGEDADGDSAQTGETQPNSLLVPVDSACPRTGMSPLLKAVEGGSAEVIRVLLDAGADVRMQASAALYDGDTALDLARRLSCSGAIIEMIALASSKVPS 1068
            MPLAVLAGHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVI ASAG R G GDGGGKLDAGLEG+RYEEHQRLEAYFVELAR RRAVAVL DED+I IFGTPLVAS DTGYTPAAAT ASALAI+ +TN+VKALVA LHASVEQGDAEAVR VL SR QQ PGEEVEDAG DADGDSAQ  ETQP SLLVPVDSACPRTGMSPLLKAVEGGSA+                 AALYDGDTALDLARRLSCS  IIEMI LASSKVPS
Sbjct:    1 MPLAVLAGHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIGASAGSRRGYGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLTDEDYISIFGTPLVASGDTGYTPAAATTASALAINTQTNNVKALVAVLHASVEQGDAEAVRNVLSSRYQQPPGEEVEDAGGDADGDSAQIEETQPKSLLVPVDSACPRTGMSPLLKAVEGGSAK-----------------AALYDGDTALDLARRLSCSDTIIEMITLASSKVPS 254
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BLAST of mRNA_Ecto-sp13_S_contig1570.4207.1 vs. uniprot
Match: A0A836CHM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.770e-22
Identity = 93/245 (37.96%), Postives = 120/245 (48.98%), Query Frame = 1 
Query:  277 GHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAASAGGRLGNGDGGGKLDAGLEGVRYEEHQRLEAYFVELARRRRAVAVLADEDHIRIFGTPLVASRDTGYTPAAATAASALAISAKTNDVKALVAELHASVEQGDAEAVRKVLFSRCQQHPGEEVEDAGEDADGDSAQTGETQPNSLLVPVDSACPRTGMSPLLKAVEGGSAEVIRVLLDAGADVRMQASAALYDGDTALDLARRL 1011
            G P LVSVKG ++DV+   A+  +  LA   GH+ASRV+A    G L + D    LD  LEG+ +++H+RLE    E+     AVA LA  D+  IFG         G++        A        D       LHA + Q D + VR+ L            EDAG                     ++ AC RTG+SPL KAVE GS ++++VLL AGAD    A AALYDGDT L LARRL
Sbjct:   19 GMPRLVSVKGRIYDVTSAAAFASDKPLARIVGHEASRVLAT---GVLQDED----LDRSLEGISFDDHRRLEKLSNEMEAAFTAVARLAAADYRAIFG---------GFSTLDGGGGGAXXXXXXXXD------GLHALIAQQDVDGVRQRL-----------QEDAGS--------------------INRACSRTGLSPLHKAVEEGSTDIVQVLLAAGAD--RSAHAALYDGDTPLQLARRL 208
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BLAST of mRNA_Ecto-sp13_S_contig1570.4207.1 vs. uniprot
Match: A0A7S2RSP5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSP5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.560e-20
Identity = 96/296 (32.43%), Postives = 140/296 (47.30%), Query Frame = 1 
Query:  166 AITCPLGFGGGAN------DTGRPTAASFAKRGLPRMPLAVLAGH-------PTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAASAGGRLGNGDGGGKLDAGLEGVRYEEHQRLEAYFVELARRRRAVAVLADEDHIRIFGTPLVASRDTGYTPAAATAASALAISAKTNDVKALVAELHASVEQGDAEAVRKVLFSRCQQHPGEEVEDAGEDADGDSAQTGETQPNSLLVPVDSACPRTGMSPLLKAVE-GGSAEVIRVLLDAGADVRMQASAALYDGDTALDLARRL 1011
            A TCPLGFGGG++              + A + LP M LA L  H       P  VSVKG VFDV+ D+       L+ C G D SR++A      +G+ D    L+  L G+ YE+HQRLEA++   + R + VA L+ E++ ++FG          ++ A AT + A A+              H ++E  D  A+ +++                           +T P +  +     CPRT ++PL K VE GG+ E++ +LL AGADV  QA   LYDG T  +LA +L
Sbjct:   67 APTCPLGFGGGSSAQXXXXXXXXXXGQAQAHQELPEMSLAALGRHNGKIPRMPKFVSVKGSVFDVTQDKESFGVPPLSDCCGSDVSRILA------VGSFDPN-LLNQSLAGLTYEQHQRLEAFYHMFSGRFKPVARLSAENYEQLFGDTFC------FSQAPATESPAAAV--------------HDAIEHQDIAALTRLI---------------------------DTDPAAATL----LCPRTRLTPLHKVVEVGGALEMVHLLLSAGADVTAQAD--LYDGATPGNLATKL 302
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1570.4207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRP3_ECTSI1.910e-13783.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHM5_9STRA1.770e-2237.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RSP5_9STRA2.560e-2032.43Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1570contigEcto-sp13_S_contig1570:1109..3092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1071
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-12_000540.1
Cds size1071
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.379814-CDS-Ecto-sp13_S_contig1570:1108..16681681462830.379814-CDS-Ecto-sp13_S_contig1570:1108..1668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1570 1109..1668 +
1681462830.3919158-CDS-Ecto-sp13_S_contig1570:2139..25421681462830.3919158-CDS-Ecto-sp13_S_contig1570:2139..2542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1570 2140..2542 +
1681462830.4038749-CDS-Ecto-sp13_S_contig1570:2984..30921681462830.4038749-CDS-Ecto-sp13_S_contig1570:2984..3092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1570 2985..3092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1570.4207.1prot_Ecto-sp13_S_contig1570.4207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1570 1109..3092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1570.4207.1

>prot_Ecto-sp13_S_contig1570.4207.1 ID=prot_Ecto-sp13_S_contig1570.4207.1|Name=mRNA_Ecto-sp13_S_contig1570.4207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
MSGGTCPFAAQWQRSQPSGTTAPTCPVGFGSPPPHPTTGASSSATATATA
TTTTAAITCPLGFGGGANDTGRPTAASFAKRGLPRMPLAVLAGHPTLVSV
KGIVFDVSDDEAYNHEGALAGCAGHDASRVIAASAGGRLGNGDGGGKLDA
GLEGVRYEEHQRLEAYFVELARRRRAVAVLADEDHIRIFGTPLVASRDTG
YTPAAATAASALAISAKTNDVKALVAELHASVEQGDAEAVRKVLFSRCQQ
HPGEEVEDAGEDADGDSAQTGETQPNSLLVPVDSACPRTGMSPLLKAVEG
GSAEVIRVLLDAGADVRMQASAALYDGDTALDLARRLSCSGAIIEMIALA
SSKVPS*
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mRNA from alignment at Ecto-sp13_S_contig1570:1109..3092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1570.4207.1 ID=mRNA_Ecto-sp13_S_contig1570.4207.1|Name=mRNA_Ecto-sp13_S_contig1570.4207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1570:1109..3092+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTGGCACGTGTCCCTTTGCGGCGCAGTGGCAGCGATCACAACC
ATCTGGGACAACAGCACCAACTTGCCCCGTGGGCTTCGGATCTCCCCCAC
CTCATCCTACTACTGGCGCGTCGTCATCAGCAACTGCAACTGCAACAGCA
ACGACAACAACAGCAGCAATCACCTGCCCGCTCGGTTTCGGAGGAGGAGC
CAATGACACCGGTAGACCAACAGCGGCCTCGTTTGCCAAACGCGGCCTCC
CGCGAATGCCCCTTGCCGTCCTTGCCGGACACCCCACGCTTGTTTCGGTC
AAGGGCATCGTTTTCGATGTATCCGATGACGAGGCCTACAACCACGAAGG
GGCACTCGCTGGATGCGCGGGACACGATGCGAGCCGCGTGATTGCAGCGT
CTGCGGGTGGTAGGCTTGGCAATGGTGACGGTGGTGGCAAGCTTGATGCT
GGGTTGGAAGGTGTACGGTATGAGGAGCATCAGAGACTGGAGGCTTACTT
TGTGGAGCTGGCTCGCCGTAGGCGTGCGGTTGCTGTTCTGGCGGACGAGG
