mRNA_Ecto-sp13_S_contig15669.4193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: D7FP68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP68_ECTSI) HSP 1 Score: 555 bits (1431), Expect = 4.870e-196 Identity = 361/399 (90.48%), Postives = 366/399 (91.73%), Query Frame = 1
Query: 1 MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPGSRWGSLSPTNGSLNGHTAHSSSPVRGAGAAGGVDGRFPANGGVGGSTSTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAAQGSXXXXXXXXXXXXXXXXXXXXX-GEGDAGTLSSARQGXXXXXXXXXXXX--KKAVRRGVTFAEDVVVVQDKAXXXXXEDPRCRGEXXXXXXXXX---AASPDRFVGWSP 1179
MHSKAFYAIEQLKGIRD+ KSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAA TA+PGSRWGSLSPTNGS NGHTAHSSSP+RGAGAAGGVDGRFPANGGVGGST TPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAA XXXXXXXXXXXXXXXXXXXXX GEGDAG+LSS XXXXXXXXXXXX KKAVRRGVTFAEDVVVVQ XXXXX XXXXXXXXX AASPDR VGWSP
Sbjct: 1 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAAPTATPGSRWGSLSPTNGSPNGHTAHSSSPLRGAGAAGGVDGRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXGEGDAGSLSSXXXXXXXXXXXXXXXXXXKKAVRRGVTFAEDVVVVQXXXXXXXXXXXXXXXXXXXXXXXXXXVSAASPDRIVGWSP 397
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE) HSP 1 Score: 550 bits (1416), Expect = 4.610e-189 Identity = 338/393 (86.01%), Postives = 346/393 (88.04%), Query Frame = 1
Query: 1 MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPGSRWGSLSPTNGSLNGHTAHSSSPVRGAGAAGGVDGRFPANGGVGGSTSTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAAQGSXXXXXXXXXXXXXXXXXXXXXGEGDAGTLSSARQGXXXXXXXXXXXXKKAVRRGVTFAEDVVVVQDKAXXXXXEDPRCRGEXXXXXXXXXAASPDRFVGWSP 1179
MHSKAFYAIEQLKGIRD+ KSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD KTRNAA TA+PGSRWGSLSP++GS +GHTAH SSP+RGA AAGGVD RFPANGGVGGST TPPRKKPREKSPWEGRGRKRPRSGGSGKRV GGGGLSASSRQEHAKVHFLLTSLR SKAAAAQG XXXXXXXXXXXXXXXX XXXXXXXXXXXX KAVRRGVTFAEDVVVVQDKA EDPR RGE XXX AASPDR +GWSP
Sbjct: 326 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD-KTRNAAPTATPGSRWGSLSPSHGSPDGHTAHPSSPLRGARAAGGVDDRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVTGGGGLSASSRQEHAKVHFLLTSLRPSKAAAAQGGDGGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVRRGVTFAEDVVVVQDKAVAAV-EDPRWRGEAAAGXXXASAASPDRVIGWSP 714
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA) HSP 1 Score: 153 bits (387), Expect = 5.640e-37 Identity = 86/181 (47.51%), Postives = 118/181 (65.19%), Query Frame = 1
Query: 1 MHSKAFYAIEQLKG---------------IRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDD 498
MHSKA I QL +R+Q + S R D RP+KAI+FSQF VL++VGDK R G PE GW RG + VAEF+G RR EL +F+T +CFVLLL G+ GLDLSFVTH++L+++IW+++LE QV+ARA+R+GA G V V+QL M+ T+E+ L + ++ D+
Sbjct: 1044 MHSKAREVIRQLDAARATAQQVQHELAASVREQRRLSAAR---DTRPVKAIIFSQFRKVLDMVGDKMYRYYGRCPEAGWLERGSEQVAEFFGA-RRNDELTKFKTSADCFVLLLNMDGSTGLDLSFVTHIYLLEEIWNKALERQVIARAHRLGATGPVKVIQLAMRGTIEETLLNGMDGDN 1220
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: B8CDY7_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY7_THAPS) HSP 1 Score: 141 bits (355), Expect = 8.150e-33 Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 7 SKAFYAIEQLKGIRDQTK-----------SSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
SKA Y I++L +R+++ S + +RPLKAIVFSQF P+ GD+ +RE GG CVA+F R EL++FR DP+CF++LL K+G+HGLDLSF TH+F +D I+D+SLE QVVARA RMGA G V V QL KD++E+ +
Sbjct: 1282 SKAKYTIDKLLQLRNESSRNVSELAVRMFSKSSTHSSSHRPLKAIVFSQFRPIYEYFGDRLIREFGGA-----------CVADFSFTKTRNEELKKFRLDPQCFIMLLSKQGSHGLDLSFCTHIFFLDTIYDKSLEQQVVARAYRMGATGPVYVEQLTAKDSIEEVM 1437
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S3L006_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L006_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.190e-31 Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 106 IVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD 495