ACCATATCAGGTTGGGCACACAGAGATGATGGCAGTGGTATCATACCAGT
CATGTTTGTACCCAAATACGCAGCAACCAAAGACGCTGATATCCTCGAGG
TGTGCTGCTGTAGTGTGCCGATTCCATATGGTAGTAACAGCCGTGTTGTT
TTGTACACAAGCGACTGAGGTTAAAGCCTGATTTCGCTGAGCGGTTGGAC
GTGTCACCACGCCCAGAGCTCCGATGAAGGGACGATGGTCGACCTATATC
TTTGGAACTGCCATGCGCTGGGATCGTTCGTACGCCGTTCTGTTTGATTT
GACATTTGTTGCCGGGAGTACAGGCAAAAAAAAATCTTTTCGGCGATCCT
GTGGTCTGGCAGCAGCGGCAGCATCTGGAGCATGGCATGCAATCATGCGG
TACTGCTGTCGTTAGCGAGGGCTGCTGTATACGGCCCTCCAGTTCTCTAA
CGCTAATCCCTCTCCCTCCGTCTCCTCGCAGAATTTTTGGGACTCCTCTC
GTCGCCAGCAGAGACACTGGGTACACTCCGGCTGCTGCTACGGCCGCTTC
TGCTCTCGCCATCAGCGCAAAAACTAATGACGTAAAGGCACTGGTGGCCG
AACTCCACGCCTCCGTAGAGCAAGGCGACGCTGAAGCGGTGAGGAAGGTG
TTGTTCTCTAGATGCCAGCAGCACCCCGGAGAGGAGGTGGAAGACGCTGG
GGAAGACGCAGATGGAGACAGCGCCCAAACGGGAGAAACACAGCCAAATA
GTCTGTTGGTGCCCGTCGACTCCGCTTGCCCTCGCACGGGGATGTCACCG
TTACTCAAGGCGGTGGAGGGGGGCTCGGCGGAGGTGATCAGAGTGCTGCT
AGACGCCGGGGCGGATGTCCGAATGCAGGCAAGTGTGAAATGGTGTGCCT
CTGTGTTGCCGCGGCTGGTACGTCTACCCTTGTTTGCGCAATCAGGGCGT
AGGGCTGCGATGACACATATCGTACAAAGGTTTCTGTCATTTGGTATGAA
TGCTAGAAGCTGTTCAACACGGTGTGGTGGTGGTGGTGTTTGGCTCGATC
GTTTTCACTTTTCGGAGCTCGTAAACGACACCATCGGTTCCAACCCGGAA
GCATAAAACTTTGGCATGATCGCCAAACAAGAGAGAGCATCCAAGTGCTG
CTTCCGTACCCATCTTGTAGATGCGATGGTGACCCTGCTCTCAGACGACG
CGATTGGTGCTCGATCCGAGCGCACTAACGTACTCCACCTACCCAACCTC
ATGCGTATTTTCCTCTCACCTGGTTATTCCCGCCTGTGCCGTTCGCCGTT
TTGTCTGATTGATGTAAATCCAAAAGGCCGCGCTATATGATGGAGACACA
GCCCTGGATCTTGCGAGGAGACTTAGCTGCAGTGGTGCGATCATAGAGAT
GATAGCACTTGCATCGTCGAAGGTTCCCTCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1570:1109..3092+

>mRNA_Ecto-sp13_S_contig1570.4207.1 ID=mRNA_Ecto-sp13_S_contig1570.4207.1|Name=mRNA_Ecto-sp13_S_contig1570.4207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1570:1109..3092+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTGGCACGTGTCCCTTTGCGGCGCAGTGGCAGCGATCACAACC
ATCTGGGACAACAGCACCAACTTGCCCCGTGGGCTTCGGATCTCCCCCAC
CTCATCCTACTACTGGCGCGTCGTCATCAGCAACTGCAACTGCAACAGCA
ACGACAACAACAGCAGCAATCACCTGCCCGCTCGGTTTCGGAGGAGGAGC
CAATGACACCGGTAGACCAACAGCGGCCTCGTTTGCCAAACGCGGCCTCC
CGCGAATGCCCCTTGCCGTCCTTGCCGGACACCCCACGCTTGTTTCGGTC
AAGGGCATCGTTTTCGATGTATCCGATGACGAGGCCTACAACCACGAAGG
GGCACTCGCTGGATGCGCGGGACACGATGCGAGCCGCGTGATTGCAGCGT
CTGCGGGTGGTAGGCTTGGCAATGGTGACGGTGGTGGCAAGCTTGATGCT
GGGTTGGAAGGTGTACGGTATGAGGAGCATCAGAGACTGGAGGCTTACTT
TGTGGAGCTGGCTCGCCGTAGGCGTGCGGTTGCTGTTCTGGCGGACGAGG
ACCATATCAGAATTTTTGGGACTCCTCTCGTCGCCAGCAGAGACACTGGG
TACACTCCGGCTGCTGCTACGGCCGCTTCTGCTCTCGCCATCAGCGCAAA
AACTAATGACGTAAAGGCACTGGTGGCCGAACTCCACGCCTCCGTAGAGC
AAGGCGACGCTGAAGCGGTGAGGAAGGTGTTGTTCTCTAGATGCCAGCAG
CACCCCGGAGAGGAGGTGGAAGACGCTGGGGAAGACGCAGATGGAGACAG
CGCCCAAACGGGAGAAACACAGCCAAATAGTCTGTTGGTGCCCGTCGACT
CCGCTTGCCCTCGCACGGGGATGTCACCGTTACTCAAGGCGGTGGAGGGG
GGCTCGGCGGAGGTGATCAGAGTGCTGCTAGACGCCGGGGCGGATGTCCG
AATGCAGGCAAGTGCCGCGCTATATGATGGAGACACAGCCCTGGATCTTG
CGAGGAGACTTAGCTGCAGTGGTGCGATCATAGAGATGATAGCACTTGCA
TCGTCGAAGGTTCCCTCGTAA
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