I+FSQF LN+VGD+ L G CV+E+WG+ R + EL +F +DPECF +LLGK G+ GLDLSFVTH+F +++IWD+SL Q VARA RMGA+G+V V +I +DT+E+ +++ D
Sbjct: 1 IIFSQFRKALNLVGDRLLGRFGSA-----------CVSEYWGRYRTQ-ELHKFTSDPECFCMLLGKDGSEGLDLSFVTHIFFLEEIWDKSLAEQTVARAWRMGARGAVEVETIIAQDTVEETMKALEAGD 118
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S0C464_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C464_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.990e-30 Identity = 64/126 (50.79%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQ 468
RP+K I+FSQF +LN+VGD+ +R G C+AE+WG +R+ EL +F CF +LLGK G+HGLDLSFVTH+F +++IWD+SL+ QV+ARA RMGA GSV V QL+ K+++E+
Sbjct: 428 RPVKVILFSQFRQILNVVGDRLIRRFGN-----------DCIAEYWGGHRKS-ELAKFILSENCFCMLLGKDGSHGLDLSFVTHIFFVEEIWDKSLKDQVIARAYRMGATGSVHVEQLVAKNSVEE 541
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S2UJZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJZ7_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.010e-29 Identity = 65/148 (43.92%), Postives = 101/148 (68.24%), Query Frame = 1
Query: 91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPG 534
R LK I+FSQF P+LN++GD+ +R+ G + ++E+WG + + EL++F P+CF++LL + G+HGLDLSFVTHMF M++IWD+SLE QVVAR+ RMG KG V + QL+ ++++E EL + +N + ++A + G
Sbjct: 428 RALKVIIFSQFRPILNLIGDRLIRKFG-----------DDNISEYWGYAKAK-ELDKFIYSPDCFIMLLSRDGSHGLDLSFVTHMFFMEEIWDKSLEQQVVARSYRMGTKGHVEIEQLVSRNSVE-ELMANMNDREGEQSAVKLSENG 562
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A448ZGK3_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK3_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.120e-29 Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 82 GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
G RP K IVFSQF VLNI GD+ LR G C+AE+WGK R++ EL++F D +C +LLGK G+ GLDLSFVTH+ ++Q+WD+SLE QVVARA RMGA+GSV V L+ ++++E+ +
Sbjct: 1368 GGRRPPKVIVFSQFRKVLNITGDRLLRRFGSG-----------CIAEYWGKYRKK-ELQKFVRDEKCLCMLLGKDGSEGLDLSFVTHIVFLEQVWDKSLENQVVARAWRMGARGSVEVETLVAENSIEETM 1486
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A1Z5KLC0_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLC0_FISSO) HSP 1 Score: 129 bits (324), Expect = 9.000e-29 Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 1
Query: 7 SKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDK 501
SK+ Y I ++ + +K+ RPLK IVFSQF LN+VGD+ R G CVAE+WG+ R+E EL +F EC LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA G V V L+ + ++E E+ V +D++
Sbjct: 1042 SKSHYLINKIAALHSNSKNQ--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHHSECVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGAHGRVEVETLVAQHSVE-EIMMDVKADEQ 1185
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A1Z5KNI5_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNI5_FISSO) HSP 1 Score: 128 bits (322), Expect = 1.640e-28 Identity = 72/167 (43.11%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 7 SKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTR 507
SK+ Y I ++ + +K+ RPLK IVFSQF LN+VGD+ R G CVAE+WG+ R+E EL +F +C LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA+G V V L+ + ++E+ + +++DD+ +
Sbjct: 1039 SKSHYLINKIAALHSNSKNE--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHRNDCVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGARGRVEVETLVAQHSVEEIM---MDADDEQK 1182 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15669.4193.1 >prot_Ecto-sp13_S_contig15669.4193.1 ID=prot_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDback to top mRNA from alignment at Ecto-sp13_S_contig15669:463..3885+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15669.4193.1 ID=mRNA_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15669:463..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15669:463..3885+ >mRNA_Ecto-sp13_S_contig15669.4193.1 ID=mRNA_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15669:463..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |